Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G100300 Prunus persica HOM05D002419 ORTHO05D005441 7.8e-97 357.1 173 100.0
Prupe.1G205700 Prunus persica HOM05D002419 ORTHO05D005441 1.2e-94 349.7 173 97.1
MD10G1078500 Malus domestica HOM05D002419 ORTHO05D005441 1.7e-91 339.3 172 93.6
RcHm_v2.0_Chr7g0223211 Rosa chinensis HOM05D002419 ORTHO05D005441 1.6e-86 322.8 173 87.9
FvH4_5g29720 Fragaria vesca HOM05D002419 ORTHO05D005441 1.8e-85 319.3 172 86.6
FAN18G2638 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.8e-85 319.3 172 86.6
FAN13G2429 Fragaria x ananassa HOM05D002419 ORTHO05D005441 8.9e-85 317.0 173 86.1
FAN04G1346 Fragaria x ananassa HOM05D002419 ORTHO05D005441 3.4e-84 315.1 173 85.5
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea HOM05D002419 ORTHO05D005441 6.4e-83 310.8 171 84.2
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea HOM05D002419 ORTHO05D005441 3.2e-82 308.5 171 83.6
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea HOM05D002419 ORTHO05D005441 3.5e-81 305.1 166 84.9
Manes.04G024900 Manihot esculenta HOM05D002419 ORTHO05D005441 7.8e-81 303.9 171 81.9
QL01p037218 Quercus lobata HOM05D002419 ORTHO05D005441 1.7e-80 302.8 172 83.7
Duzib138G1011 Durio zibethinus HOM05D002419 ORTHO05D005441 5.1e-80 301.2 166 83.1
Ciclev10029381m.g Citrus clementina HOM05D002419 ORTHO05D005441 8.7e-80 300.4 171 80.1
FAN08G2817 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.1e-79 300.1 164 85.4
LjContig00564g0008442 Lotus japonicus HOM05D002419 ORTHO05D005441 1.1e-79 300.1 166 83.1
Thecc.01G220900 Theobroma cacao HOM05D002419 ORTHO05D005441 1.5e-79 299.7 171 80.1
Gohir.D08G057700 Gossypium hirsutum HOM05D002419 ORTHO05D005441 1.9e-79 299.3 171 81.3
Gorai.004G058900 Gossypium raimondii HOM05D002419 ORTHO05D005441 1.9e-79 299.3 171 81.3
Medtr5g087910 Medicago truncatula HOM05D002419 ORTHO05D005441 1.9e-79 299.3 166 82.5
Gohir.A08G047300 Gossypium hirsutum HOM05D002419 ORTHO05D005441 2.5e-79 298.9 171 81.9
Aqoxy5G00056 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 5.6e-79 297.7 171 80.7
Potri.006G228500 Populus trichocarpa HOM05D002419 ORTHO05D005441 9.6e-79 297.0 168 80.4
Potri.012G109400 Populus trichocarpa HOM05D002419 ORTHO05D005441 9.6e-79 297.0 168 80.4
Atru.chr3.3690 Acer truncatum HOM05D002419 ORTHO05D005441 1.3e-78 296.6 169 79.9
Duzib211G0640 Durio zibethinus HOM05D002419 ORTHO05D005441 1.3e-78 296.6 171 78.9
Eucgr.J00952 Eucalyptus grandis HOM05D002419 ORTHO05D005441 1.3e-78 296.6 171 77.2
GSVIVG01025135001 Vitis vinifera HOM05D002419 ORTHO05D005441 1.3e-78 296.6 171 79.5
Aqoxy5G03165 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 1.6e-78 296.2 171 80.1
TAR623G1637 Trochodendron aralioides HOM05D002419 ORTHO05D005441 2.1e-78 295.8 170 80.0
Glyma.16G158000 Glycine max HOM05D002419 ORTHO05D005441 2.8e-78 295.4 166 81.3
