Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G066300 Prunus persica HOM05D007310 ORTHO05D002375 3.0e-106 388.7 218 100.0
MD05G1054900 Malus domestica HOM05D007310 ORTHO05D002375 1.9e-55 219.9 209 63.6
Potri.001G310100 Populus trichocarpa HOM05D007310 ORTHO05D002375 2.9e-40 169.5 213 48.4
Ciclev10030152m.g Citrus clementina HOM05D007310 ORTHO05D002375 9.3e-39 164.5 208 50.0
RcHm_v2.0_Chr7g0236611 Rosa chinensis HOM05D007310 ORTHO05D002375 1.9e-36 156.8 225 49.8
Lalb_Chr09g0326871 Lupinus albus HOM05D007310 ORTHO05D002375 3.3e-36 156.0 214 40.7
Haze_10565 Corylus avellana HOM05D007310 ORTHO05D002375 2.6e-33 146.4 214 47.2
FvH4_2g13500 Fragaria vesca HOM05D007310 ORTHO05D002375 2.6e-33 146.4 225 40.4
Cfa005685 Carpinus fangiana HOM05D007310 ORTHO05D002375 5.9e-33 145.2 221 45.2
FAN27G1440 Fragaria x ananassa HOM05D007310 ORTHO05D002375 5.9e-33 145.2 221 41.6
Dinv24166 Davidia involucrata HOM05D007310 ORTHO05D002375 1.7e-32 143.7 215 48.4
arahy.Tifrunner.gnm1.ann1.KVX74B Arachis hypogaea HOM05D007310 ORTHO05D002375 2.2e-32 143.3 214 48.1
arahy.Tifrunner.gnm1.ann1.U7VQVC Arachis hypogaea HOM05D007310 ORTHO05D002375 5.0e-32 142.1 214 47.7
QL11p023211 Quercus lobata HOM05D007310 ORTHO05D002375 1.4e-31 140.6 205 48.8
CiPaw.05G032100 Carya illinoinensis HOM05D007310 ORTHO05D002375 3.2e-31 139.4 213 49.8
FAN24G3359 Fragaria x ananassa HOM05D007310 ORTHO05D004145 4.2e-31 139.0 205 41.5
TPR.G2868 Trifolium pratense HOM05D007310 ORTHO05D002375 7.2e-31 138.3 214 43.9
Thecc.02G133200 Theobroma cacao HOM05D007310 ORTHO05D002375 1.2e-30 137.5 214 46.3
FAN15G0442 Fragaria x ananassa HOM05D007310 ORTHO05D002375 2.1e-30 136.7 214 46.7
Glyma.13G042400 Glycine max HOM05D007310 ORTHO05D002375 4.6e-30 135.6 207 45.9
GSVIVG01015685001 Vitis vinifera HOM05D007310 ORTHO05D002375 6.1e-30 135.2 205 42.9
Cc02_g21140 Coffea canephora HOM05D007310 ORTHO05D002375 7.9e-30 134.8 209 45.0
Nn5g29980 Nelumbo nucifera HOM05D007310 ORTHO05D002375 3.9e-29 132.5 203 48.3
Migut.B00577 Erythranthe guttata HOM05D007310 ORTHO05D002375 1.1e-28 131.0 169 42.0
Potri.017G050000 Populus trichocarpa HOM05D007310 ORTHO05D002375 2.0e-28 130.2 189 49.2
VMungo0251G1327 Vigna mungo HOM05D007310 ORTHO05D002375 2.0e-28 130.2 197 46.7
Nitab4.5_0006625g0010 Nicotiana tabacum HOM05D007310 ORTHO05D002375 3.3e-28 129.4 203 40.9
Oeu022081.1 Olea europaea HOM05D007310 ORTHO05D002375 5.7e-28 128.6 210 41.0
Medtr4g093820 Medicago truncatula HOM05D007310 ORTHO05D002375 7.4e-28 128.3 215 41.9
PGR142G1548 Punica granatum HOM05D007310 ORTHO05D002375 1.7e-27 127.1 218 44.5
Sabra16G0196000 Salix brachista HOM05D007310 ORTHO05D002375 2.2e-27 126.7 196 43.9
