Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G023600 Prunus persica HOM05D006682 ORTHO05D008627 2.6e-141 505.4 258 100.0
MD11G1029300 Malus domestica HOM05D006682 ORTHO05D008627 1.5e-115 419.9 242 88.0
MD03G1024200 Malus domestica HOM05D006682 ORTHO05D008627 3.6e-114 415.2 250 85.2
RcHm_v2.0_Chr5g0077121 Rosa chinensis HOM05D006682 ORTHO05D008627 7.3e-107 391.0 266 78.9
FvH4_3g43060 Fragaria vesca HOM05D006682 ORTHO05D008627 2.1e-106 389.4 262 79.0
FAN25G2895 Fragaria x ananassa HOM05D006682 ORTHO05D008627 8.0e-106 387.5 263 78.7
FAN21G3201 Fragaria x ananassa HOM05D006682 ORTHO05D008627 1.8e-105 386.3 263 78.3
FAN11G1823 Fragaria x ananassa HOM05D006682 ORTHO05D008627 4.0e-105 385.2 264 78.4
FAN16G2773 Fragaria x ananassa HOM05D006682 ORTHO05D008627 6.4e-103 377.9 265 76.6
PGR102G2323 Punica granatum HOM05D006682 ORTHO05D008627 6.4e-95 351.3 250 73.2
Dinv36276 Davidia involucrata HOM05D006682 ORTHO05D008627 2.1e-93 346.3 254 72.4
COL.COLO4_14494 Corchorus olitorius HOM05D006682 ORTHO05D008627 1.0e-92 344.0 252 71.0
Gohir.D01G218300 Gossypium hirsutum HOM05D006682 ORTHO05D008627 1.0e-92 344.0 253 71.1
Gorai.002G265000 Gossypium raimondii HOM05D006682 ORTHO05D008627 1.0e-92 344.0 253 71.1
Haze_23101 Corylus avellana HOM05D006682 ORTHO05D008627 3.9e-92 342.0 249 73.5
Eucgr.B03679 Eucalyptus grandis HOM05D006682 ORTHO05D008627 3.9e-92 342.0 257 71.6
Manes.06G166600 Manihot esculenta HOM05D006682 ORTHO05D008627 5.1e-92 341.7 264 72.0
Thecc.05G010600 Theobroma cacao HOM05D006682 ORTHO05D008627 6.6e-92 341.3 253 71.9
Gohir.A01G228400 Gossypium hirsutum HOM05D006682 ORTHO05D008627 1.5e-91 340.1 253 71.1
Cfa009742 Carpinus fangiana HOM05D006682 ORTHO05D008627 4.3e-91 338.6 248 72.2
QL01p005270 Quercus lobata HOM05D006682 ORTHO05D008627 4.7e-90 335.1 244 72.5
Cpa.g.sc21.74 Carica papaya HOM05D006682 ORTHO05D008627 8.1e-90 334.3 258 70.9
CiPaw.13G163300 Carya illinoinensis HOM05D006682 ORTHO05D008627 1.4e-89 333.6 249 71.9
Cpa.g.sc12.111 Carica papaya HOM05D006682 ORTHO05D008627 1.8e-89 333.2 258 69.8
THA.LOC104807019 Tarenaya hassleriana HOM05D006682 ORTHO05D008627 8.9e-89 330.9 221 74.2
BcaB01g00476 Brassica carinata HOM05D006682 ORTHO05D008627 1.5e-88 330.1 250 68.8
BolC8t50319H Brassica oleracea HOM05D006682 ORTHO05D008627 1.5e-88 330.1 250 68.8
Duzib128G1702 Durio zibethinus HOM05D006682 ORTHO05D008627 1.5e-88 330.1 256 69.9
C08p27040 Brassica napus HOM05D006682 ORTHO05D008627 2.0e-88 329.7 250 68.8
A09p44960 Brassica napus HOM05D006682 ORTHO05D008627 2.6e-88 329.3 247 68.4
BraA09t39955Z Brassica rapa HOM05D006682 ORTHO05D008627 2.6e-88 329.3 247 68.4