Nitab4.5_0002129g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 2.8e-78 295.4 168 81.0
Peaxi162Scf00389g00950 Petunia axillaris HOM05D002419 ORTHO05D005441 2.8e-78 295.4 171 79.5
Cpa.g.sc8.318 Carica papaya HOM05D002419 ORTHO05D005441 4.8e-78 294.7 169 79.9
Lalb_Chr10g0105941 Lupinus albus HOM05D002419 ORTHO05D005441 4.8e-78 294.7 168 80.4
CANSAT54G0974 Cannabis sativa HOM05D002419 ORTHO05D005441 6.2e-78 294.3 166 80.7
Duzib211G0283 Durio zibethinus HOM05D002419 ORTHO05D005441 6.2e-78 294.3 171 78.9
Glyma.02G076000 Glycine max HOM05D002419 ORTHO05D005441 6.2e-78 294.3 166 81.3
Cfa010014 Carpinus fangiana HOM05D002419 ORTHO05D005441 8.1e-78 293.9 171 80.1
CiPaw.13G107100 Carya illinoinensis HOM05D002419 ORTHO05D005441 8.1e-78 293.9 171 80.1
CSS0025233 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D005441 1.1e-77 293.5 168 79.8
Phvul.004G086200 Phaseolus vulgaris HOM05D002419 ORTHO05D005441 1.1e-77 293.5 166 80.7
PGR119G1746 Punica granatum HOM05D002419 ORTHO05D005441 1.4e-77 293.1 171 78.4
TPR.G1260 Trifolium pratense HOM05D002419 ORTHO05D005441 1.8e-77 292.7 166 81.3
VMungo0245G0001 Vigna mungo HOM05D002419 ORTHO05D005441 3.1e-77 292.0 166 80.7
Solyc11g072410.2 Solanum lycopersicum HOM05D002419 ORTHO05D005441 4.0e-77 291.6 168 79.8
Migut.D02183 Erythranthe guttata HOM05D002419 ORTHO05D005441 5.3e-77 291.2 166 80.7
PSO339G1519 Papaver somniferum HOM05D002419 ORTHO05D005441 6.9e-77 290.8 171 77.2
COL.COLO4_15624 Corchorus olitorius HOM05D002419 ORTHO05D005441 9.0e-77 290.4 171 78.9
MSTRG.21143 Avicennia marina HOM05D002419 ORTHO05D005441 1.2e-76 290.0 166 79.5
Sopen11g030060 Solanum pennellii HOM05D002419 ORTHO05D005441 1.2e-76 290.0 168 79.2
PGSC0003DMG400027404 Solanum tuberosum HOM05D002419 ORTHO05D005441 1.2e-76 290.0 168 79.2
Lj1g0007529 Lotus japonicus HOM05D002419 ORTHO05D005441 1.5e-76 289.7 166 81.3
MELO3C025747.2 Cucumis melo HOM05D002419 ORTHO05D005441 2.0e-76 289.3 168 77.4
Dinv32788 Davidia involucrata HOM05D002419 ORTHO05D005441 2.0e-76 289.3 171 78.4
Psat2g022600 Pisum sativum HOM05D002419 ORTHO05D005441 2.6e-76 288.9 166 81.3
Rhsim08G0250900 Rhododendron simsii HOM05D002419 ORTHO05D005441 3.4e-76 288.5 168 77.4
TWI31G0524 Tripterygium wilfordii HOM05D002419 ORTHO05D005441 5.8e-76 287.7 171 78.4
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla HOM05D002419 ORTHO05D005441 7.6e-76 287.3 171 76.6
PSO541G3116 Papaver somniferum HOM05D002419 ORTHO05D005441 7.6e-76 287.3 173 76.3
PSO675G4527 Papaver somniferum HOM05D002419 ORTHO05D005441 7.6e-76 287.3 173 76.3
Sc06g0010580 Simmondsia chinensis HOM05D002419 ORTHO05D005441 9.9e-76 287.0 168 78.0
ClCG02G020950 Citrullus lanatus HOM05D002419 ORTHO05D005441 1.7e-75 286.2 168 76.2
TPR.G11323 Trifolium pratense HOM05D002419 ORTHO05D005441 2.2e-75 285.8 167 77.8
DCAR_006045 Daucus carota HOM05D002419 ORTHO05D005441 2.9e-75 285.4 168 76.2
