Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G119000 Prunus persica HOM05D007410 ORTHO05D009500 8.2e-160 568.5 830 100.0
MD14G1014400 Malus domestica HOM05D007410 ORTHO05D009500 4.1e-111 406.8 830 90.6
MD12G1016300 Malus domestica HOM05D007410 ORTHO05D009500 1.1e-95 355.5 829 87.9
FAN02G1401 Fragaria x ananassa HOM05D007410 ORTHO05D009500 4.3e-68 263.8 832 82.2
RcHm_v2.0_Chr3g0471971 Rosa chinensis HOM05D007410 ORTHO05D009500 2.4e-66 258.1 832 82.8
FvH4_6g17750 Fragaria vesca HOM05D007410 ORTHO05D009500 9.0e-66 256.1 240 59.2
FAN14G2442 Fragaria x ananassa HOM05D007410 ORTHO05D009500 8.4e-64 249.6 239 58.2
Cfa016527 Carpinus fangiana HOM05D007410 ORTHO05D009500 6.0e-62 243.4 244 58.2
FAN05G1927 Fragaria x ananassa HOM05D007410 ORTHO05D009500 7.4e-60 236.5 786 84.1
FAN09G1720 Fragaria x ananassa HOM05D007410 ORTHO05D009500 9.6e-60 236.1 173 69.9
QL02p025248 Quercus lobata HOM05D007410 ORTHO05D009500 1.5e-49 202.2 198 60.6
Haze_19526 Corylus avellana HOM05D007410 ORTHO05D009500 4.5e-49 200.7 208 58.2
TWI60G0552 Tripterygium wilfordii HOM05D007410 ORTHO05D009500 1.5e-41 175.6 194 53.6
Dinv34010 Davidia involucrata HOM05D007410 ORTHO05D009500 2.2e-40 171.8 195 51.8
Eucgr.A01557 Eucalyptus grandis HOM05D007410 ORTHO05D009500 4.2e-39 167.5 220 47.7
FAN09G0790 Fragaria x ananassa HOM05D007410 ORTHO05D009500 6.1e-38 163.7 177 81.4
TAR365G0607 Trochodendron aralioides HOM05D007410 ORTHO05D009500 2.2e-35 155.2 180 50.0
CiPaw.09G007900 Carya illinoinensis HOM05D007410 ORTHO05D009500 3.1e-34 151.4 261 40.6
Peaxi162Scf00802g00013 Petunia axillaris HOM05D007410 ORTHO05D009500 6.9e-34 150.2 207 42.0
Oeu023854.1 Olea europaea HOM05D007410 ORTHO05D009500 9.1e-34 149.8 200 43.5
Nitab4.5_0026813g0010 Nicotiana tabacum HOM05D007410 ORTHO05D009500 2.2e-32 145.2 185 48.1
SGA_v2.0_scaffold75G24801 Striga asiatica HOM05D007410 ORTHO05D009500 5.0e-32 144.1 215 39.5
Aqoxy1G00955 Aquilegia oxysepala HOM05D007410 ORTHO05D009500 3.2e-31 141.4 253 37.5
Hma1.2p1_0084F.1_g043130 Hydrangea macrophylla HOM05D007410 ORTHO05D009500 3.2e-31 141.4 125 60.0
Nitab4.5_0001290g0100 Nicotiana tabacum HOM05D007410 ORTHO05D009500 5.5e-31 140.6 187 47.1
Nitab4.5_0005621g0120 Nicotiana tabacum HOM05D007410 ORTHO05D009500 1.6e-30 139.0 173 48.0
DCAR_020784 Daucus carota HOM05D007410 ORTHO05D009500 7.9e-30 136.7 155 45.8
Dinv39608 Davidia involucrata HOM05D007410 ORTHO05D009500 1.8e-29 135.6 177 67.8
Lalb_Chr01g0018371 Lupinus albus HOM05D007410 ORTHO05D009500 3.0e-29 134.8 209 42.6
MELO3C006839.2 Cucumis melo HOM05D007410 ORTHO05D009500 3.9e-29 134.4 220 41.4
