Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G332700 Prunus persica HOM05D004923 ORTHO05D005940 4.9e-242 841.3 623 100.0
RcHm_v2.0_Chr3g0453461 Rosa chinensis HOM05D004923 ORTHO05D005940 7.4e-105 385.6 647 56.1
MD04G1212300 Malus domestica HOM05D004923 ORTHO05D005940 1.9e-100 370.9 637 49.3
MD12G1227100 Malus domestica HOM05D004923 ORTHO05D005940 3.1e-95 353.6 607 55.2
FAN09G1938 Fragaria x ananassa HOM05D004923 ORTHO05D005940 4.1e-95 353.2 651 53.5
FAN02G0211 Fragaria x ananassa HOM05D004923 ORTHO05D005940 8.5e-93 345.5 646 51.2
FvH4_6g04961 Fragaria vesca HOM05D004923 ORTHO05D005940 1.6e-91 341.3 646 52.9
Cfa006523 Carpinus fangiana HOM05D004923 ORTHO05D005940 2.7e-91 340.5 649 40.4
FAN05G2617 Fragaria x ananassa HOM05D004923 ORTHO05D005940 2.3e-90 337.4 647 53.2
FAN05G5260 Fragaria x ananassa HOM05D004923 ORTHO05D005940 2.3e-90 337.4 647 53.3
CiPaw.07G012700 Carya illinoinensis HOM05D004923 ORTHO05D005940 1.3e-88 331.6 652 44.2
Haze_04263 Corylus avellana HOM05D004923 ORTHO05D005940 1.8e-87 327.8 618 41.9
FAN14G0846 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.0e-85 322.0 632 47.6
QL03p002854 Quercus lobata HOM05D004923 ORTHO05D005940 1.3e-85 321.6 652 46.3
QL03p003582 Quercus lobata HOM05D004923 ORTHO05D005940 5.9e-78 296.2 645 50.4
Gorai.004G244000 Gossypium raimondii HOM05D004923 ORTHO05D005940 3.8e-61 240.4 681 43.2
Hma1.2p1_0702F.1_g206060 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 1.1e-60 238.8 608 33.7
Gohir.D08G229800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.5e-60 238.4 681 43.0
Hma1.2p1_2453F.1_g322410 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 1.5e-60 238.4 597 34.0
Gohir.A08G212800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 8.0e-59 232.6 667 39.3
CANSAT54G1324 Cannabis sativa HOM05D004923 ORTHO05D005940 1.2e-57 228.8 770 38.4
Thecc.05G297900 Theobroma cacao HOM05D004923 ORTHO05D005940 2.0e-57 228.0 671 46.1
Manes.09G161700 Manihot esculenta HOM05D004923 ORTHO05D005940 5.7e-57 226.5 641 37.1
Duzib177G0588 Durio zibethinus HOM05D004923 ORTHO05D005940 1.3e-56 225.3 684 45.0
Ciclev10000602m.g Citrus clementina HOM05D004923 ORTHO05D005940 2.0e-54 218.0 641 32.9
CSS0000935 Camellia sinensis var. sinensis HOM05D004923 ORTHO05D005940 1.1e-52 212.2 652 34.5
Actinidia19810 Actinidia chinensis HOM05D004923 ORTHO05D005940 1.9e-52 211.5 645 39.4
arahy.Tifrunner.gnm1.ann1.96LETV Arachis hypogaea HOM05D004923 ORTHO05D005940 3.2e-52 210.7 582 36.9
GSVIVG01022015001 Vitis vinifera HOM05D004923 ORTHO05D005940 4.2e-52 210.3 641 36.3
ClCG02G016160 Citrullus lanatus HOM05D004923 ORTHO05D005940 2.0e-49 201.4 639 28.3
Sed0008414 Sechium edule HOM05D004923 ORTHO05D005940 1.1e-47 195.7 638 29.8
Dinv40234 Davidia involucrata HOM05D004923 ORTHO05D005940 2.4e-47 194.5 567 29.6
arahy.Tifrunner.gnm1.ann1.VPW6I2 Arachis hypogaea HOM05D004923 ORTHO05D005940 4.5e-46 190.3 632 35.4