Duzib248G0762 Durio zibethinus HOM05D007310 ORTHO05D002375 3.7e-27 125.9 173 48.6
Hma1.2p1_0784F.1_g217300 Hydrangea macrophylla HOM05D007310 ORTHO05D002375 3.7e-27 125.9 116 68.1
Lj4g0014623 Lotus japonicus HOM05D007310 ORTHO05D002375 1.1e-26 124.4 214 43.9
Phvul.002G211100 Phaseolus vulgaris HOM05D007310 ORTHO05D002375 1.4e-26 124.0 210 46.7
Rhsim05G0103200 Rhododendron simsii HOM05D007310 ORTHO05D002375 1.8e-26 123.6 212 42.0
Ca_18369_v3 Cicer arietinum L. HOM05D007310 ORTHO05D002375 6.9e-26 121.7 208 42.3
TWI14G0938 Tripterygium wilfordii HOM05D007310 ORTHO05D002375 1.5e-25 120.6 218 40.4
Actinidia28038 Actinidia chinensis HOM05D007310 ORTHO05D002375 2.0e-25 120.2 152 55.3
Manes.07G038100 Manihot esculenta HOM05D007310 ORTHO05D002375 2.0e-25 120.2 127 58.3
Peaxi162Scf00299g00914 Petunia axillaris HOM05D007310 ORTHO05D002375 2.0e-25 120.2 206 38.8
Manes.07G035800 Manihot esculenta HOM05D007310 ORTHO05D002375 2.6e-25 119.8 127 57.5
CSS0047922 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 3.4e-25 119.4 219 45.2
CAN.G523.36 Capsicum annuum HOM05D007310 ORTHO05D002375 7.7e-25 118.2 208 38.0
ECA234G2182 Erigeron canadensis HOM05D007310 ORTHO05D002375 7.7e-25 118.2 216 44.4
COL.COLO4_32323 Corchorus olitorius HOM05D007310 ORTHO05D002375 5.0e-24 115.5 212 40.6
Nitab4.5_0000863g0020 Nicotiana tabacum HOM05D007310 ORTHO05D002375 5.0e-24 115.5 211 40.8
Psat7g100440 Pisum sativum HOM05D007310 ORTHO05D002375 5.0e-24 115.5 218 39.9
CiPaw.06G156100 Carya illinoinensis HOM05D007310 ORTHO05D002375 2.5e-23 113.2 129 59.7
CANSAT11G0123 Cannabis sativa HOM05D007310 ORTHO05D002375 4.2e-23 112.5 206 40.3
SGA_v2.0_scaffold14G07142 Striga asiatica HOM05D007310 ORTHO05D002375 5.5e-23 112.1 119 46.2
Solyc01g105600.3 Solanum lycopersicum HOM05D007310 ORTHO05D002375 7.2e-23 111.7 203 35.5
PGSC0003DMG400012536 Solanum tuberosum HOM05D007310 ORTHO05D002375 9.4e-23 111.3 118 48.3
DCAR_021882 Daucus carota HOM05D007310 ORTHO05D002375 1.2e-22 110.9 170 46.5
Eucgr.I02631 Eucalyptus grandis HOM05D007310 ORTHO05D002375 1.6e-22 110.5 124 56.5
Sopen01g048060 Solanum pennellii HOM05D007310 ORTHO05D002375 1.6e-22 110.5 118 48.3
Glyma.08G070200 Glycine max HOM05D007310 ORTHO05D002375 2.7e-22 109.8 228 41.2
Carub.0003s2834 Capsella rubella HOM05D007310 ORTHO05D002375 3.6e-22 109.4 167 36.5
EL10Ac9g21224 Beta vulgaris HOM05D007310 ORTHO05D002375 4.7e-22 109.0 122 53.3
AUR62012905 Chenopodium quinoa HOM05D007310 ORTHO05D002375 1.4e-21 107.5 118 55.9
AUR62011722 Chenopodium quinoa HOM05D007310 ORTHO05D002375 3.0e-21 106.3 118 54.2
SalBow8G1210 Salvia bowleyana HOM05D007310 ORTHO05D002375 3.9e-21 105.9 159 36.5
HanXRQChr10g0290991 Helianthus annuus HOM05D007310 ORTHO05D002375 5.2e-21 105.5 202 39.6