Sed0018174 Sechium edule HOM05D007410 ORTHO05D009500 6.7e-29 133.7 212 43.9
CSS0026121 Camellia sinensis var. sinensis HOM05D007410 ORTHO05D009500 2.6e-28 131.7 153 52.9
Rhsim03G0082200 Rhododendron simsii HOM05D007410 ORTHO05D009500 7.4e-28 130.2 190 44.7
ClCG05G007520 Citrullus lanatus HOM05D007410 ORTHO05D009500 1.7e-27 129.0 183 42.1
HanXRQChr17g0534281 Helianthus annuus HOM05D007410 ORTHO05D009500 2.8e-27 128.3 195 40.0
DCAR_013956 Daucus carota HOM05D007410 ORTHO05D009500 3.7e-27 127.9 168 42.9
PGR004G1775 Punica granatum HOM05D007410 ORTHO05D009500 3.7e-27 127.9 159 50.3
CsaV3_3G016400 Cucumis sativus L. HOM05D007410 ORTHO05D009500 1.1e-26 126.3 222 37.8
Atru.BG.129.p Acer truncatum HOM05D007410 ORTHO05D009500 4.1e-26 124.4 131 55.7
Oeu058028.1 Olea europaea HOM05D007410 ORTHO05D009500 3.5e-25 121.3 141 47.5
Aa31LG3G15130 Aethionema arabicum HOM05D007410 ORTHO05D009500 7.7e-25 120.2 157 42.7
Potri.010G249800 Populus trichocarpa HOM05D007410 ORTHO05D009500 7.7e-25 120.2 162 46.3
Sp6g31520 Schrenkiella parvula HOM05D007410 ORTHO05D009500 1.0e-24 119.8 203 41.4
VMungo1383G0444 Vigna mungo HOM05D007410 ORTHO05D009500 1.7e-24 119.0 155 47.7
Carub.0006s1061 Capsella rubella HOM05D007410 ORTHO05D009500 2.9e-24 118.2 188 41.0
AT5G12100 Arabidopsis thaliana HOM05D007410 ORTHO05D009500 6.5e-24 117.1 179 43.6
Glyma.03G190300 Glycine max HOM05D007410 ORTHO05D009500 6.5e-24 117.1 163 71.8
Atru.chr12.1036 Acer truncatum HOM05D007410 ORTHO05D009500 5.5e-23 114.0 140 46.4
CANSAT80G0494 Cannabis sativa HOM05D007410 ORTHO05D009500 5.5e-23 114.0 172 44.2
Duzib093G0520 Durio zibethinus HOM05D007410 ORTHO05D009500 5.5e-23 114.0 177 70.6
Phvul.001G185900 Phaseolus vulgaris HOM05D007410 ORTHO05D009500 5.5e-23 114.0 154 46.8
BolC9t59308H Brassica oleracea HOM05D007410 ORTHO05D009500 7.2e-23 113.6 213 39.0
Sc18g0006010 Simmondsia chinensis HOM05D007410 ORTHO05D009500 9.4e-23 113.2 130 50.0
Sabra10G0194300 Salix brachista HOM05D001909 ORTHO05D007079 1.2e-22 112.8 173 69.4
BcaNung06328 Brassica carinata HOM05D007410 ORTHO05D009500 2.1e-22 112.1 220 38.2
Migut.J00989 Erythranthe guttata HOM05D007410 ORTHO05D009500 3.6e-22 111.3 152 46.1
HanXRQChr17g0535541 Helianthus annuus HOM05D007410 ORTHO05D009500 4.7e-22 110.9 151 43.0
Manes.09G058000 Manihot esculenta HOM05D007410 ORTHO05D009500 8.0e-22 110.2 175 68.6
Glyma.19G190733 Glycine max HOM05D007410 ORTHO05D009500 1.0e-21 109.8 163 69.3
Nn8g39918 Nelumbo nucifera HOM05D007410 ORTHO05D009500 1.8e-21 109.0 142 46.5
CARHR201020 Cardamine hirsuta HOM05D007410 ORTHO05D009500 2.3e-21 108.6 167 43.7
Cc06_g05130 Coffea canephora HOM05D007410 ORTHO05D009500 5.2e-21 107.5 199 39.7