TWI56G0946 Tripterygium wilfordii HOM05D004923 ORTHO05D005940 7.8e-46 189.5 641 32.6
CiPaw.08G168100 Carya illinoinensis HOM05D004923 ORTHO05D005940 1.7e-45 188.3 194 56.7
Potri.013G028600 Populus trichocarpa HOM05D004923 ORTHO05D005940 2.3e-45 188.0 639 36.2
Sabra05G0039600 Salix brachista HOM05D004923 ORTHO05D005940 5.0e-45 186.8 582 31.1
CARHR185930 Cardamine hirsuta HOM05D004923 ORTHO05D005940 5.6e-44 183.3 633 31.8
Rhsim05G0146200 Rhododendron simsii HOM05D004923 ORTHO05D005940 9.5e-44 182.6 628 36.0
Sabra13G0028900 Salix brachista HOM05D004923 ORTHO05D005940 1.2e-43 182.2 644 36.0
Eucgr.B02029 Eucalyptus grandis HOM05D004923 ORTHO05D005940 1.6e-43 181.8 643 32.3
Glyma.10G157900 Glycine max HOM05D004923 ORTHO05D005940 4.7e-43 180.3 635 33.9
MELO3C004316.2 Cucumis melo HOM05D004923 ORTHO05D005940 5.2e-42 176.8 642 28.0
Sopen01g053000 Solanum pennellii HOM05D004923 ORTHO05D005940 4.4e-41 173.7 675 27.1
Lalb_Chr02g0148481 Lupinus albus HOM05D004923 ORTHO05D005940 2.2e-40 171.4 590 28.8
Cc02_g32730 Coffea canephora HOM05D004923 ORTHO05D005940 6.4e-40 169.9 660 35.3
arahy.Tifrunner.gnm1.ann1.S9CKM7 Arachis hypogaea HOM05D004923 ORTHO05D005940 1.8e-39 168.3 575 36.2
Lj5g0013750 Lotus japonicus HOM05D004923 ORTHO05D005940 5.4e-39 166.8 708 35.6
PGSC0003DMG400001646 Solanum tuberosum HOM05D004923 ORTHO05D005940 5.4e-39 166.8 674 33.7
Sc06g0003440 Simmondsia chinensis HOM05D004923 ORTHO05D005940 9.2e-39 166.0 658 27.8
AT5G27330 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 3.5e-38 164.1 647 31.8
Gohir.A11G260600 Gossypium hirsutum HOM05D004923 ORTHO05D005940 5.9e-38 163.3 617 32.6
Nn4g26097 Nelumbo nucifera HOM05D004923 ORTHO05D005940 1.0e-37 162.5 577 31.7
MSTRG.12109 Avicennia marina HOM05D004923 ORTHO05D005940 1.3e-37 162.2 654 26.8
Glyma.20G230700 Glycine max HOM05D004923 ORTHO05D005940 1.7e-37 161.8 578 39.1
Carub.0006s2521 Capsella rubella HOM05D004923 ORTHO05D005940 3.0e-37 161.0 627 33.8
Gohir.D11G270900 Gossypium hirsutum HOM05D004923 ORTHO05D005940 4.3e-36 157.1 656 35.4
THA.LOC104818671 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 1.2e-35 155.6 650 29.7
TAR362G1085 Trochodendron aralioides HOM05D004923 ORTHO05D005940 1.6e-35 155.2 762 28.1
HanXRQChr05g0158391 Helianthus annuus HOM05D004923 ORTHO05D005940 2.8e-35 154.5 593 30.9
AL3G15510 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 4.7e-35 153.7 638 32.6
Thhalv10003823m.g Eutrema salsugineum HOM05D004923 ORTHO05D005940 1.4e-34 152.1 634 35.0
Gorai.007G291400 Gossypium raimondii HOM05D004923 ORTHO05D005940 1.4e-34 152.1 656 39.5
Sp3g03950 Schrenkiella parvula HOM05D004923 ORTHO05D005940 3.1e-34 151.0 638 31.5
BcaNung04359 Brassica carinata HOM05D004923 ORTHO05D005940 1.2e-33 149.1 577 29.6
Solyc01g110960.4 Solanum lycopersicum HOM05D004923 ORTHO05D005940 5.8e-33 146.7 600 26.2