MBI06_g03314_MAGBIO Magnolia biondii HOM05D007310 ORTHO05D002375 8.8e-21 104.8 160 51.2
AT2G14095 Arabidopsis thaliana HOM05D007310 ORTHO05D002375 4.4e-20 102.4 167 36.5
Cpa.g.sc42.21 Carica papaya HOM05D007310 ORTHO05D002375 5.7e-20 102.1 218 39.9
THA.LOC104804411 Tarenaya hassleriana HOM05D007310 ORTHO05D002375 1.1e-18 97.8 161 46.6
Sp3g27450 Schrenkiella parvula HOM05D007310 ORTHO05D002375 4.1e-18 95.9 167 42.5
BcaB08g34551 Brassica carinata HOM05D007310 ORTHO05D002375 5.3e-18 95.5 163 44.8
TAR376G0136 Trochodendron aralioides HOM05D007310 ORTHO05D002375 9.1e-18 94.7 218 40.4
Sabra17G0036600 Salix brachista HOM05D007310 ORTHO05D002375 1.2e-17 94.4 100 55.0
AL3G45790 Arabidopsis lyrata HOM05D007310 ORTHO05D002375 2.6e-17 93.2 167 33.5
CARHR104210 Cardamine hirsuta HOM05D007310 ORTHO05D002375 2.2e-16 90.1 128 37.5
Sabra17G0042000 Salix brachista HOM05D007310 ORTHO05D002375 2.2e-16 90.1 149 44.3
PSO761G0222 Papaver somniferum HOM05D007310 ORTHO05D002375 1.5e-15 87.4 203 30.5
ClCG09G015950 Citrullus lanatus HOM05D007310 ORTHO05D002375 3.2e-15 86.3 119 52.1
MELO3C018616.2 Cucumis melo HOM05D007310 ORTHO05D002375 3.2e-15 86.3 200 41.5
Sc08g0003780 Simmondsia chinensis HOM05D007310 ORTHO05D002375 3.2e-15 86.3 217 38.7
HPP92_019302 Vanilla planifolia HOM05D007310 ORTHO05D002375 8.0e-14 81.6 123 43.9
CsaV3_7G006790 Cucumis sativus L. HOM05D007310 ORTHO05D002375 1.0e-13 81.3 121 54.5
Duzib147G1195 Durio zibethinus HOM05D004728 ORTHO05D002375 2.3e-13 80.1 177 40.1
Sed0021578 Sechium edule HOM05D007310 ORTHO05D002375 4.0e-13 79.3 120 51.7
Thhalv10022863m.g Eutrema salsugineum HOM05D007310 ORTHO05D002375 8.8e-13 78.2 159 29.6
BcaC01g03103 Brassica carinata HOM05D007310 ORTHO05D002375 2.0e-12 77.0 162 37.0
Gohir.D02G199400 Gossypium hirsutum HOM05D007310 ORTHO05D002375 3.3e-12 76.3 111 48.6
Nn1g05467 Nelumbo nucifera HOM05D004728 ORTHO05D002375 1.7e-11 73.9 118 46.6
C03p56020 Brassica napus HOM05D007310 ORTHO05D002375 4.8e-11 72.4 163 37.4
BolC3t17888H Brassica oleracea HOM05D007310 ORTHO05D002375 4.8e-11 72.4 163 37.4
PSO700G0139 Papaver somniferum HOM05D007310 ORTHO05D002375 4.8e-11 72.4 144 34.7
BraA03t13650Z Brassica rapa HOM05D007310 ORTHO05D002375 6.3e-11 72.0 162 35.2
CSS0048944 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 6.3e-11 72.0 60 58.3
CSS0049063 Camellia sinensis var. sinensis HOM05D004728 ORTHO05D002375 8.2e-11 71.6 172 37.2
Atru.chr13.1111 Acer truncatum HOM05D004728 ORTHO05D002375 1.1e-10 71.2 104 46.2
Gorai.005G224000 Gossypium raimondii HOM05D007310 ORTHO05D002375 1.1e-10 71.2 178 35.4
PGR042G1769 Punica granatum HOM05D004728 ORTHO05D002375 1.4e-10 70.9 120 43.3
