Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g047120 Pisum sativum HOM05D001726 ORTHO05D002871 1.3e-51 206.1 105 100.0
Glyma.08G031200 Glycine max HOM05D001726 ORTHO05D001761 4.9e-09 64.7 62 62.9
Lalb_Chr05g0223491 Lupinus albus HOM05D001726 ORTHO05D001761 4.9e-09 64.7 62 61.3
CANSAT56G0360 Cannabis sativa HOM05D001726 ORTHO05D001761 8.3e-09 63.9 62 61.3
CANSAT56G1428 Cannabis sativa HOM05D001726 ORTHO05D001761 8.3e-09 63.9 62 61.3
Duzib150G0349 Durio zibethinus HOM05D001726 ORTHO05D001761 8.3e-09 63.9 62 61.3
Lalb_Chr09g0331691 Lupinus albus HOM05D001726 ORTHO05D001761 8.3e-09 63.9 62 61.3
AUR62041557 Chenopodium quinoa HOM05D001726 ORTHO05D001761 1.1e-08 63.5 91 49.5
COL.COLO4_18259 Corchorus olitorius HOM05D001726 ORTHO05D001761 1.1e-08 63.5 62 59.7
Peaxi162Scf00354g00067 Petunia axillaris HOM05D001726 ORTHO05D001761 1.1e-08 63.5 62 59.7
RcHm_v2.0_Chr2g0092461 Rosa chinensis HOM05D001726 ORTHO05D001761 1.1e-08 63.5 62 61.3
Ah.04g162520 Amaranthus hybridus HOM05D001726 ORTHO05D001761 1.4e-08 63.2 62 59.7
Ca_25609_v3 Cicer arietinum L. HOM05D001726 ORTHO05D001761 1.4e-08 63.2 62 61.3
Psat0s302g0080 Pisum sativum HOM05D009048 ORTHO05D002871 1.4e-08 63.2 49 53.1
arahy.Tifrunner.gnm1.ann1.JHS34B Arachis hypogaea HOM05D001726 ORTHO05D001761 1.8e-08 62.8 62 61.3
arahy.Tifrunner.gnm1.ann1.U9GDAA Arachis hypogaea HOM05D001726 ORTHO05D001761 1.8e-08 62.8 62 61.3
Duzib168G2081 Durio zibethinus HOM05D001726 ORTHO05D001761 1.8e-08 62.8 62 61.3
Gohir.A07G009700 Gossypium hirsutum HOM05D001726 ORTHO05D001761 1.8e-08 62.8 62 59.7
Psat3g080080 Pisum sativum HOM05D009679 ORTHO05D012251 1.8e-08 62.8 40 65.0
GSVIVG01015258001 Vitis vinifera HOM05D001726 ORTHO05D001761 1.8e-08 62.8 62 59.7
Ah.06g186710 Amaranthus hybridus HOM05D001726 ORTHO05D001761 2.4e-08 62.4 62 59.7
CiPaw.15G042900 Carya illinoinensis HOM05D001726 ORTHO05D001761 2.4e-08 62.4 62 59.7
Glyma.07G127300 Glycine max HOM05D001726 ORTHO05D001761 2.4e-08 62.4 62 61.3
Gohir.A13G194300 Gossypium hirsutum HOM05D001726 ORTHO05D001761 2.4e-08 62.4 62 61.3
Gohir.D06G068600 Gossypium hirsutum HOM05D001726 ORTHO05D001761 2.4e-08 62.4 62 59.7
Gohir.D13G200100 Gossypium hirsutum HOM05D001726 ORTHO05D001761 2.4e-08 62.4 62 61.3
Gorai.010G080200 Gossypium raimondii HOM05D001726 ORTHO05D001761 2.4e-08 62.4 62 59.7
Gorai.013G228900 Gossypium raimondii HOM05D001726 ORTHO05D001761 2.4e-08 62.4 62 61.3
Hma1.2p1_1074F.1_g254440 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 2.4e-08 62.4 62 58.1
Lalb_Chr22g0349821 Lupinus albus HOM05D001726 ORTHO05D001761 2.4e-08 62.4 63 61.9