Atru.chr2.532 Acer truncatum HOM05D004923 ORTHO05D005940 2.9e-32 144.4 652 36.3
Sp2g20550 Schrenkiella parvula HOM05D004923 ORTHO05D005940 2.9e-32 144.4 594 29.0
AT3G05130 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 1.4e-31 142.1 638 32.6
Carub.0003s0437 Capsella rubella HOM05D004923 ORTHO05D005940 1.4e-31 142.1 640 37.0
MBI18_g16961_MAGBIO Magnolia biondii HOM05D004923 ORTHO05D005940 3.5e-30 137.5 691 28.5
Cpa.g.sc84.119 Carica papaya HOM05D004923 ORTHO05D005940 7.8e-30 136.3 592 27.5
Phvul.007G183300 Phaseolus vulgaris HOM05D004923 ORTHO05D005940 1.3e-29 135.6 191 45.0
COL.COLO4_13559 Corchorus olitorius HOM05D004923 ORTHO05D005940 5.0e-29 133.7 642 39.3
DCAR_029454 Daucus carota HOM05D004923 ORTHO05D005940 8.6e-29 132.9 642 38.2
SGA_v2.0_scaffold104G30165 Striga asiatica HOM05D004923 ORTHO05D005940 1.2e-27 129.0 643 26.3
C05p62100 Brassica napus HOM05D004923 ORTHO05D005940 2.1e-27 128.3 635 33.5
BolC5t34868H Brassica oleracea HOM05D004923 ORTHO05D005940 2.1e-27 128.3 635 33.5
PGR083G0910 Punica granatum HOM05D004923 ORTHO05D005940 2.8e-27 127.9 581 30.1
SalBow6G2889 Salvia bowleyana HOM05D004923 ORTHO05D005940 2.8e-27 127.9 651 28.3
AUR62000899 Chenopodium quinoa HOM05D004923 ORTHO05D005940 4.0e-26 124.0 596 25.0
Manes.08G124600 Manihot esculenta HOM05D004923 ORTHO05D005940 4.0e-26 124.0 265 35.5
Oeu020434.1 Olea europaea HOM05D004923 ORTHO05D005940 3.4e-25 120.9 653 30.5
VMungo0720G2495 Vigna mungo HOM05D004923 ORTHO05D005940 7.5e-25 119.8 169 41.4
C07p40590 Brassica napus HOM05D004923 ORTHO05D005940 1.3e-24 119.0 628 25.2
AL6G39740 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 2.2e-24 118.2 634 32.2
CsaV3_2G004820 Cucumis sativus L. HOM05D004923 ORTHO05D005940 2.2e-24 118.2 631 26.0
BcaNung02477 Brassica carinata HOM05D004923 ORTHO05D005940 1.1e-23 115.9 656 27.9
AUR62005075 Chenopodium quinoa HOM05D004923 ORTHO05D005940 1.0e-21 109.4 595 23.5
Ca_10079_v3 Cicer arietinum L. HOM05D004923 ORTHO05D005940 3.0e-21 107.8 728 33.4
Migut.A01112 Erythranthe guttata HOM05D004923 ORTHO05D005940 3.0e-21 107.8 658 33.0
Atru.chr5.1952 Acer truncatum HOM05D000107 ORTHO05D000062 1.1e-20 105.9 197 37.1
BraA06t26683Z Brassica rapa HOM05D004923 ORTHO05D005940 1.5e-20 105.5 137 46.7
TPR.G2744 Trifolium pratense HOM05D004923 ORTHO05D005940 2.5e-20 104.8 167 41.9
A06p37630 Brassica napus HOM05D004923 ORTHO05D005940 4.7e-19 100.5 137 44.5
Psat6g148400 Pisum sativum HOM05D004923 ORTHO05D005940 4.7e-19 100.5 157 42.0
Nn4g26098 Nelumbo nucifera HOM05D004923 ORTHO05D005940 1.8e-18 98.6 713 32.4
THA.LOC104821702 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 3.1e-18 97.8 636 27.5
Medtr1g082215 Medicago truncatula HOM05D004923 ORTHO05D005940 6.8e-18 96.7 716 29.6
BraA05t23008Z Brassica rapa HOM05D004923 ORTHO05D005940 1.5e-17 95.5 644 28.3
Lj8C55T15 Lonicera japonica HOM05D004923 ORTHO05D005940 1.5e-17 95.5 231 32.0