CANSAT80G0450 Cannabis sativa HOM05D006682 ORTHO05D008627 5.8e-88 328.2 256 68.8
ClCG03G013350 Citrullus lanatus HOM05D006682 ORTHO05D008627 5.8e-88 328.2 255 70.2
Sed0028089 Sechium edule HOM05D006682 ORTHO05D008627 7.6e-88 327.8 251 70.1
TAR623G0396 Trochodendron aralioides HOM05D006682 ORTHO05D008627 2.2e-87 326.2 256 71.5
BcaB01g00416 Brassica carinata HOM05D006682 ORTHO05D008627 3.7e-87 325.5 247 68.4
Sp5g10480 Schrenkiella parvula HOM05D006682 ORTHO05D008627 6.4e-87 324.7 250 66.4
TWI38G0692 Tripterygium wilfordii HOM05D006682 ORTHO05D008627 6.4e-87 324.7 266 68.8
TAR623G0191 Trochodendron aralioides HOM05D006682 ORTHO05D008627 3.2e-86 322.4 256 70.3
CARHR161420 Cardamine hirsuta HOM05D006682 ORTHO05D008627 7.1e-86 321.2 252 67.1
Lj1A355T5 Lonicera japonica HOM05D006682 ORTHO05D008627 7.1e-86 321.2 260 67.3
Lalb_Chr08g0245621 Lupinus albus HOM05D006682 ORTHO05D008627 1.6e-85 320.1 245 68.2
Aa31sc655G20 Aethionema arabicum HOM05D006682 ORTHO05D008627 3.5e-85 318.9 194 79.9
AL5G32250 Arabidopsis lyrata HOM05D006682 ORTHO05D008627 1.0e-84 317.4 251 66.1
Thhalv10010653m.g Eutrema salsugineum HOM05D006682 ORTHO05D008627 1.0e-84 317.4 253 66.0
CsaV3_1G042700 Cucumis sativus L. HOM05D006682 ORTHO05D008627 3.0e-84 315.8 258 69.0
Glyma.12G056800 Glycine max HOM05D006682 ORTHO05D008627 3.0e-84 315.8 243 69.1
Lj3g0017048 Lotus japonicus HOM05D006682 ORTHO05D008627 3.9e-84 315.5 244 68.4
CSS0008647 Camellia sinensis var. sinensis HOM05D006682 ORTHO05D008627 5.1e-84 315.1 248 67.3
AT3G51790 Arabidopsis thaliana HOM05D006682 ORTHO05D008627 6.6e-84 314.7 248 66.9
Sabra03G0151700 Salix brachista HOM05D006682 ORTHO05D008627 8.6e-84 314.3 256 66.8
MELO3C015204.2 Cucumis melo HOM05D006682 ORTHO05D008627 1.1e-83 313.9 258 66.7
Rhsim13G0223700 Rhododendron simsii HOM05D006682 ORTHO05D008627 1.9e-83 313.2 253 69.2
Actinidia16314 Actinidia chinensis HOM05D006682 ORTHO05D008627 3.3e-83 312.4 259 66.8
Potri.003G205200 Populus trichocarpa HOM05D006682 ORTHO05D008627 3.3e-83 312.4 205 75.6
arahy.Tifrunner.gnm1.ann1.1N3H6Z Arachis hypogaea HOM05D006682 ORTHO05D008627 5.6e-83 311.6 262 65.3
Nn3g18894 Nelumbo nucifera HOM05D006682 ORTHO05D008627 7.3e-83 311.2 192 79.7
Phvul.011G058400 Phaseolus vulgaris HOM05D006682 ORTHO05D008627 9.6e-83 310.8 261 63.2
Glyma.11G132200 Glycine max HOM05D006682 ORTHO05D008627 1.2e-82 310.5 261 64.8
Lsat_1_v5_gn_8_74980 Lactuca sativa HOM05D006682 ORTHO05D008627 1.2e-82 310.5 269 64.3
VMungo1127G1130 Vigna mungo HOM05D006682 ORTHO05D008627 8.1e-82 307.8 257 65.0
arahy.Tifrunner.gnm1.ann1.11YZMF Arachis hypogaea HOM05D006682 ORTHO05D008627 1.4e-81 307.0 262 65.6