Nn8g38976 Nelumbo nucifera HOM05D001726 ORTHO05D001761 2.4e-08 62.4 62 59.7
Solyc05g026050.4 Solanum lycopersicum HOM05D001726 ORTHO05D001761 2.4e-08 62.4 62 58.1
Sopen05g022290 Solanum pennellii HOM05D001726 ORTHO05D001761 2.4e-08 62.4 62 58.1
PGSC0003DMG400028944 Solanum tuberosum HOM05D001726 ORTHO05D001761 2.4e-08 62.4 62 58.1
Thecc.09G095400 Theobroma cacao HOM05D001726 ORTHO05D001761 2.4e-08 62.4 62 61.3
TWI34G0255 Tripterygium wilfordii HOM05D001726 ORTHO05D001761 2.4e-08 62.4 62 59.7
arahy.Tifrunner.gnm1.ann1.JZ8AA6 Arachis hypogaea HOM05D001726 ORTHO05D001761 3.1e-08 62.0 62 59.7
arahy.Tifrunner.gnm1.ann1.VNZN40 Arachis hypogaea HOM05D001726 ORTHO05D001761 3.1e-08 62.0 62 59.7
FAN23G2685 Fragaria x ananassa HOM05D001726 ORTHO05D001761 3.1e-08 62.0 62 61.3
FAN26G0969 Fragaria x ananassa HOM05D001726 ORTHO05D001761 3.1e-08 62.0 62 61.3
FAN26G3035 Fragaria x ananassa HOM05D001726 ORTHO05D001761 3.1e-08 62.0 62 61.3
FAN28G2640 Fragaria x ananassa HOM05D001726 ORTHO05D001761 3.1e-08 62.0 62 61.3
Gohir.A06G070000 Gossypium hirsutum HOM05D001726 ORTHO05D001761 3.1e-08 62.0 61 60.7
MBI04_g06986_MAGBIO Magnolia biondii HOM05D001726 ORTHO05D001761 3.1e-08 62.0 62 59.7
TAR626G1982 Trochodendron aralioides HOM05D001726 ORTHO05D001761 3.1e-08 62.0 62 59.7
Lj4g0009435 Lotus japonicus HOM05D001726 ORTHO05D001761 4.1e-08 61.6 62 59.7
Lj4g0009594 Lotus japonicus HOM05D001726 ORTHO05D001761 4.1e-08 61.6 62 59.7
Manes.03G029850 Manihot esculenta HOM05D001726 ORTHO05D001761 4.1e-08 61.6 62 59.7
Nn6g35374 Nelumbo nucifera HOM05D001726 ORTHO05D001761 4.1e-08 61.6 62 59.7
Potri.006G154000 Populus trichocarpa HOM05D001726 ORTHO05D001761 4.1e-08 61.6 59 57.6
TPR.G18788 Trifolium pratense HOM05D001726 ORTHO05D001761 4.1e-08 61.6 62 58.1
TAR636G2067 Trochodendron aralioides HOM05D001726 ORTHO05D001761 4.1e-08 61.6 62 59.7
vmacro06267 Vaccinium macrocarpon HOM05D001726 ORTHO05D001761 4.1e-08 61.6 62 59.7
CsaV3_1G040030 Cucumis sativus L. HOM05D001726 ORTHO05D001761 5.4e-08 61.2 62 59.7
DCAR_007701 Daucus carota HOM05D001726 ORTHO05D001761 5.4e-08 61.2 62 59.7
Duzib187G0995 Durio zibethinus HOM05D001726 ORTHO05D001761 5.4e-08 61.2 62 59.7
Potri.018G069900 Populus trichocarpa HOM05D001726 ORTHO05D001761 5.4e-08 61.2 59 55.9
TWI63G1284 Tripterygium wilfordii HOM05D001726 ORTHO05D001761 5.4e-08 61.2 62 59.7
ClCG03G015920 Citrullus lanatus HOM05D001726 ORTHO05D001761 7.0e-08 60.8 62 59.7
FvH4_1g06720 Fragaria vesca HOM05D001726 ORTHO05D001761 7.0e-08 60.8 62 59.7
FAN19G1466 Fragaria x ananassa HOM05D001726 ORTHO05D001761 7.0e-08 60.8 62 59.7