Gohir.A01G210000 Gossypium hirsutum HOM05D007410 ORTHO05D009500 5.2e-21 107.5 172 69.2
Solyc12g099840.1 Solanum lycopersicum HOM05D007410 ORTHO05D009500 6.7e-21 107.1 176 40.9
A10p25700 Brassica napus HOM05D007410 ORTHO05D009500 8.8e-21 106.7 155 42.6
BraA10t44635Z Brassica rapa HOM05D007410 ORTHO05D009500 8.8e-21 106.7 155 43.2
C09p64770 Brassica napus HOM05D007410 ORTHO05D009500 1.5e-20 105.9 156 41.7
Sopen12g034470 Solanum pennellii HOM05D007410 ORTHO05D009500 1.5e-20 105.9 176 40.9
PGSC0003DMG400004719 Solanum tuberosum HOM05D007410 ORTHO05D009500 1.5e-20 105.9 180 40.6
Gohir.D01G198900 Gossypium hirsutum HOM05D007410 ORTHO05D009500 2.0e-20 105.5 172 68.6
Gorai.002G243300 Gossypium raimondii HOM05D007410 ORTHO05D009500 2.0e-20 105.5 172 68.6
Psat2g007640 Pisum sativum HOM05D007410 ORTHO05D009500 2.6e-20 105.1 157 70.7
AL6G44470 Arabidopsis lyrata HOM05D007410 ORTHO05D009500 9.7e-20 103.2 120 44.2
Medtr7g103600 Medicago truncatula HOM05D007410 ORTHO05D009500 9.7e-20 103.2 157 69.4
CAN.G575.91 Capsicum annuum HOM05D007410 ORTHO05D009500 3.7e-19 101.3 174 63.2
COL.COLO4_29826 Corchorus olitorius HOM05D007410 ORTHO05D009500 1.4e-18 99.4 72 65.3
AUR62013683 Chenopodium quinoa HOM05D007410 ORTHO05D009500 4.1e-18 97.8 173 65.9
Atru.chr12.1030 Acer truncatum HOM05D007410 ORTHO05D009500 5.3e-18 97.4 95 58.9
Ca_08961_v3 Cicer arietinum L. HOM05D007410 ORTHO05D009500 5.3e-18 97.4 157 69.4
Ciclev10033972m.g Citrus clementina HOM05D007410 ORTHO05D009500 2.0e-17 95.5 133 44.4
TPR.G28359 Trifolium pratense HOM05D007410 ORTHO05D009500 2.0e-17 95.5 208 34.6
Glyma.19G190667 Glycine max HOM05D007410 ORTHO05D009500 2.7e-17 95.1 131 45.8
Lj1g0017625 Lotus japonicus HOM05D007410 ORTHO05D009500 2.9e-16 91.7 117 47.0
Lj9E304T4 Lonicera japonica HOM05D007410 ORTHO05D009500 5.0e-16 90.9 183 35.5
AUR62004183 Chenopodium quinoa HOM05D007410 ORTHO05D009500 4.2e-15 87.8 180 34.4
EL10Ac1g00861 Beta vulgaris HOM05D007410 ORTHO05D009500 9.4e-15 86.7 171 32.2
SHI27720 Sapria himalayana HOM05D007410 ORTHO05D009500 1.6e-14 85.9 129 44.2
CDE01G0670 Ceratophyllum demersum HOM05D003192 ORTHO05D003596 3.6e-14 84.7 183 32.2
PSO384G3142 Papaver somniferum HOM05D025533 ORTHO05D021545 8.0e-14 83.6 99 43.4
HPP92_024556 Vanilla planifolia HOM05D005651 ORTHO05D006877 8.0e-14 83.6 193 34.2
SGA_v2.0_scaffold40G15416 Striga asiatica HOM05D007410 ORTHO05D009500 3.0e-13 81.6 132 38.6
ECA233G1087 Erigeron canadensis HOM05D001398 ORTHO05D001467 3.4e-12 78.2 91 45.1
PSO135G0775 Papaver somniferum HOM05D025533 ORTHO05D021545 4.4e-12 77.8 99 40.4