SalBow3G4510 Salvia bowleyana HOM05D002419 ORTHO05D005441 3.8e-75 285.0 166 77.1
Ca_01433_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 4.9e-75 284.6 166 78.3
CsaV3_6G021640 Cucumis sativus L. HOM05D002419 ORTHO05D005441 4.9e-75 284.6 168 75.6
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 6.4e-75 284.3 171 76.0
Hund28200 Selenicereus undatus HOM05D002419 ORTHO05D005441 6.4e-75 284.3 172 76.7
Hund28212 Selenicereus undatus HOM05D002419 ORTHO05D005441 6.4e-75 284.3 172 76.7
VMungo1080G0265 Vigna mungo HOM05D002419 ORTHO05D005441 6.4e-75 284.3 166 78.9
Cc04_g16270 Coffea canephora HOM05D002419 ORTHO05D005441 8.4e-75 283.9 169 76.3
Ca_11594_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 1.1e-74 283.5 166 77.7
ATR0564G250 Amborella trichopoda HOM05D002419 ORTHO05D005441 2.4e-74 282.3 168 76.2
Lsat_1_v5_gn_6_26220 Lactuca sativa HOM05D002419 ORTHO05D005441 2.4e-74 282.3 172 73.8
Os07g0412400 Oryza sativa ssp. japonica HOM05D002419 ORTHO05D005441 3.2e-74 282.0 169 74.6
CDE02G0876 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 9.3e-74 280.4 166 74.7
AUR62019559 Chenopodium quinoa HOM05D002419 ORTHO05D005441 9.3e-74 280.4 168 75.0
Ah.13g070120 Amaranthus hybridus HOM05D002419 ORTHO05D005441 2.1e-73 279.3 168 76.8
HanXRQChr13g0401511 Helianthus annuus HOM05D002419 ORTHO05D005441 4.6e-73 278.1 172 75.0
SGA_v2.0_scaffold61G21167 Striga asiatica HOM05D002419 ORTHO05D005441 4.6e-73 278.1 166 77.7
MBI18_g31602_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D005441 6.0e-73 277.7 172 74.4
Haze_23372 Corylus avellana HOM05D002419 ORTHO05D005441 1.0e-72 276.9 182 73.1
Zm00001eb305840 Zea mays HOM05D002419 ORTHO05D005441 1.0e-72 276.9 169 73.4
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 1.3e-72 276.6 159 78.6
EL10Ac5g12738 Beta vulgaris HOM05D002419 ORTHO05D005441 1.7e-72 276.2 168 76.2
CDE06G2731 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 2.3e-72 275.8 167 73.1
THA.LOC104814839 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 2.3e-72 275.8 169 74.6
BcaB08g36334 Brassica carinata HOM05D002419 ORTHO05D005441 5.1e-72 274.6 168 74.4
Sp6g21950 Schrenkiella parvula HOM05D002419 ORTHO05D005441 6.6e-72 274.2 168 74.4
BcaC02g12517 Brassica carinata HOM05D002419 ORTHO05D005441 2.5e-71 272.3 168 73.2
ECA233G1138 Erigeron canadensis HOM05D002419 ORTHO05D005441 4.3e-71 271.6 172 70.9
THA.LOC104799485 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 4.3e-71 271.6 165 77.0
HPP92_005091 Vanilla planifolia HOM05D002419 ORTHO05D005441 5.6e-71 271.2 169 72.8
A03p11170 Brassica napus HOM05D002419 ORTHO05D005441 1.3e-70 270.0 168 72.6
BraA03t10433Z Brassica rapa HOM05D002419 ORTHO05D005441 1.3e-70 270.0 168 72.6
Rhsim01G0220200 Rhododendron simsii HOM05D002419 ORTHO05D005441 1.3e-70 270.0 201 64.7
