Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s1289g0080 Pisum sativum HOM05D002733 ORTHO05D010023 1.3e-227 792.7 396 100.0
Medtr5g089100 Medicago truncatula HOM05D002733 ORTHO05D010023 7.5e-188 660.6 397 83.9
TPR.G16419 Trifolium pratense HOM05D002733 ORTHO05D010023 8.4e-163 577.4 398 75.4
Ca_06190_v3 Cicer arietinum L. HOM05D002733 ORTHO05D010023 6.5e-123 444.9 396 64.6
Glyma.14G036400 Glycine max HOM05D002733 ORTHO05D010023 3.1e-109 399.4 406 59.4
LjContig00564g0023278 Lotus japonicus HOM05D002733 ORTHO05D010023 3.6e-105 386.0 399 56.1
Glyma.02G278200 Glycine max HOM05D002733 ORTHO05D010023 1.6e-89 334.0 348 58.0
Lalb_Chr10g0106141 Lupinus albus HOM05D002733 ORTHO05D010023 5.8e-87 325.5 370 54.6
Phvul.008G202700 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 8.1e-73 278.5 343 53.9
VMungo0647G1446 Vigna mungo HOM05D002733 ORTHO05D010023 4.4e-71 272.7 398 46.5
Phvul.008G165900 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 4.9e-70 269.2 351 52.1
arahy.Tifrunner.gnm1.ann1.88337C Arachis hypogaea HOM05D002733 ORTHO05D010023 4.1e-69 266.2 426 46.9
arahy.Tifrunner.gnm1.ann1.MI3W0U Arachis hypogaea HOM05D002733 ORTHO05D010023 7.8e-68 261.9 426 46.2
CiPaw.13G148700 Carya illinoinensis HOM05D002733 ORTHO05D010023 2.6e-47 193.7 394 37.3
Thecc.09G246300 Theobroma cacao HOM05D002733 ORTHO05D010023 2.4e-45 187.2 410 35.6
QL01p016685 Quercus lobata HOM05D002733 ORTHO05D010023 7.9e-44 182.2 356 40.4
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 4.3e-42 176.4 395 37.0
Prupe.4G260600 Prunus persica HOM05D002733 ORTHO05D010023 2.9e-38 163.7 420 36.4
Potri.001G274000 Populus trichocarpa HOM05D002733 ORTHO05D010023 3.5e-36 156.8 398 32.2
MD00G1045800 Malus domestica HOM05D002733 ORTHO05D010023 3.9e-35 153.3 411 34.8
Cfa009898 Carpinus fangiana HOM05D002733 ORTHO05D010023 5.1e-35 152.9 390 34.9
Manes.02G136900 Manihot esculenta HOM05D002733 ORTHO05D010023 6.7e-35 152.5 410 31.7
Dinv04578 Davidia involucrata HOM05D002733 ORTHO05D010023 3.3e-34 150.2 415 34.2
MD03G1164300 Malus domestica HOM05D002733 ORTHO05D010023 4.8e-33 146.4 382 35.3
Manes.05G200100 Manihot esculenta HOM05D002733 ORTHO05D010023 9.0e-32 142.1 394 34.5
Sabra16G0168800 Salix brachista HOM05D002733 ORTHO05D010023 5.0e-30 136.3 407 29.7
Dinv36151 Davidia involucrata HOM05D002733 ORTHO05D010023 1.4e-29 134.8 341 34.3
ClCG02G022730 Citrullus lanatus HOM05D002733 ORTHO05D010023 7.1e-29 132.5 293 33.8
FAN20G0750 Fragaria x ananassa HOM05D002733 ORTHO05D010023 2.1e-28 131.0 271 38.0
Gorai.001G135300 Gossypium raimondii HOM05D002733 ORTHO05D010023 2.1e-28 131.0 385 34.8
Potri.009G068200 Populus trichocarpa HOM05D002733 ORTHO05D010023 2.1e-28 131.0 349 31.8
Gohir.A07G121200 Gossypium hirsutum HOM05D002733 ORTHO05D010023 1.0e-27 128.6 395 32.4
Gohir.D07G125500 Gossypium hirsutum HOM05D002733 ORTHO05D010023 1.3e-27 128.3 385 34.5
FAN15G1799 Fragaria x ananassa HOM05D002733 ORTHO05D010023 3.9e-27 126.7 275 36.4