Zm00001eb178770 Zea mays HOM05D022935 ORTHO05D020958 2.8e-11 75.1 210 31.4
Cpa.g.sc117.70 Carica papaya HOM05D007410 ORTHO05D009500 3.7e-11 74.7 177 63.3
Zm00001eb167210 Zea mays HOM05D022935 ORTHO05D020958 1.4e-10 72.8 232 29.7
Thecc.05G080100 Theobroma cacao HOM05D007410 ORTHO05D009500 2.4e-10 72.0 52 61.5
Thhalv10015810m.g Eutrema salsugineum HOM05D007410 ORTHO05D009500 9.1e-10 70.1 100 41.0
Migut.G01107 Erythranthe guttata HOM05D007212 ORTHO05D009094 1.2e-09 69.7 127 28.3
Migut.G01143 Erythranthe guttata HOM05D007212 ORTHO05D009094 1.2e-09 69.7 127 28.3
PSO832G3824 Papaver somniferum HOM05D007155 ORTHO05D003034 1.6e-09 69.3 128 30.5
Aqoxy3G04282 Aquilegia oxysepala HOM05D000891 ORTHO05D000761 2.7e-09 68.6 141 27.7
PSO210G6432 Papaver somniferum HOM05D007155 ORTHO05D003034 2.7e-09 68.6 128 29.7
Cc07_g09260 Coffea canephora HOM05D000891 ORTHO05D000761 3.5e-09 68.2 134 27.6
Migut.H00180 Erythranthe guttata HOM05D000891 ORTHO05D000761 4.5e-09 67.8 120 30.0
Oeu041026.1 Olea europaea HOM05D007212 ORTHO05D009094 4.5e-09 67.8 151 29.8
Sp7g34340 Schrenkiella parvula HOM05D000891 ORTHO05D000761 4.5e-09 67.8 134 27.6
C02p07450 Brassica napus HOM05D000424 ORTHO05D000355 2.2e-08 65.5 145 30.3
BolC2t06676H Brassica oleracea HOM05D000424 ORTHO05D000355 2.2e-08 65.5 145 30.3
Actinidia39878 Actinidia chinensis HOM05D007410 ORTHO05D009500 2.9e-08 65.1 61 54.1
Lalb_Chr01g0006871 Lupinus albus HOM05D002453 ORTHO05D008746 3.8e-08 64.7 123 27.6
Ah.05g174660 Amaranthus hybridus HOM05D007410 ORTHO05D009500 5.0e-08 64.3 163 60.1
Atru.chr3.547 Acer truncatum HOM05D000891 ORTHO05D000761 8.5e-08 63.5 173 27.7
CAN.G53.43 Capsicum annuum HOM05D000891 ORTHO05D000761 8.5e-08 63.5 141 27.0
Duzib264G1293 Durio zibethinus HOM05D000891 ORTHO05D000761 8.5e-08 63.5 170 25.3
Sp6g29030 Schrenkiella parvula HOM05D000424 ORTHO05D000355 8.5e-08 63.5 145 29.0
arahy.Tifrunner.gnm1.ann1.C93D89 Arachis hypogaea HOM05D007212 ORTHO05D009094 1.1e-07 63.2 203 26.6
Migut.D02115 Erythranthe guttata HOM05D007212 ORTHO05D009094 1.1e-07 63.2 127 26.8
Actinidia05689 Actinidia chinensis HOM05D007639 ORTHO05D009509 1.5e-07 62.8 151 25.8
arahy.Tifrunner.gnm1.ann1.0V2A2H Arachis hypogaea HOM05D007212 ORTHO05D009094 1.5e-07 62.8 203 26.6
AT4G36680 Arabidopsis thaliana HOM05D000891 ORTHO05D000761 1.9e-07 62.4 154 26.0
BcaC03g13436 Brassica carinata HOM05D000424 ORTHO05D000355 1.9e-07 62.4 193 28.5
FAN03G3455 Fragaria x ananassa HOM05D007212 ORTHO05D009094 1.9e-07 62.4 116 32.8
FAN21G0605 Fragaria x ananassa HOM05D007212 ORTHO05D009094 1.9e-07 62.4 112 32.1
Lalb_Chr01g0001381 Lupinus albus HOM05D007212 ORTHO05D009094 1.9e-07 62.4 199 27.6
