Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 0.0e+00 3159.8 1688 100.0
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 0.0e+00 2719.9 1688 88.8
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 0.0e+00 1597.0 2001 53.9
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 0.0e+00 1557.3 1947 53.0
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 0.0e+00 1294.6 1806 48.6
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 0.0e+00 1262.7 1844 46.0
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 0.0e+00 1255.0 1836 46.5
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 0.0e+00 1254.2 1837 46.5
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 0.0e+00 1245.7 1848 46.2
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 0.0e+00 1229.5 1837 46.4
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 1.8e-275 953.7 1867 41.2
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 5.2e-262 909.1 1881 39.4
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 6.6e-257 892.1 1845 41.1
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 2.2e-196 691.0 1833 36.9
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 7.4e-192 676.0 1764 36.4
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 3.2e-187 660.6 1806 35.3
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 7.9e-186 656.0 1884 34.7
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 3.8e-172 610.5 1727 34.9
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 2.3e-169 601.3 2058 32.0
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 2.0e-168 598.2 1795 34.7
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 7.4e-168 596.3 1914 33.0
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 2.1e-162 578.2 1811 34.5
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 1.2e-160 572.4 530 71.3
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 2.4e-158 564.7 1775 33.6
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 8.0e-154 549.7 1760 32.9
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 1.8e-153 548.5 1925 32.5
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 4.0e-153 547.4 1712 31.8
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 1.2e-152 545.8 1758 31.2
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 8.3e-151 539.7 1788 32.7
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 2.7e-149 534.6 1747 33.4
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 1.7e-148 531.9 1731 34.3
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 3.8e-148 530.8 1865 32.7
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 5.0e-148 530.4 1745 33.2
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 6.6e-148 530.0 1925 31.2
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 1.1e-142 512.7 2091 31.0
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 5.0e-140 503.8 1855 32.2
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 4.3e-139 500.7 1289 36.5
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 3.2e-134 484.6 1945 31.2
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 7.8e-133 479.9 465 72.7
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 3.6e-130 471.1 1322 36.5
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 1.3e-127 462.6 1807 31.2
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 3.0e-124 451.4 1781 31.4
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 2.8e-122 444.9 1767 31.8
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 3.6e-122 444.5 1725 31.7
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 1.1e-121 443.0 1712 31.3
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 2.6e-120 438.3 1748 30.9
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 8.4e-119 433.3 1802 29.9
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 8.9e-113 413.3 1764 30.3
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 9.9e-112 409.8 1832 30.1
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 1.2e-109 402.9 1841 29.7
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 1.8e-105 389.0 1959 28.8
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 9.0e-105 386.7 1780 28.6
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 1.5e-104 386.0 1716 30.0
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 2.0e-104 385.6 1810 29.1
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 2.6e-104 385.2 1756 27.7
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 2.4e-102 378.6 1760 30.5
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 2.1e-101 375.6 1849 27.7
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 1.1e-99 369.8 1584 32.0
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 2.1e-98 365.5 1815 30.5
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 2.4e-97 362.1 1767 28.4
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 1.7e-95 355.9 926 34.1
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 5.5e-94 350.9 1766 29.0
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 1.8e-89 335.9 880 39.1
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 9.0e-89 333.6 1987 27.7
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 4.5e-88 331.3 1799 27.8
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 3.8e-87 328.2 1812 28.4
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 9.3e-86 323.6 944 37.8
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 4.6e-85 321.2 505 56.6
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 4.3e-83 314.7 880 37.7
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 4.3e-83 314.7 1634 27.2
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 5.7e-83 314.3 874 37.4
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 9.6e-83 313.5 461 53.6
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 1.4e-81 309.7 1772 28.4