Lj9P678T27 Lonicera japonica HOM05D004923 ORTHO05D005940 1.5e-17 95.5 429 29.8
Nitab4.5_0000003g0420 Nicotiana tabacum HOM05D004923 ORTHO05D005940 1.5e-17 95.5 674 36.4
Oeu019603.1 Olea europaea HOM05D004923 ORTHO05D005940 2.6e-17 94.7 194 34.5
PSO170G6876 Papaver somniferum HOM05D004923 ORTHO05D005940 2.6e-17 94.7 146 40.4
ECA246G1289 Erigeron canadensis HOM05D004923 ORTHO05D005940 5.8e-17 93.6 192 34.9
HanXRQChr15g0493471 Helianthus annuus HOM05D004923 ORTHO05D005940 5.8e-17 93.6 582 27.1
CAN.G1329.24 Capsicum annuum HOM05D004923 ORTHO05D005940 2.9e-16 91.3 671 35.6
Potri.005G040500 Populus trichocarpa HOM05D004923 ORTHO05D005940 2.9e-16 91.3 639 29.4
BolC7t44596H Brassica oleracea HOM05D004923 ORTHO05D005940 6.4e-16 90.1 646 32.5
Peaxi162Scf00016g10236 Petunia axillaris HOM05D004923 ORTHO05D005940 1.1e-15 89.4 262 32.4
CARHR079450 Cardamine hirsuta HOM05D004923 ORTHO05D005940 3.2e-15 87.8 191 34.0
Aqoxy2G03170 Aquilegia oxysepala HOM05D004923 ORTHO05D005940 9.2e-15 86.3 709 24.5
PSO302G0039 Papaver somniferum HOM05D004923 ORTHO05D005940 2.1e-14 85.1 135 39.3
Aa31LG11G9060 Aethionema arabicum HOM05D004923 ORTHO05D005940 6.0e-14 83.6 664 34.5
ECA233G0604 Erigeron canadensis HOM05D004923 ORTHO05D005940 1.0e-13 82.8 567 24.3
QL01p001837 Quercus lobata HOM05D004923 ORTHO05D005940 1.0e-13 82.8 98 45.9
A05p42440 Brassica napus HOM05D004923 ORTHO05D005940 1.7e-13 82.0 634 34.1
PSO151G0007 Papaver somniferum HOM05D004923 ORTHO05D005940 1.7e-13 82.0 193 31.6
PSO151G0141 Papaver somniferum HOM05D004923 ORTHO05D005940 1.7e-13 82.0 193 31.6
unitig_8.g3020 Utricularia gibba HOM05D004923 ORTHO05D005940 1.7e-13 82.0 590 22.2
Ah.04g159880 Amaranthus hybridus HOM05D004923 ORTHO05D005940 3.0e-13 81.3 600 25.3
PSO151G0084 Papaver somniferum HOM05D004923 ORTHO05D005940 3.0e-13 81.3 192 33.3
CDE02G2189 Ceratophyllum demersum HOM05D056443 ORTHO05D005940 2.6e-09 68.2 209 27.3
SHI18226 Sapria himalayana HOM05D004923 ORTHO05D005940 3.4e-09 67.8 183 34.4
Nitab4.5_0008768g0010 Nicotiana tabacum HOM05D004923 ORTHO05D005940 2.9e-08 64.7 671 35.6
COL.COLO4_23513 Corchorus olitorius HOM05D004923 ORTHO05D005940 3.8e-08 64.3 111 43.2
Haze_23464 Corylus avellana HOM05D004923 ORTHO05D005940 1.1e-07 62.8 103 47.6
Ah.04g159900 Amaranthus hybridus HOM05D004923 ORTHO05D005940 1.9e-07 62.0 197 28.4
CDE09G0746 Ceratophyllum demersum HOM05D056443 ORTHO05D005940 3.2e-07 61.2 648 23.3
Ah.04g159890 Amaranthus hybridus HOM05D004923 ORTHO05D005940 4.2e-07 60.8 68 47.1
Lsat_1_v5_gn_5_38100 Lactuca sativa HOM05D004923 ORTHO05D005940 1.6e-06 58.9 645 20.8
AL3G15330 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 6.0e-06 57.0 154 27.3
Peaxi162Scf00351g00530 Petunia axillaris HOM05D004923 ORTHO05D005940 7.8e-06 56.6 171 31.0


User provided reference genes

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