TAR626G1324 Trochodendron aralioides HOM05D000001 ORTHO05D000003 1.9e-07 62.4 134 32.1
Migut.A01169 Erythranthe guttata HOM05D007410 ORTHO05D009500 2.5e-07 62.0 172 58.1
Phvul.011G027200 Phaseolus vulgaris HOM05D007212 ORTHO05D009094 2.5e-07 62.0 166 28.9
AL7G14330 Arabidopsis lyrata HOM05D000891 ORTHO05D000761 3.2e-07 61.6 154 25.3
Duzib147G0693 Durio zibethinus HOM05D000891 ORTHO05D000761 4.2e-07 61.2 170 24.7
CDE12G0214 Ceratophyllum demersum HOM05D000891 ORTHO05D000761 5.5e-07 60.8 133 26.3
Rhsim08G0155900 Rhododendron simsii HOM05D002453 ORTHO05D002107 5.5e-07 60.8 128 27.3
HanXRQChr16g0518411 Helianthus annuus HOM05D002453 ORTHO05D002107 7.2e-07 60.5 128 30.5
SMO196G0165 Selaginella moellendorffii HOM05D005973 ORTHO05D007285 7.2e-07 60.5 138 30.4
Gohir.A12G065300 Gossypium hirsutum HOM05D000891 ORTHO05D000761 9.4e-07 60.1 121 27.3
Gohir.D12G065400 Gossypium hirsutum HOM05D000891 ORTHO05D000761 9.4e-07 60.1 170 25.9
Gorai.008G068700 Gossypium raimondii HOM05D000891 ORTHO05D000761 9.4e-07 60.1 170 25.9
HanXRQChr02g0058171 Helianthus annuus HOM05D007410 ORTHO05D009500 9.4e-07 60.1 57 42.1
Sc07g0000240 Simmondsia chinensis HOM05D000891 ORTHO05D000761 9.4e-07 60.1 130 26.2
DCAR_019601 Daucus carota HOM05D002453 ORTHO05D008746 1.2e-06 59.7 125 27.2
arahy.Tifrunner.gnm1.ann1.VA1KA7 Arachis hypogaea HOM05D007208 ORTHO05D009090 1.6e-06 59.3 121 27.3
CDE06G2834 Ceratophyllum demersum HOM05D002453 ORTHO05D002107 1.6e-06 59.3 132 25.8
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 2.1e-06 58.9 132 30.3
MD17G1234700 Malus domestica HOM05D007173 ORTHO05D009151 2.7e-06 58.5 135 28.9
BcaC05g29619 Brassica carinata HOM05D000001 ORTHO05D000003 3.6e-06 58.2 130 29.2
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 3.6e-06 58.2 148 29.1
MELO3C017551.2 Cucumis melo HOM05D000891 ORTHO05D000761 4.7e-06 57.8 133 25.6
Potri.008G108300 Populus trichocarpa HOM05D002444 ORTHO05D009235 4.7e-06 57.8 142 30.3
Thecc.01G038900 Theobroma cacao HOM05D000891 ORTHO05D000761 4.7e-06 57.8 170 23.5
TWI38G0441 Tripterygium wilfordii HOM05D000891 ORTHO05D000761 4.7e-06 57.8 135 26.7
Ca_19008_v3 Cicer arietinum L. HOM05D007212 ORTHO05D009094 6.1e-06 57.4 97 30.9
VMungo0540G2446 Vigna mungo HOM05D000001 ORTHO05D051593 6.1e-06 57.4 131 29.8
Aqoxy5G04021 Aquilegia oxysepala HOM05D000162 ORTHO05D000090 8.0e-06 57.0 114 28.1
Cc10_g12890 Coffea canephora HOM05D000001 ORTHO05D000003 8.0e-06 57.0 112 34.8
Rhsim07G0073200 Rhododendron simsii HOM05D000162 ORTHO05D000090 8.0e-06 57.0 116 31.0


User provided reference genes

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