Eucgr.J00677 Eucalyptus grandis HOM05D002733 ORTHO05D010023 1.3e-25 121.7 410 32.2
FvH4_2g06740 Fragaria vesca HOM05D002733 ORTHO05D010023 3.7e-25 120.2 275 35.3
RcHm_v2.0_Chr6g0258931 Rosa chinensis HOM05D002733 ORTHO05D010023 3.7e-25 120.2 183 46.4
Ciclev10017459m.g Citrus clementina HOM05D002733 ORTHO05D010023 4.8e-25 119.8 399 30.1
CsaV3_6G038850 Cucumis sativus L. HOM05D002733 ORTHO05D010023 4.8e-25 119.8 295 32.9
FAN27G2498 Fragaria x ananassa HOM05D002733 ORTHO05D010023 1.1e-24 118.6 264 36.0
FAN24G3374 Fragaria x ananassa HOM05D002733 ORTHO05D010023 1.4e-24 118.2 276 34.8
Hma1.2p1_0460F.1_g157570 Hydrangea macrophylla HOM05D002733 ORTHO05D010023 4.1e-24 116.7 402 31.3
MELO3C014550.2 Cucumis melo HOM05D002733 ORTHO05D010023 6.9e-24 115.9 298 33.2
Sed0027264 Sechium edule HOM05D002733 ORTHO05D010023 6.9e-24 115.9 263 33.8
TWI79G0642 Tripterygium wilfordii HOM05D002733 ORTHO05D010023 9.0e-24 115.5 392 31.1
TAR369G1143 Trochodendron aralioides HOM05D002733 ORTHO05D010023 9.0e-24 115.5 200 42.0
COL.COLO4_02755 Corchorus olitorius HOM05D002733 ORTHO05D010023 2.0e-23 114.4 411 27.7
CANSAT54G1196 Cannabis sativa HOM05D002733 ORTHO05D010023 7.7e-23 112.5 400 34.2
Atru.chr3.3004 Acer truncatum HOM05D002733 ORTHO05D010023 1.0e-22 112.1 397 32.7
DCAR_029984 Daucus carota HOM05D002733 ORTHO05D010023 6.5e-22 109.4 379 33.5
MSTRG.18469 Avicennia marina HOM05D002733 ORTHO05D010023 5.5e-21 106.3 269 34.9
Actinidia06978 Actinidia chinensis HOM05D002733 ORTHO05D010023 9.4e-21 105.5 385 30.4
Oeu025912.1 Olea europaea HOM05D002733 ORTHO05D010023 4.6e-20 103.2 271 33.9
Rhsim13G0206300 Rhododendron simsii HOM05D002733 ORTHO05D010023 2.0e-18 97.8 372 31.7
Peaxi162Scf00004g00424 Petunia axillaris HOM05D018239 ORTHO05D010023 4.3e-18 96.7 388 29.4
Dinv36152 Davidia involucrata HOM05D000362 ORTHO05D000325 1.3e-17 95.1 114 55.3
Migut.D00675 Erythranthe guttata HOM05D002733 ORTHO05D010023 4.8e-17 93.2 197 41.1
AUR62006558 Chenopodium quinoa HOM05D002733 ORTHO05D010023 8.2e-17 92.4 199 39.7
AUR62000212 Chenopodium quinoa HOM05D002733 ORTHO05D010023 1.1e-16 92.0 189 41.3
Sopen11g024780 Solanum pennellii HOM05D018239 ORTHO05D010023 2.4e-16 90.9 385 29.1
ECA238G3721 Erigeron canadensis HOM05D002733 ORTHO05D010023 3.1e-16 90.5 382 31.2
Ah.06g194720 Amaranthus hybridus HOM05D002733 ORTHO05D010023 6.9e-16 89.4 186 38.2
Aqoxy2G00438 Aquilegia oxysepala HOM05D002733 ORTHO05D010023 6.9e-16 89.4 232 38.4
PGR119G1676 Punica granatum HOM05D002733 ORTHO05D010023 6.9e-16 89.4 200 40.5
PGSC0003DMG400009447 Solanum tuberosum HOM05D018239 ORTHO05D010023 6.9e-16 89.4 389 28.8
Solyc11g065010.1 Solanum lycopersicum HOM05D018239 ORTHO05D010023 2.0e-15 87.8 380 28.4
PGR102G0853 Punica granatum HOM05D002733 ORTHO05D010023 3.4e-15 87.0 356 31.5
Lsat_1_v5_gn_2_32340 Lactuca sativa HOM05D002733 ORTHO05D010023 7.7e-15 85.9 183 39.9
Nitab4.5_0007012g0030 Nicotiana tabacum HOM05D018239 ORTHO05D010023 1.3e-14 85.1 409 27.9
TAR633G0275 Trochodendron aralioides HOM05D002733 ORTHO05D010023 5.0e-14 83.2 159 39.0