Glyma.01G004500 Glycine max HOM05D001726 ORTHO05D001761 7.0e-08 60.8 62 59.7
Gohir.D07G010000 Gossypium hirsutum HOM05D001726 ORTHO05D001761 7.0e-08 60.8 62 58.1
Gorai.001G010300 Gossypium raimondii HOM05D001726 ORTHO05D001761 7.0e-08 60.8 62 58.1
Lsat_1_v5_gn_1_90081 Lactuca sativa HOM05D001726 ORTHO05D001761 7.0e-08 60.8 62 58.1
Lsat_1_v5_gn_7_33820 Lactuca sativa HOM05D001726 ORTHO05D001761 7.0e-08 60.8 62 59.7
Lj7A695T38 Lonicera japonica HOM05D001726 ORTHO05D001761 7.0e-08 60.8 62 59.7
Lalb_Chr16g0390961 Lupinus albus HOM05D001726 ORTHO05D001761 7.0e-08 60.8 62 61.3
Prupe.7G215600 Prunus persica HOM05D001726 ORTHO05D001761 7.0e-08 60.8 62 58.1
VMungo0251G1764 Vigna mungo HOM05D001726 ORTHO05D001761 7.0e-08 60.8 62 59.7
Aqoxy7G01348 Aquilegia oxysepala HOM05D001726 ORTHO05D001761 9.2e-08 60.5 62 56.5
Lalb_Chr14g0375271 Lupinus albus HOM05D001726 ORTHO05D001761 9.2e-08 60.5 63 57.1
Phvul.002G305900 Phaseolus vulgaris HOM05D001726 ORTHO05D001761 9.2e-08 60.5 62 59.7
Hund07640 Selenicereus undatus HOM05D001726 ORTHO05D001761 9.2e-08 60.5 62 59.7
Cpa.g.sc229.3 Carica papaya HOM05D001726 ORTHO05D001761 1.2e-07 60.1 62 58.1
VMungo0464G0850 Vigna mungo HOM05D001726 ORTHO05D001761 1.2e-07 60.1 62 61.3
MSTRG.6034 Avicennia marina HOM05D001726 ORTHO05D001761 1.6e-07 59.7 62 58.1
EL10Ac4g08709 Beta vulgaris HOM05D001726 ORTHO05D001761 1.6e-07 59.7 62 56.5
Dinv36725 Davidia involucrata HOM05D001726 ORTHO05D001761 1.6e-07 59.7 62 58.1
Manes.16G105800 Manihot esculenta HOM05D001726 ORTHO05D001761 1.6e-07 59.7 62 59.7
Nitab4.5_0000012g0320 Nicotiana tabacum HOM05D001726 ORTHO05D001761 1.6e-07 59.7 62 56.5
Psat7g019280 Pisum sativum HOM05D001726 ORTHO05D001761 1.6e-07 59.7 62 59.7
Sabra06G0122200 Salix brachista HOM05D001726 ORTHO05D001761 1.6e-07 59.7 59 55.9
Sc18g0001810 Simmondsia chinensis HOM05D001726 ORTHO05D001761 1.6e-07 59.7 62 58.1
TAR624G1432 Trochodendron aralioides HOM05D001726 ORTHO05D001761 1.6e-07 59.7 62 58.1
ECA236G0677 Erigeron canadensis HOM05D001726 ORTHO05D001761 2.0e-07 59.3 62 58.1
Hma1.2p1_0663F.1_g198620 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 2.0e-07 59.3 62 56.5
Lsat_1_v5_gn_6_7580 Lactuca sativa HOM05D001726 ORTHO05D001761 2.0e-07 59.3 62 58.1
CSS0037724 Camellia sinensis var. sinensis HOM05D001726 ORTHO05D001761 2.7e-07 58.9 62 56.5
AUR62034177 Chenopodium quinoa HOM05D001726 ORTHO05D001761 2.7e-07 58.9 62 58.1
Glyma.05G224200 Glycine max HOM05D001726 ORTHO05D001761 2.7e-07 58.9 62 59.7
Lj4A321T29 Lonicera japonica HOM05D001726 ORTHO05D001761 2.7e-07 58.9 62 56.5