BcaB01g04654 Brassica carinata HOM05D002419 ORTHO05D005441 2.1e-70 269.2 168 72.0
Oeu037230.1 Olea europaea HOM05D002419 ORTHO05D005441 2.8e-70 268.9 162 75.3
C03p12900 Brassica napus HOM05D002419 ORTHO05D005441 4.8e-70 268.1 168 72.6
BcaC04g19694 Brassica carinata HOM05D002419 ORTHO05D005441 6.2e-70 267.7 166 73.5
Carub.0003s2777 Capsella rubella HOM05D002419 ORTHO05D005441 8.1e-70 267.3 168 70.8
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 1.1e-69 266.9 166 73.5
AL8G36960 Arabidopsis lyrata HOM05D002419 ORTHO05D005441 2.4e-69 265.8 168 71.4
BolC4t26562H Brassica oleracea HOM05D002419 ORTHO05D005441 2.4e-69 265.8 168 72.0
CARHR274010 Cardamine hirsuta HOM05D002419 ORTHO05D005441 2.4e-69 265.8 168 72.6
Thhalv10014819m.g Eutrema salsugineum HOM05D002419 ORTHO05D005441 3.1e-69 265.4 168 70.8
CAN.G1839.8 Capsicum annuum HOM05D002419 ORTHO05D005441 5.3e-69 264.6 168 70.2
SEGI_39229 Sequoiadendron giganteum HOM05D002419 ORTHO05D005441 9.0e-69 263.8 170 72.4
AUR62037871 Chenopodium quinoa HOM05D002419 ORTHO05D005441 1.2e-68 263.5 154 78.6
Peaxi162Scf00101g01011 Petunia axillaris HOM05D002419 ORTHO05D005441 1.5e-68 263.1 169 69.8
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis HOM05D002419 ORTHO05D005441 2.2e-67 259.2 164 71.3
Oeu005909.2 Olea europaea HOM05D002419 ORTHO05D005441 2.9e-67 258.8 156 76.9
BcaC08g46529 Brassica carinata HOM05D002419 ORTHO05D005441 3.8e-67 258.5 168 70.8
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 3.8e-67 258.5 168 71.4
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 3.8e-67 258.5 168 71.4
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 3.2e-66 255.4 160 74.4
Nitab4.5_0000106g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 3.2e-66 255.4 168 69.0
vmacro14463 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 4.2e-66 255.0 229 56.3
AT5G60340 Arabidopsis thaliana HOM05D002419 ORTHO05D005441 9.3e-66 253.8 168 67.9
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 9.3e-66 253.8 160 73.8
Pp3c13_9300 Physcomitrium patens HOM05D002419 ORTHO05D005441 3.5e-65 251.9 168 67.3
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 8.7e-64 247.3 150 77.3
Mapoly0012s0053 Marchantia polymorpha HOM05D002419 ORTHO05D005441 1.9e-63 246.1 169 66.3
TAR369G1020 Trochodendron aralioides HOM05D002419 ORTHO05D005441 2.1e-62 242.7 173 69.4
PGSC0003DMG400007496 Solanum tuberosum HOM05D002419 ORTHO05D005441 2.8e-62 242.3 174 64.9
Sopen06g031710 Solanum pennellii HOM05D002419 ORTHO05D005441 4.0e-61 238.4 171 63.2
CBR_g24285 Chara braunii HOM05D002419 ORTHO05D005441 4.5e-60 235.0 160 67.5
SMO367G1131 Selaginella moellendorffii HOM05D002419 ORTHO05D005441 2.2e-59 232.6 168 64.3
Haze_23913 Corylus avellana HOM05D002419 ORTHO05D005441 1.4e-58 229.9 168 66.7
Cre02.g081550 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D005441 2.3e-56 222.6 164 60.4