Ca_20573_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 2.4e-81 306.2 248 66.9
Ca_30508_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 2.4e-81 306.2 248 66.9
Psat7g213040 Pisum sativum HOM05D006682 ORTHO05D008627 3.1e-81 305.8 253 64.8
Hma1.2p1_0401F.1_g144700 Hydrangea macrophylla HOM05D006682 ORTHO05D008627 4.0e-81 305.4 190 82.1
Medtr4g065610 Medicago truncatula HOM05D006682 ORTHO05D008627 4.0e-81 305.4 260 65.0
Sc16g0009700 Simmondsia chinensis HOM05D006682 ORTHO05D008627 8.9e-81 304.3 191 80.6
Ciclev10012386m.g Citrus clementina HOM05D006682 ORTHO05D008627 2.0e-80 303.1 246 67.1
ECA233G5908 Erigeron canadensis HOM05D006682 ORTHO05D008627 9.9e-80 300.8 255 61.6
MSTRG.18416 Avicennia marina HOM05D006682 ORTHO05D008627 2.2e-79 299.7 254 65.4
MBI13_g31544_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 2.9e-79 299.3 237 68.4
EL10Ac3g05849 Beta vulgaris HOM05D006682 ORTHO05D008627 8.4e-79 297.7 245 66.9
CDE04G1557 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 1.9e-78 296.6 221 65.6
CDE03G0115 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 3.2e-78 295.8 202 69.3
Cc00_g20370 Coffea canephora HOM05D006682 ORTHO05D008627 2.1e-77 293.1 231 70.1
SalBow8G0417 Salvia bowleyana HOM05D006682 ORTHO05D008627 5.6e-75 285.0 261 62.5
SHI11277 Sapria himalayana HOM05D006682 ORTHO05D008627 5.6e-75 285.0 269 60.6
Manes.14G001136 Manihot esculenta HOM05D006682 ORTHO05D008627 7.3e-75 284.6 248 63.3
Ah.13g066750 Amaranthus hybridus HOM05D006682 ORTHO05D008627 9.6e-75 284.3 216 69.4
Aqoxy2G00055 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 2.1e-74 283.1 223 68.6
Solyc09g005870.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 4.0e-73 278.9 223 68.2
Migut.O00578 Erythranthe guttata HOM05D006682 ORTHO05D008627 9.0e-73 277.7 258 60.9
Sopen09g001750 Solanum pennellii HOM05D006682 ORTHO05D008627 9.0e-73 277.7 223 68.2
SalBow5G1085 Salvia bowleyana HOM05D006682 ORTHO05D008627 1.2e-72 277.3 269 60.2
CAN.G350.11 Capsicum annuum HOM05D006682 ORTHO05D008627 2.0e-72 276.6 223 68.6
Sopen03g006750 Solanum pennellii HOM05D006682 ORTHO05D008627 2.0e-72 276.6 270 60.0
Solyc03g033990.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 2.6e-72 276.2 270 60.0
Nitab4.5_0002026g0020 Nicotiana tabacum HOM05D006682 ORTHO05D008627 3.4e-72 275.8 269 61.3
PGSC0003DMG400023913 Solanum tuberosum HOM05D006682 ORTHO05D008627 4.4e-72 275.4 238 65.1
SGA_v2.0_scaffold42G16114 Striga asiatica HOM05D006682 ORTHO05D008627 4.4e-72 275.4 200 71.0
Os10g0545800 Oryza sativa ssp. japonica HOM05D006682 ORTHO05D008627 9.9e-72 274.2 186 71.5