MD02G1072100 Malus domestica HOM05D001726 ORTHO05D001761 2.7e-07 58.9 75 52.0
Nitab4.5_0001946g0020 Nicotiana tabacum HOM05D001726 ORTHO05D001761 2.7e-07 58.9 62 56.5
Psat7g019240 Pisum sativum HOM05D001726 ORTHO05D001761 2.7e-07 58.9 62 58.1
Rhsim03G0235300 Rhododendron simsii HOM05D001726 ORTHO05D001761 2.7e-07 58.9 62 54.8
MELO3C004611.2 Cucumis melo HOM05D001726 ORTHO05D001761 3.5e-07 58.5 62 58.1
Glyma.17G216900 Glycine max HOM05D001726 ORTHO05D001761 3.5e-07 58.5 62 59.7
Lj4g0017724 Lotus japonicus HOM05D001726 ORTHO05D001761 3.5e-07 58.5 62 58.1
MD15G1201900 Malus domestica HOM05D001726 ORTHO05D001761 3.5e-07 58.5 62 58.1
Oeu011789.2 Olea europaea HOM05D001726 ORTHO05D001761 3.5e-07 58.5 65 56.9
Phvul.004G173000 Phaseolus vulgaris HOM05D001726 ORTHO05D001761 3.5e-07 58.5 62 58.1
PGR146G0001 Punica granatum HOM05D001726 ORTHO05D001761 3.5e-07 58.5 61 60.7
Actinidia29894 Actinidia chinensis HOM05D001726 ORTHO05D001761 4.5e-07 58.2 62 54.8
Ciclev10009534m.g Citrus clementina HOM05D001726 ORTHO05D001761 4.5e-07 58.2 63 60.3
CsaV3_2G001640 Cucumis sativus L. HOM05D001726 ORTHO05D001761 4.5e-07 58.2 62 58.1
Gohir.A08G244300 Gossypium hirsutum HOM05D001726 ORTHO05D001761 4.5e-07 58.2 62 58.1
Gohir.D08G265200 Gossypium hirsutum HOM05D001726 ORTHO05D001761 4.5e-07 58.2 62 58.1
Hund22269 Selenicereus undatus HOM05D001726 ORTHO05D001761 4.5e-07 58.2 62 56.5
Sc12g0010020 Simmondsia chinensis HOM05D001726 ORTHO05D001761 4.5e-07 58.2 62 56.5
THA.LOC104820039 Tarenaya hassleriana HOM05D001726 ORTHO05D001761 4.5e-07 58.2 63 57.1
Gorai.004G283100 Gossypium raimondii HOM05D001726 ORTHO05D001761 5.9e-07 57.8 62 58.1
Psat4g063520 Pisum sativum HOM05D009048 ORTHO05D002871 5.9e-07 57.8 41 61.0
PGR042G3109 Punica granatum HOM05D001726 ORTHO05D001761 5.9e-07 57.8 61 59.0
TPR.G25486 Trifolium pratense HOM05D001726 ORTHO05D001761 7.7e-07 57.4 62 56.5
Atru.chr7.1513 Acer truncatum HOM05D001726 ORTHO05D001761 1.0e-06 57.0 66 56.1
Actinidia39753 Actinidia chinensis HOM05D001726 ORTHO05D001761 1.0e-06 57.0 61 59.0
Dinv42282 Davidia involucrata HOM05D001726 ORTHO05D001761 1.0e-06 57.0 62 56.5
Nitab4.5_0000318g0010 Nicotiana tabacum HOM05D001726 ORTHO05D001761 1.0e-06 57.0 60 58.3
Psat4g149320 Pisum sativum HOM05D004090 ORTHO05D002871 1.0e-06 57.0 39 59.0
Psat5g271840 Pisum sativum HOM05D009048 ORTHO05D002871 1.0e-06 57.0 38 63.2
Sed0023830 Sechium edule HOM05D001726 ORTHO05D001761 1.0e-06 57.0 61 59.0
vmacro10827 Vaccinium macrocarpon HOM05D001726 ORTHO05D001761 1.0e-06 57.0 63 58.7
Peaxi162Scf00840g00114 Petunia axillaris HOM05D001726 ORTHO05D001761 1.3e-06 56.6 60 56.7
