Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 4.9e-299 1030.4 533 100.0
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 2.6e-252 875.2 523 87.6
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 5.8e-252 874.0 520 87.9
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 5.0e-243 844.3 515 84.5
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.5e-239 832.8 516 82.8
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 5.7e-239 830.9 516 82.6
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.3e-238 829.7 516 82.8
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.1e-237 826.6 516 82.4
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 5.3e-237 824.3 517 82.6
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 5.9e-236 820.8 516 82.2
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 3.2e-234 815.1 522 80.8
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 2.7e-233 812.0 543 78.3
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 7.9e-233 810.4 515 81.6
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 2.3e-232 808.9 517 80.5
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 2.0e-231 805.8 515 81.4
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 7.4e-231 803.9 518 81.1
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 2.2e-230 802.4 518 80.1
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 1.4e-229 799.7 517 80.1
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 2.4e-229 798.9 519 81.5
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 5.3e-229 797.7 517 81.8
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 1.2e-228 796.6 517 79.9
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 2.2e-227 792.3 528 78.8
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 2.9e-227 792.0 494 83.2
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 3.8e-227 791.6 519 79.0
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 5.0e-227 791.2 528 78.8
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 6.5e-227 790.8 516 79.7
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 1.1e-226 790.0 516 78.9
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 8.0e-225 783.9 517 79.1
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 2.3e-224 782.3 519 79.2
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 3.9e-224 781.6 518 78.2
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 6.7e-224 780.8 518 78.8
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 8.8e-224 780.4 516 79.8
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 8.8e-224 780.4 519 79.4
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 1.1e-223 780.0 519 79.6
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 2.6e-223 778.9 516 79.3
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 9.7e-223 776.9 518 80.5
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 1.1e-221 773.5 536 77.2
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 3.1e-221 771.9 514 79.0
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 3.5e-220 768.5 513 78.0
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 5.0e-219 764.6 521 77.9
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 1.9e-218 762.7 518 76.8
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 4.2e-218 761.5 518 77.0
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 5.5e-218 761.1 517 77.8
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 1.6e-217 759.6 518 78.4
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 4.7e-217 758.1 518 75.9
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 8.0e-217 757.3 516 76.7
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 1.0e-216 756.9 516 77.1
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 2.3e-216 755.7 515 76.1
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 2.3e-216 755.7 516 76.9
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 6.7e-216 754.2 518 78.8
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.5e-215 753.1 516 77.3
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 7.5e-215 750.7 518 75.5
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 3.7e-214 748.4 533 74.9
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 4.5e-212 741.5 519 76.5
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 5.0e-211 738.0 517 74.7
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 1.1e-210 736.9 521 76.6
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 1.4e-208 729.9 519 73.8
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 2.3e-208 729.2 518 74.9
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 1.5e-207 726.5 518 74.7
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 9.8e-207 723.8 521 75.6
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 3.1e-205 718.8 518 73.7
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 4.1e-205 718.4 518 72.8
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 9.1e-205 717.2 527 73.6
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 1.0e-203 713.8 519 73.4
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 1.3e-203 713.4 519 74.8
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 1.3e-203 713.4 517 74.7
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 8.6e-203 710.7 515 71.5
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 8.6e-203 710.7 603 64.8
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 8.6e-203 710.7 522 74.7
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 2.5e-202 709.1 519 73.0
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 4.2e-202 708.4 519 73.0
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 1.6e-201 706.4 529 72.4
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 2.1e-201 706.1 532 70.9
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.5e-199 699.9 474 77.8
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 1.3e-198 696.8 520 72.5
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 2.2e-198 696.0 520 72.3
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 3.7e-198 695.3 509 72.7