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 3.1e-81 308.5 1864 27.5
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 4.1e-81 308.1 1472 27.8
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 5.0e-79 301.2 1842 27.6
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 1.9e-78 299.3 908 38.1
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 1.3e-76 293.1 841 36.4
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 3.9e-76 291.6 1865 26.6
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 9.7e-75 287.0 1806 26.9
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 9.7e-75 287.0 1575 26.2
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 4.8e-74 284.6 841 36.0
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 8.2e-74 283.9 1881 26.7
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 1.4e-73 283.1 1959 28.0
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 9.4e-70 270.4 1790 27.9
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 9.7e-67 260.4 1840 27.7
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 4.1e-65 255.0 1835 27.2
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 6.9e-65 254.2 1821 27.0
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 9.1e-65 253.8 1732 26.8
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 7.7e-64 250.8 1747 24.7
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 3.8e-63 248.4 1860 26.2
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 7.2e-62 244.2 665 40.5
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 1.2e-61 243.4 864 29.5
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 2.0e-59 236.1 1799 26.1
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 2.6e-59 235.7 1825 24.2
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 2.6e-59 235.7 1780 26.5
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 2.4e-57 229.2 1802 25.7
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 3.1e-57 228.8 853 35.3
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 5.3e-57 228.0 1772 23.7
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 7.0e-57 227.6 1935 26.1
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 2.0e-56 226.1 1798 23.9
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 6.5e-55 221.1 1743 26.0
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 3.2e-54 218.8 630 35.6
MD00G1168200 Malus domestica HOM05D004836 ORTHO05D005150 2.4e-49 202.6 199 59.8
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 5.9e-48 198.0 670 39.0
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 2.2e-47 196.1 1759 25.0
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 2.9e-47 195.7 665 37.0
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 2.3e-44 186.0 699 32.8
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 1.5e-43 183.3 669 36.5
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 3.4e-43 182.2 667 36.6
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 4.4e-43 181.8 1910 25.2
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 1.3e-42 180.3 676 33.4
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 3.5e-40 172.2 292 41.4
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 2.3e-36 159.5 177 49.2
TWI39G0060 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 5.2e-36 158.3 264 37.5
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 1.5e-35 156.8 256 62.1
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 3.4e-35 155.6 843 32.7
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 5.4e-33 148.3 704 27.3
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 3.5e-24 119.0 1466 22.2
BcaB08g35941 Brassica carinata HOM05D004836 ORTHO05D005150 1.0e-23 117.5 310 33.2
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 5.0e-23 115.2 394 32.2
vmacro11593 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 8.0e-21 107.8 265 50.9
PSO541G5284 Papaver somniferum HOM05D004836 ORTHO05D005150 8.9e-20 104.4 2001 24.1
PSO675G3612 Papaver somniferum HOM05D004836 ORTHO05D005150 5.8e-19 101.7 1998 23.8
Actinidia30399 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.6e-16 93.6 109 51.4
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 3.5e-16 92.4 406 24.4
TPR.G26295 Trifolium pratense HOM05D004836 ORTHO05D005150 1.3e-15 90.5 180 37.8
SEGI_04158 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 6.8e-12 78.2 252 36.1
Cpa.g.c38368 Carica papaya HOM05D004836 ORTHO05D005150 1.2e-11 77.4 52 67.3
Psat2g132080 Pisum sativum HOM05D004836 ORTHO05D005150 7.5e-11 74.7 172 32.6
BcaB08g35940 Brassica carinata HOM05D004836 ORTHO05D005150 3.7e-10 72.4 398 26.4
Lj1A890T51 Lonicera japonica HOM05D004836 ORTHO05D005150 8.3e-10 71.2 982 21.6
PSO063G5346 Papaver somniferum HOM05D004836 ORTHO05D005150 3.2e-09 69.3 176 36.9
HPP92_018201 Vanilla planifolia HOM05D004836 ORTHO05D005150 5.4e-09 68.6 636 24.7
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 1.2e-08 67.4 233 33.5
Actinidia30401 Actinidia chinensis HOM05D004836 ORTHO05D005150 2.1e-08 66.6 53 58.5
BcaC01g06394 Brassica carinata HOM05D004836 ORTHO05D005150 2.1e-08 66.6 338 27.2
SEGI_26437 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 4.6e-08 65.5 508 26.4
Pp3c1_42830 Physcomitrium patens HOM05D014698 ORTHO05D016532 3.9e-07 62.4 59 62.7
CDE02G2584 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 5.1e-07 62.0 53 66.0
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 5.1e-07 62.0 60 55.0
RhsimUnG0156400 Rhododendron simsii HOM05D000074 ORTHO05D001262 6.6e-07 61.6 54 53.7
HanXRQChr03g0074021 Helianthus annuus HOM05D004836 ORTHO05D005150 1.1e-06 60.8 50 58.0
CBR_g22984 Chara braunii HOM05D014698 ORTHO05D016532 5.6e-06 58.5 82 40.2


User provided reference genes

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