THA.LOC104814576 Tarenaya hassleriana HOM05D001726 ORTHO05D001761 1.3e-06 56.6 63 54.0
TWI32G1212 Tripterygium wilfordii HOM05D001726 ORTHO05D001761 1.3e-06 56.6 62 56.5
Oeu021465.1 Olea europaea HOM05D001726 ORTHO05D001761 1.7e-06 56.2 64 56.2
PSO063G1194 Papaver somniferum HOM05D001726 ORTHO05D001761 1.7e-06 56.2 62 54.8
QL02p001812 Quercus lobata HOM05D001726 ORTHO05D001761 1.7e-06 56.2 61 57.4
CAN.G20.8 Capsicum annuum HOM05D001726 ORTHO05D001761 2.3e-06 55.8 60 56.7
ClCG11G001910 Citrullus lanatus HOM05D001726 ORTHO05D001761 2.3e-06 55.8 62 54.8
Nitab4.5_0004958g0010 Nicotiana tabacum HOM05D001726 ORTHO05D001761 2.3e-06 55.8 60 56.7
PSO832G2233 Papaver somniferum HOM05D001726 ORTHO05D001761 2.3e-06 55.8 62 54.8
Psat2g008760 Pisum sativum HOM05D009048 ORTHO05D002871 2.3e-06 55.8 44 56.8
Rhsim05G0029900 Rhododendron simsii HOM05D001726 ORTHO05D001761 2.3e-06 55.8 63 57.1
Sopen08g019600 Solanum pennellii HOM05D001726 ORTHO05D001761 2.3e-06 55.8 60 56.7
Carub.0007s1143 Capsella rubella HOM05D001726 ORTHO05D001761 2.9e-06 55.5 62 53.2
CiPaw.03G220400 Carya illinoinensis HOM05D001726 ORTHO05D001761 2.9e-06 55.5 61 57.4
Psat5g082480 Pisum sativum HOM05D009048 ORTHO05D002871 2.9e-06 55.5 40 60.0
AUR62022252 Chenopodium quinoa HOM05D001726 ORTHO05D001761 3.8e-06 55.1 61 54.1
Medtr8g102020 Medicago truncatula HOM05D001726 ORTHO05D001761 3.8e-06 55.1 62 54.8
Psat4g031320 Pisum sativum HOM05D009679 ORTHO05D012251 3.8e-06 55.1 49 53.1
PGSC0003DMG400013827 Solanum tuberosum HOM05D001726 ORTHO05D001761 3.8e-06 55.1 60 56.7
AUR62031967 Chenopodium quinoa HOM05D001726 ORTHO05D001761 5.0e-06 54.7 60 56.7
Ca_17385_v3 Cicer arietinum L. HOM05D001726 ORTHO05D001761 5.0e-06 54.7 62 54.8
Eucgr.C00934 Eucalyptus grandis HOM05D001726 ORTHO05D001761 5.0e-06 54.7 63 54.0
SalBow1G8288 Salvia bowleyana HOM05D001726 ORTHO05D001761 5.0e-06 54.7 62 54.8
Solyc08g065900.4 Solanum lycopersicum HOM05D001726 ORTHO05D001761 5.0e-06 54.7 59 55.9
Hund06796 Selenicereus undatus HOM05D001726 ORTHO05D001761 6.6e-06 54.3 59 54.2
SGA_v2.0_scaffold88G27209 Striga asiatica HOM05D001726 ORTHO05D001761 6.6e-06 54.3 104 40.4
CiPaw.04G153600 Carya illinoinensis HOM05D001726 ORTHO05D001761 8.6e-06 53.9 61 55.7
Cc06_g10890 Coffea canephora HOM05D001726 ORTHO05D001761 8.6e-06 53.9 64 54.7
Nitab4.5_0000664g0050 Nicotiana tabacum HOM05D001726 ORTHO05D001761 8.6e-06 53.9 62 53.2
Sc14g0000800 Simmondsia chinensis HOM05D001726 ORTHO05D001761 8.6e-06 53.9 64 56.2


User provided reference genes

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