Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 9.8e-225 783.1 385 100.0
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 1.3e-187 659.8 385 84.2
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 4.5e-185 651.4 385 83.6
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 1.7e-176 622.9 382 79.3
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 1.8e-165 586.3 381 75.3
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 3.0e-165 585.5 379 75.7
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 8.7e-165 583.9 381 75.1
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.9e-164 582.8 379 75.5
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 5.5e-159 564.7 405 70.1
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 7.9e-150 534.3 359 71.6
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 2.2e-147 526.2 359 70.8
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 2.4e-146 522.7 366 69.9
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 7.7e-145 517.7 385 67.0
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 1.7e-144 516.5 387 67.7
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 4.7e-142 508.4 379 65.7
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 2.0e-140 503.1 386 66.3
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 1.3e-139 500.4 357 68.3
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 1.7e-139 500.0 373 66.8
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 5.9e-137 491.5 374 65.2
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 2.9e-136 489.2 378 63.8
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 2.9e-136 489.2 384 65.1
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 1.9e-135 486.5 378 64.8
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 2.5e-135 486.1 383 65.3
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 3.2e-135 485.7 372 65.1
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 4.7e-134 481.9 367 63.8
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 6.1e-134 481.5 379 64.1
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 4.0e-133 478.8 379 63.3
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 5.2e-133 478.4 379 63.9
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 3.3e-132 475.7 373 62.7
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 5.7e-132 474.9 388 61.6
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 2.2e-131 473.0 371 62.5
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 2.8e-131 472.6 351 66.1
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 3.7e-131 472.2 377 63.4
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 5.3e-130 468.4 380 62.4
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 2.0e-129 466.5 361 65.4
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 5.9e-129 464.9 356 64.3
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 8.0e-126 454.5 369 61.0
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 3.4e-124 449.1 371 61.5
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 5.7e-124 448.4 376 60.4
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 3.7e-123 445.7 374 60.2
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 1.2e-121 440.7 347 63.1
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 4.5e-121 438.7 340 63.5
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 5.5e-119 431.8 387 58.4
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 2.1e-118 429.9 347 62.2
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 6.1e-118 428.3 373 59.0
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 6.1e-118 428.3 365 61.4
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 2.0e-116 423.3 439 51.7
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 4.4e-116 422.2 382 56.5
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 7.5e-116 421.4 299 68.2
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 2.2e-115 419.9 325 64.9
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 3.7e-115 419.1 383 58.0
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 4.9e-115 418.7 372 57.5
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 6.3e-115 418.3 321 65.4
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 8.3e-115 417.9 347 60.2
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 1.1e-114 417.5 347 60.8
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 1.4e-114 417.2 325 64.0
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 2.4e-114 416.4 318 62.9
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 7.0e-114 414.8 381 55.9
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 7.0e-114 414.8 377 57.3
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 2.0e-113 413.3 386 56.0
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 2.0e-113 413.3 377 57.3
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 5.9e-113 411.8 362 59.9
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 7.8e-113 411.4 339 60.8
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 1.3e-112 410.6 339 60.8
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 1.7e-112 410.2 325 64.3
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 2.3e-112 409.8 330 62.1
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 2.3e-112 409.8 374 59.1
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 2.3e-112 409.8 317 64.0
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 3.8e-112 409.1 328 63.4
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 3.8e-112 409.1 273 71.8
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.9e-111 406.8 273 71.8
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 2.5e-111 406.4 323 63.8
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 3.3e-111 406.0 384 55.2
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 9.5e-111 404.4 374 58.6
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 2.1e-110 403.3 376 56.9
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 6.1e-110 401.7 346 56.4
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 1.0e-109 401.0 327 62.1
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 1.4e-109 400.6 322 62.7
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 1.8e-109 400.2 367 57.5
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 1.2e-108 397.5 383 55.1
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 7.5e-108 394.8 322 62.1
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 7.5e-108 394.8 384 56.0
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 9.8e-108 394.4 285 67.7
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 1.7e-107 393.7 374 55.3
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 1.7e-107 393.7 379 54.1
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.9e-107 392.9 316 63.3
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 4.9e-107 392.1 377 55.4
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 4.9e-107 392.1 291 66.7
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 6.4e-107 391.7 369 55.0
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 4.1e-106 389.0 279 66.7
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 4.1e-106 389.0 375 54.1
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 5.4e-106 388.7 372 54.6
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 9.2e-106 387.9 385 53.2
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 4.6e-105 385.6 377 54.6
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 7.8e-105 384.8 325 60.9
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 2.3e-104 383.3 319 61.4
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 1.1e-103 380.9 371 53.6
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 1.9e-103 380.2 335 57.9
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 7.3e-103 378.3 386 52.3
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 1.1e-101 374.4 327 57.5
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 1.2e-100 370.9 327 57.5
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 1.5e-100 370.5 371 53.1
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 7.5e-100 368.2 346 56.4
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.7e-96 357.1 316 58.9
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 3.0e-96 356.3 296 57.8
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 4.3e-95 352.4 318 54.7
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 1.6e-94 350.5 343 54.2
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 1.7e-91 340.5 319 53.9
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 8.3e-91 338.2 322 56.8
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 6.0e-89 332.0 272 60.7
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 1.3e-83 314.3 321 50.5
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 3.0e-80 303.1 283 53.0
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 3.9e-80 302.8 285 53.7
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 2.9e-75 286.6 262 57.3
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 3.6e-70 269.6 196 68.4
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 5.1e-64 249.2 240 52.9
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 3.3e-63 246.5 300 43.3
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 2.1e-62 243.8 279 45.2
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 1.2e-60 238.0 270 44.8
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 4.5e-60 236.1 289 43.3
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 5.8e-60 235.7 279 47.3
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 2.4e-58 230.3 278 42.4
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 2.7e-57 226.9 293 42.3
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 1.2e-52 211.5 139 74.1
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.1e-50 204.9 165 61.2
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 7.1e-50 202.2 139 71.2
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 2.5e-47 193.7 173 59.0
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 9.1e-29 132.1 86 72.1
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 6.1e-25 119.4 86 69.8
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 3.7e-22 110.2 104 54.8
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.2e-20 105.1 178 40.4
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 1.5e-18 98.2 120 47.5
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 1.5e-18 98.2 120 47.5
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 9.4e-18 95.5 77 67.5
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 1.4e-16 91.7 91 53.8
RcHm_v2.0_Chr6g0303391 Rosa chinensis HOM05D005476 ORTHO05D006886 9.7e-15 85.5 58 74.1
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 5.0e-11 73.2 116 34.5
SalBow5G5594 Salvia bowleyana HOM05D005476 ORTHO05D006886 8.5e-11 72.4 71 52.1
BolC4t22609H Brassica oleracea HOM05D005476 ORTHO05D032808 5.7e-07 59.7 56 57.1
BcaC02g11914 Brassica carinata HOM05D005476 ORTHO05D032808 2.2e-06 57.8 56 55.4
ATR0691G298 Amborella trichopoda HOM05D000559 ORTHO05D000596 8.3e-06 55.8 122 32.0
SEGI_01492 Sequoiadendron giganteum HOM05D000559 ORTHO05D000596 8.3e-06 55.8 117 30.8


User provided reference genes

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