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 1.7e-195 686.4 427 82.0
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 2.9e-195 685.6 532 69.4
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 2.8e-193 679.1 518 70.3
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 6.1e-193 677.9 514 70.2
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 2.3e-192 676.0 516 70.3
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 4.0e-192 675.2 516 70.5
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 5.2e-192 674.9 519 69.9
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 1.5e-191 673.3 518 69.9
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 1.3e-190 670.2 515 70.7
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 1.9e-189 666.4 527 68.3
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 1.6e-188 663.3 509 69.0
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 1.6e-188 663.3 517 68.3
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 1.1e-186 657.1 494 71.3
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 1.1e-186 657.1 494 71.3
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 1.1e-186 657.1 494 71.3
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 5.6e-186 654.8 516 68.6
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 7.3e-186 654.4 522 67.4
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 9.5e-186 654.1 517 70.8
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 6.2e-185 651.4 494 70.4
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 1.1e-184 650.6 539 65.1
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 4.0e-184 648.7 494 70.2
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 4.0e-184 648.7 531 67.8
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 5.2e-184 648.3 499 70.7
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 2.0e-183 646.4 519 67.2
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 9.8e-183 644.0 471 73.0
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 1.3e-182 643.7 520 70.4
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 2.9e-182 642.5 680 55.7
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 2.5e-178 629.4 473 71.9
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 1.4e-176 623.6 494 66.4
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 3.7e-174 615.5 518 66.4
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 1.9e-170 603.2 530 63.0
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 8.7e-155 551.2 538 59.1
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 1.6e-153 547.0 396 74.7
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 5.7e-130 468.8 507 55.8
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 5.7e-130 468.8 507 55.8
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 5.7e-130 468.8 507 55.8
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 3.3e-122 443.0 267 82.8
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 6.3e-121 438.7 545 47.9
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 2.6e-119 433.3 348 67.0
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 5.5e-117 425.6 538 48.9
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 1.6e-108 397.5 445 53.0
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 2.6e-82 310.5 198 80.3
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 1.3e-78 298.1 161 91.3
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 1.1e-72 278.5 154 88.3
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 4.3e-69 266.5 498 40.2
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 7.3e-69 265.8 170 78.2
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 4.6e-63 246.5 432 40.0
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 4.6e-63 246.5 195 70.8
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 1.3e-62 245.0 199 67.3
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 2.3e-62 244.2 176 78.4
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 2.3e-62 244.2 271 54.2
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 1.1e-59 235.3 289 49.8
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 9.2e-56 222.2 271 51.3
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 3.8e-49 200.3 143 74.8
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 4.9e-49 199.9 134 72.4
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 2.8e-44 184.1 178 64.0
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 9.0e-43 179.1 117 79.5
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 1.1e-40 172.2 101 84.2
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 2.7e-39 167.5 551 30.1
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 5.1e-38 163.3 345 38.6
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 1.9e-37 161.4 156 59.0
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 8.1e-36 156.0 165 58.2
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 1.6e-28 131.7 68 89.7
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 1.7e-25 121.7 113 57.5
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 1.6e-23 115.2 78 70.5
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 6.7e-22 109.8 58 93.1
Lsat_1_v5_gn_7_64781 Lactuca sativa HOM05D004857 ORTHO05D005663 1.1e-19 102.4 72 65.3
TAR626G1095 Trochodendron aralioides HOM05D004857 ORTHO05D005663 2.0e-18 98.2 71 74.6
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 3.4e-18 97.4 59 81.4
Rhsim09G0048200 Rhododendron simsii HOM05D004857 ORTHO05D005663 1.3e-17 95.5 65 69.2
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 2.1e-15 88.2 114 46.5
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 5.7e-13 80.1 86 52.3
PSO832G3983 Papaver somniferum HOM05D004857 ORTHO05D005663 4.1e-11 73.9 70 51.4
MCO14G054 Micromonas commoda HOM05D004857 ORTHO05D005663 1.3e-09 68.9 130 31.5
PSO407G0399 Papaver somniferum HOM05D001929 ORTHO05D002426 1.8e-06 58.5 61 50.8
PSO541G5242 Papaver somniferum HOM05D004857 ORTHO05D005663 6.7e-06 56.6 61 49.2


User provided reference genes

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