Atru.chr6.1218 Acer truncatum HOM05D007310 ORTHO05D002375 1.8e-10 70.5 87 57.5
A03p45150 Brassica napus HOM05D007310 ORTHO05D002375 2.4e-10 70.1 162 37.7
Aa31LG8G12500 Aethionema arabicum HOM05D007310 ORTHO05D002375 3.1e-10 69.7 122 31.1
FAN19G1066 Fragaria x ananassa HOM05D004728 ORTHO05D002375 4.1e-10 69.3 106 47.2
FAN23G2235 Fragaria x ananassa HOM05D004728 ORTHO05D002375 4.1e-10 69.3 106 47.2
PSO761G0559 Papaver somniferum HOM05D015253 ORTHO05D002375 4.1e-10 69.3 140 30.0
Duzib132G0922 Durio zibethinus HOM05D007310 ORTHO05D002375 5.3e-10 68.9 87 37.9
FAN28G1290 Fragaria x ananassa HOM05D004728 ORTHO05D002375 5.3e-10 68.9 154 37.0
Dinv07081 Davidia involucrata HOM05D004728 ORTHO05D002375 7.0e-10 68.6 171 37.4
FAN26G1362 Fragaria x ananassa HOM05D004728 ORTHO05D002375 7.0e-10 68.6 106 46.2
CSS0024408 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 1.2e-09 67.8 71 53.5
Atru.chr6.1219 Acer truncatum HOM05D058201 ORTHO05D037924 2.0e-09 67.0 114 36.8
FvH4_1g20180 Fragaria vesca HOM05D004728 ORTHO05D002375 2.0e-09 67.0 103 47.6
RcHm_v2.0_Chr2g0112261 Rosa chinensis HOM05D004728 ORTHO05D002375 2.0e-09 67.0 133 36.1
Duzib093G2113 Durio zibethinus HOM05D004728 ORTHO05D002375 2.7e-09 66.6 105 42.9
RcHm_v2.0_Chr2g0112251 Rosa chinensis HOM05D004728 ORTHO05D002375 3.5e-09 66.2 106 47.2
Cfa017900 Carpinus fangiana HOM05D004728 ORTHO05D002375 4.5e-09 65.9 119 39.5
HanXRQChr17g0556311 Helianthus annuus HOM05D004728 ORTHO05D002375 5.9e-09 65.5 133 39.1
Oeu045990.1 Olea europaea HOM05D004728 ORTHO05D002375 5.9e-09 65.5 172 33.1
Sabra02G0079700 Salix brachista HOM05D004728 ORTHO05D002375 5.9e-09 65.5 154 39.6
Ah.01g024090 Amaranthus hybridus HOM05D007310 ORTHO05D002375 7.7e-09 65.1 203 36.5
Lsat_1_v5_gn_1_2840 Lactuca sativa HOM05D004728 ORTHO05D002375 1.0e-08 64.7 117 42.7
TAR625G1009 Trochodendron aralioides HOM05D007310 ORTHO05D002375 1.0e-08 64.7 192 27.1
Actinidia10351 Actinidia chinensis HOM05D007310 ORTHO05D002375 1.7e-08 63.9 98 57.1
Actinidia33119 Actinidia chinensis HOM05D004728 ORTHO05D002375 2.9e-08 63.2 120 41.7
MD15G1317700 Malus domestica HOM05D004728 ORTHO05D002375 2.9e-08 63.2 166 34.3
FAN19G1373 Fragaria x ananassa HOM05D004728 ORTHO05D002375 6.5e-08 62.0 169 32.0
Gorai.009G233200 Gossypium raimondii HOM05D004728 ORTHO05D002375 6.5e-08 62.0 116 44.0
Aqoxy6G00704 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 8.5e-08 61.6 178 33.7
Gorai.005G094700 Gossypium raimondii HOM05D004728 ORTHO05D002375 8.5e-08 61.6 126 42.1
Lsat_1_v5_gn_9_73441 Lactuca sativa HOM05D004728 ORTHO05D002375 8.5e-08 61.6 125 28.8
unitig_0.g2111 Utricularia gibba HOM05D004728 ORTHO05D002375 8.5e-08 61.6 100 48.0