PGSC0003DMG400009816 Solanum tuberosum HOM05D006682 ORTHO05D008627 2.2e-71 273.1 275 58.9
ATR0605G320 Amborella trichopoda HOM05D006682 ORTHO05D008627 1.4e-70 270.4 249 61.0
DCAR_014742 Daucus carota HOM05D006682 ORTHO05D008627 4.2e-70 268.9 164 79.9
TPR.G35025 Trifolium pratense HOM05D006682 ORTHO05D008627 3.5e-69 265.8 268 56.0
Zm00001eb022720 Zea mays HOM05D006682 ORTHO05D008627 1.7e-68 263.5 239 61.5
HPP92_017841 Vanilla planifolia HOM05D006682 ORTHO05D008627 5.1e-68 261.9 197 70.6
Zm00001eb394030 Zea mays HOM05D006682 ORTHO05D008627 1.1e-67 260.8 203 67.0
AUR62015492 Chenopodium quinoa HOM05D006682 ORTHO05D008627 1.9e-67 260.0 228 64.0
SGA_v2.0_scaffold4G02325 Striga asiatica HOM05D006682 ORTHO05D008627 5.6e-67 258.5 270 57.8
Lj3P268T21 Lonicera japonica HOM05D006682 ORTHO05D008627 4.0e-65 252.3 149 85.9
PSO384G2735 Papaver somniferum HOM05D006682 ORTHO05D008627 9.0e-65 251.1 247 56.3
PSO339G5979 Papaver somniferum HOM05D006682 ORTHO05D008627 1.2e-64 250.8 187 65.8
SEGI_12993 Sequoiadendron giganteum HOM05D006682 ORTHO05D008627 1.9e-62 243.4 186 65.1
Psat7g244600 Pisum sativum HOM05D006682 ORTHO05D008627 4.6e-61 238.8 211 60.7
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 4.8e-58 228.8 140 81.4
unitig_26.g10134 Utricularia gibba HOM05D006682 ORTHO05D008627 1.4e-57 227.3 256 55.9
Mapoly0003s0021 Marchantia polymorpha HOM05D006682 ORTHO05D008627 4.9e-55 218.8 174 63.2
Pp3c14_20080 Physcomitrium patens HOM05D006682 ORTHO05D008627 7.1e-54 214.9 189 57.7
HanXRQChr17g0534121 Helianthus annuus HOM05D006682 ORTHO05D008627 5.0e-47 192.2 179 59.8
Nitab4.5_0000492g0110 Nicotiana tabacum HOM05D006682 ORTHO05D008627 9.1e-33 144.8 109 68.8
Carub.0005s1814 Capsella rubella HOM05D006682 ORTHO05D008627 6.7e-28 128.6 129 55.8
GSVIVG01025303001 Vitis vinifera HOM05D006682 ORTHO05D008627 8.2e-26 121.7 100 65.0
EL10Ac6g14324 Beta vulgaris HOM05D006682 ORTHO05D007363 3.6e-21 106.3 71 70.4
CBR_g49935 Chara braunii HOM05D000019 ORTHO05D000048 5.7e-19 99.0 133 45.1
MBI13_g31542_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 1.8e-17 94.0 71 62.0
CBR_g49937 Chara braunii HOM05D000019 ORTHO05D000002 4.5e-16 89.4 101 40.6
Peaxi162Scf00029g00296 Petunia axillaris HOM05D006682 ORTHO05D008627 2.6e-11 73.6 50 74.0
Aqoxy4G00577 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 1.0e-07 61.6 45 64.4
Actinidia06890 Actinidia chinensis HOM05D006682 ORTHO05D054450 1.3e-07 61.2 59 55.9
MBI13_g31543_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 8.5e-07 58.5 111 38.7


User provided reference genes

Program Settings