SHI24546 Sapria himalayana HOM05D002419 ORTHO05D005441 6.7e-56 221.1 166 60.8
PRCOL_00000283 Prasinoderma coloniale HOM05D002419 ORTHO05D005441 8.2e-54 214.2 166 58.4
Nn1g08940 Nelumbo nucifera HOM05D002419 ORTHO05D005441 4.6e-49 198.4 107 84.1
Glyma.10G187200 Glycine max HOM05D002419 ORTHO05D005441 1.1e-47 193.7 122 73.8
Aqoxy6G01924 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 1.1e-45 187.2 109 79.8
MCO01G137 Micromonas commoda HOM05D002419 ORTHO05D005441 1.5e-44 183.3 175 50.9
Nitab4.5_0001802g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 2.0e-44 183.0 111 73.9
CAN.G553.11 Capsicum annuum HOM05D002419 ORTHO05D005441 6.1e-41 171.4 100 77.0
unitig_736.g22419 Utricularia gibba HOM05D002419 ORTHO05D005441 7.9e-41 171.0 166 53.0
Nn5g28456 Nelumbo nucifera HOM05D002419 ORTHO05D005441 1.0e-40 170.6 111 70.3
Solyc06g075310.4 Solanum lycopersicum HOM05D002419 ORTHO05D005441 3.0e-40 169.1 108 72.2
CAN.G6400.1 Capsicum annuum HOM05D002419 ORTHO05D005441 1.7e-38 163.3 100 75.0
AagrBONN_evm.TU.Sc2ySwM_228.4581 Anthoceros agrestis HOM05D002419 ORTHO05D005441 2.2e-38 162.9 104 71.2
QL08p054546 Quercus lobata HOM05D002419 ORTHO05D005441 2.2e-38 162.9 170 53.5
Dinv24670 Davidia involucrata HOM05D002419 ORTHO05D005441 4.8e-38 161.8 103 70.9
CAN.G1001.14 Capsicum annuum HOM05D002419 ORTHO05D005441 9.1e-37 157.5 108 64.8
CAN.G1001.18 Capsicum annuum HOM05D002419 ORTHO05D005441 9.1e-37 157.5 108 64.8
Aa31LG4G12680 Aethionema arabicum HOM05D002419 ORTHO05D005441 9.4e-34 147.5 85 80.0
CAN.G352.38 Capsicum annuum HOM05D002419 ORTHO05D005441 2.7e-33 146.0 171 50.3
Haze_26704 Corylus avellana HOM05D002419 ORTHO05D164840 1.7e-30 136.7 165 41.2
arahy.Tifrunner.gnm1.ann1.VN8392 Arachis hypogaea HOM05D002419 ORTHO05D005441 9.1e-29 131.0 72 81.9
arahy.Tifrunner.gnm1.ann1.9EY0GB Arachis hypogaea HOM05D002419 ORTHO05D005441 2.6e-28 129.4 137 56.2
Peaxi162Scf00101g00114 Petunia axillaris HOM05D002419 ORTHO05D005441 5.2e-24 115.2 121 50.4
Cfa024491 Carpinus fangiana HOM05D002419 ORTHO05D126234 5.9e-20 101.7 182 31.3
HPP92_005089 Vanilla planifolia HOM05D002419 ORTHO05D005441 7.7e-20 101.3 62 79.0
vmacro14073 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 1.0e-19 100.9 63 73.0
PGSC0003DMG400008253 Solanum tuberosum HOM05D002419 ORTHO05D030681 5.7e-15 85.1 60 61.7
SHI24547 Sapria himalayana HOM05D002419 ORTHO05D005441 1.3e-14 84.0 79 50.6
PGSC0003DMG400035128 Solanum tuberosum HOM05D002419 ORTHO05D030681 2.4e-13 79.7 60 60.0
PGSC0003DMG400039134 Solanum tuberosum HOM05D002419 ORTHO05D030681 2.0e-12 76.6 61 62.3
Actinidia21172 Actinidia chinensis HOM05D002419 ORTHO05D055483 7.7e-12 74.7 35 91.4
vmacro14074 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 6.3e-06 55.1 48 56.2


User provided reference genes

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