Aqoxy476s001 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 1.1e-07 61.2 135 37.8
ECA232G3092 Erigeron canadensis HOM05D004728 ORTHO05D045252 1.1e-07 61.2 173 32.9
Lj4A95G12 Lonicera japonica HOM05D004728 ORTHO05D002375 1.1e-07 61.2 130 39.2
MD08G1189800 Malus domestica HOM05D004728 ORTHO05D002375 1.1e-07 61.2 118 34.7
CANSAT25G2000 Cannabis sativa HOM05D004728 ORTHO05D002375 1.9e-07 60.5 91 48.4
Duzib116G0314 Durio zibethinus HOM05D004728 ORTHO05D002375 1.9e-07 60.5 105 42.9
Thecc.08G100900 Theobroma cacao HOM05D004728 ORTHO05D002375 3.2e-07 59.7 120 40.0
unitig_747.g21502 Utricularia gibba HOM05D004728 ORTHO05D002375 4.2e-07 59.3 96 49.0
Zm00001eb027840 Zea mays HOM05D007310 ORTHO05D002375 4.2e-07 59.3 97 41.2
Gorai.009G233300 Gossypium raimondii HOM05D004728 ORTHO05D002375 5.5e-07 58.9 122 37.7
Gohir.A02G076900 Gossypium hirsutum HOM05D004728 ORTHO05D002375 7.2e-07 58.5 103 44.7
Lj4A95G11 Lonicera japonica HOM05D004728 ORTHO05D002375 7.2e-07 58.5 97 43.3
Hund14099 Selenicereus undatus HOM05D004728 ORTHO05D002375 7.2e-07 58.5 107 44.9
Migut.C01097 Erythranthe guttata HOM05D004728 ORTHO05D002375 9.4e-07 58.2 117 37.6
Gohir.A05G223100 Gossypium hirsutum HOM05D004728 ORTHO05D002375 1.6e-06 57.4 107 39.3
Gohir.D05G225800 Gossypium hirsutum HOM05D004728 ORTHO05D002375 2.1e-06 57.0 122 35.2
Lsat_1_v5_gn_5_108861 Lactuca sativa HOM05D007310 ORTHO05D002375 2.1e-06 57.0 63 46.0
Hund26995 Selenicereus undatus HOM05D004728 ORTHO05D002375 2.1e-06 57.0 118 40.7
CANSAT01G0157 Cannabis sativa HOM05D004728 ORTHO05D002375 2.7e-06 56.6 99 42.4
COL.COLO4_11993 Corchorus olitorius HOM05D004728 ORTHO05D002375 2.7e-06 56.6 102 46.1
ATR0684G111 Amborella trichopoda HOM05D007310 ORTHO05D002375 3.6e-06 56.2 89 55.1
Sc01g0000880 Simmondsia chinensis HOM05D004728 ORTHO05D002375 4.7e-06 55.8 107 40.2
TAR376G0070 Trochodendron aralioides HOM05D015253 ORTHO05D002375 4.7e-06 55.8 163 25.2
COL.COLO4_27301 Corchorus olitorius HOM05D004728 ORTHO05D002375 6.1e-06 55.5 121 43.0
DCAR_003461 Daucus carota HOM05D004728 ORTHO05D002375 6.1e-06 55.5 117 26.5
Duzib041G0412 Durio zibethinus HOM05D004728 ORTHO05D002375 6.1e-06 55.5 99 44.4
Migut.L00163 Erythranthe guttata HOM05D004728 ORTHO05D002375 6.1e-06 55.5 104 27.9
Gohir.D02G084100 Gossypium hirsutum HOM05D004728 ORTHO05D002375 6.1e-06 55.5 119 41.2
Rhsim06G0077100 Rhododendron simsii HOM05D004728 ORTHO05D002375 6.1e-06 55.5 104 41.3
HanXRQChr17g0556321 Helianthus annuus HOM05D004728 ORTHO05D002375 8.0e-06 55.1 119 23.5
Zm00001eb081280 Zea mays HOM05D021312 ORTHO05D012887 8.0e-06 55.1 120 26.7


User provided reference genes

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