ATR0307G041 Amborella trichopoda HOM05D002733 ORTHO05D010023 1.4e-13 81.6 160 40.0
Dinv41084 Davidia involucrata HOM05D002733 ORTHO05D010023 2.5e-13 80.9 128 40.6
CAN.G468.8 Capsicum annuum HOM05D018239 ORTHO05D010023 3.2e-13 80.5 402 27.4
Sc16g0010940 Simmondsia chinensis HOM05D002733 ORTHO05D010023 4.2e-13 80.1 105 51.4
Lsat_1_v5_gn_2_32520 Lactuca sativa HOM05D002733 ORTHO05D010023 7.2e-13 79.3 185 38.4
SGA_v2.0_scaffold29G12225 Striga asiatica HOM05D002733 ORTHO05D010023 3.0e-11 73.9 162 40.1
Sabra09G0051300 Salix brachista HOM05D002733 ORTHO05D010023 3.9e-11 73.6 87 49.4
MBI13_g09212_MAGBIO Magnolia biondii HOM05D002733 ORTHO05D010023 6.7e-11 72.8 384 27.3
Nitab4.5_0006764g0040 Nicotiana tabacum HOM05D018239 ORTHO05D010023 3.3e-10 70.5 391 26.3
Peaxi162Scf00684g00566 Petunia axillaris HOM05D001841 ORTHO05D001767 1.3e-09 68.6 218 29.4
Aa31LG5G9340 Aethionema arabicum HOM05D006792 ORTHO05D008489 1.1e-08 65.5 189 31.2
PGR142G1787 Punica granatum HOM05D001841 ORTHO05D001767 3.1e-08 63.9 208 29.8
Oeu007260.1 Olea europaea HOM05D001841 ORTHO05D001767 4.1e-08 63.5 195 31.8
HanXRQChr03g0090311 Helianthus annuus HOM05D002733 ORTHO05D010023 5.3e-08 63.2 193 35.8
Lalb_Chr05g0219031 Lupinus albus HOM05D001841 ORTHO05D001767 9.1e-08 62.4 238 33.2
Sp4g07730 Schrenkiella parvula HOM05D001841 ORTHO05D001767 9.1e-08 62.4 204 31.9
Lsat_1_v5_gn_3_109980 Lactuca sativa HOM05D002733 ORTHO05D010023 1.2e-07 62.0 181 33.1
Actinidia27944 Actinidia chinensis HOM05D000058 ORTHO05D001767 2.0e-07 61.2 213 31.0
Eucgr.F00024 Eucalyptus grandis HOM05D001841 ORTHO05D001767 3.5e-07 60.5 211 31.8
AL4G19390 Arabidopsis lyrata HOM05D001841 ORTHO05D001767 4.5e-07 60.1 217 29.5
HPP92_022826 Vanilla planifolia HOM05D002733 ORTHO05D010023 4.5e-07 60.1 154 33.1
SGA_v2.0_scaffold32G13089 Striga asiatica HOM05D001841 ORTHO05D001767 7.7e-07 59.3 181 30.9
MSTRG.16762 Avicennia marina HOM05D001841 ORTHO05D001767 1.0e-06 58.9 205 32.7
BcaB06g27216 Brassica carinata HOM05D001841 ORTHO05D001767 1.3e-06 58.5 202 29.7
CARHR120050 Cardamine hirsuta HOM05D001841 ORTHO05D001767 1.3e-06 58.5 185 30.8
SEGI_11594 Sequoiadendron giganteum HOM05D003270 ORTHO05D003662 1.3e-06 58.5 215 30.7
THA.LOC104803791 Tarenaya hassleriana HOM05D001841 ORTHO05D001767 1.3e-06 58.5 102 41.2
A03p26960 Brassica napus HOM05D001841 ORTHO05D001767 2.2e-06 57.8 201 29.4
AT2G26530 Arabidopsis thaliana HOM05D001841 ORTHO05D001767 2.9e-06 57.4 188 29.3
Migut.B00315 Erythranthe guttata HOM05D001841 ORTHO05D001767 2.9e-06 57.4 217 30.0
BraA03t11907Z Brassica rapa HOM05D001841 ORTHO05D001767 3.8e-06 57.0 201 29.4
Carub.0004s0670 Capsella rubella HOM05D001841 ORTHO05D001767 3.8e-06 57.0 201 30.3
ATR0097G009 Amborella trichopoda HOM05D001841 ORTHO05D001767 5.0e-06 56.6 154 31.8
Thecc.08G013800 Theobroma cacao HOM05D001841 ORTHO05D001767 6.5e-06 56.2 222 30.6


User provided reference genes

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