Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 0.0e+00 1397.5 699 100.0
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 0.0e+00 1164.8 699 83.4
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 2.4e-311 1071.6 686 77.3
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 7.5e-308 1060.1 683 76.6
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.2e-302 1042.7 686 75.5
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 3.9e-296 1021.1 735 71.2
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 2.7e-273 945.3 705 66.8
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.8e-272 942.6 691 70.6
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 6.2e-270 934.1 707 66.5
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 2.4e-269 932.2 692 66.8
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 2.9e-267 925.2 707 66.1
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 3.9e-264 914.8 687 65.2
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 1.5e-263 912.9 702 66.0
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 6.9e-253 877.5 703 62.7
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 2.6e-252 875.5 657 65.8
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 4.5e-252 874.8 687 62.7
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 7.9e-249 864.0 690 62.6
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 1.0e-248 863.6 693 62.8
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 6.7e-248 860.9 690 62.8
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 8.8e-248 860.5 692 61.8
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 1.5e-247 859.8 700 60.9
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 7.4e-247 857.4 689 62.1
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 3.7e-246 855.1 693 62.8
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 1.4e-245 853.2 684 61.5
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 2.6e-244 849.0 705 61.7
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 4.5e-244 848.2 687 61.3
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 5.0e-243 844.7 692 60.8
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 2.5e-242 842.4 697 61.4
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 5.5e-242 841.3 706 61.0
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 1.4e-240 836.6 697 62.1
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 2.3e-240 835.9 706 61.3
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 3.9e-240 835.1 853 53.9
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 7.4e-239 830.9 696 59.9
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 2.2e-235 819.3 638 62.4
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 8.5e-235 817.4 702 60.0
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 1.5e-231 806.6 702 58.1
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 6.5e-227 791.2 693 57.1
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 9.4e-226 787.3 702 56.4
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 1.4e-224 783.5 701 56.2
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 1.4e-224 783.5 680 59.4
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.8e-224 783.1 692 59.1
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 4.4e-223 778.5 692 56.5
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 3.7e-222 775.4 697 57.2
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 4.8e-222 775.0 700 56.3
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 3.1e-221 772.3 695 56.5
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 9.1e-221 770.8 716 55.2
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 9.1e-221 770.8 702 57.3
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 9.1e-221 770.8 702 55.0
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 4.5e-220 768.5 696 54.9
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 7.7e-220 767.7 709 55.7
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 1.0e-219 767.3 714 56.2
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 1.7e-219 766.5 696 55.0
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 1.7e-219 766.5 724 55.8
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 2.3e-219 766.1 702 55.6
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 8.6e-219 764.2 707 56.0
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 1.1e-218 763.8 706 56.7
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 1.9e-218 763.1 704 55.4
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 5.5e-218 761.5 717 54.7
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.6e-217 760.0 693 57.9
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 3.6e-217 758.8 693 56.3
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 4.0e-216 755.4 715 55.2
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 5.2e-216 755.0 708 55.6
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 1.2e-212 743.8 710 55.1
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 1.0e-211 740.7 768 50.9
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 5.0e-211 738.4 740 53.1
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 2.5e-210 736.1 707 54.6
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 3.3e-210 735.7 734 53.7
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 2.8e-209 732.6 701 55.2
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 1.2e-207 727.2 700 55.3
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 2.6e-207 726.1 695 53.5
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 2.9e-206 722.6 715 54.4
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 1.6e-204 716.8 652 55.8
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 6.0e-204 714.9 715 53.7
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 2.3e-203 713.0 698 53.7
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 2.3e-200 703.0 699 52.2
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 8.9e-192 674.5 715 50.9
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 3.5e-188 662.5 690 50.3
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 1.0e-187 661.0 704 52.7
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 7.3e-186 654.8 598 55.9
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 4.0e-184 649.0 644 53.6
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 7.6e-183 644.8 759 48.4
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 6.6e-179 631.7 711 48.1
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 4.7e-177 625.5 741 46.2
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 9.0e-176 621.3 688 47.1
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 2.7e-156 556.6 430 63.7
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 3.0e-155 553.1 587 51.3
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 1.4e-152 544.3 685 44.8
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 2.6e-151 540.0 457 59.5
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 5.1e-147 525.8 560 50.0
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 2.2e-145 520.4 452 57.5
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 1.4e-144 517.7 376 66.2
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 3.8e-142 509.6 654 44.0
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 1.9e-141 507.3 685 41.2
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 2.3e-139 500.4 474 56.1
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 3.4e-135 486.5 317 77.6
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 2.2e-126 457.2 329 67.8
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 8.0e-124 448.7 657 40.8
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 9.4e-109 398.7 587 38.8
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 1.7e-105 387.9 540 39.8
CARHR019320 Cardamine hirsuta HOM05D004701 ORTHO05D005220 6.8e-99 365.9 256 65.6
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.2e-83 313.2 350 45.1
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 2.9e-81 307.4 272 58.8
MD14G1203400 Malus domestica HOM05D004701 ORTHO05D005220 4.0e-75 287.0 197 74.1
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 9.5e-69 265.8 274 52.6
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 2.7e-63 247.7 293 48.5
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 2.5e-61 241.1 224 51.8
Oeu052445.1 Olea europaea HOM05D004701 ORTHO05D005220 7.3e-61 239.6 255 47.1
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 3.6e-60 237.3 261 46.4
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.7e-54 218.4 207 56.0
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 8.7e-54 216.1 512 31.6
SMO286G0020 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.3e-52 212.2 320 38.1
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 9.6e-45 186.0 231 43.7
Cc00_g08360 Coffea canephora HOM05D004701 ORTHO05D005220 1.4e-40 172.2 159 52.2
SMO274G0026 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.1e-39 168.3 305 35.1
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 7.4e-37 159.8 160 56.2
SMO240G0047 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.6e-36 158.7 332 32.2
SMO274G0023 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.8e-36 157.1 332 32.5
SEGI_05265 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 2.4e-35 154.8 168 47.6
Cpa.g.c36787.2 Carica papaya HOM05D004701 ORTHO05D005220 3.2e-32 144.4 88 73.9
SEGI_06018 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 4.2e-32 144.1 143 46.9
SMO202G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.1e-31 141.7 188 42.6
SMO364G0054 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.1e-31 141.7 196 38.3
SMO122G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.3e-30 138.3 220 38.2
SMO183G0003 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 9.7e-29 132.9 332 33.7
MD14G1203300 Malus domestica HOM05D004701 ORTHO05D005220 1.1e-27 129.4 116 62.1
PRCOL_00003726 Prasinoderma coloniale HOM05D004701 ORTHO05D005220 1.1e-24 119.4 436 24.5
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 2.5e-24 118.2 131 48.9
Cre02.g118450 Chlamydomonas reinhardtii HOM05D004701 ORTHO05D005220 7.2e-24 116.7 473 23.7
SMO274G0001 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 9.4e-24 116.3 158 44.3
AagrBONN_evm.TU.Sc2ySwM_344.2753 Anthoceros agrestis HOM05D004701 ORTHO05D005220 1.6e-23 115.5 402 27.9
SMO274G0004 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.6e-23 114.4 272 31.2
SMO077G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.0e-22 112.8 220 32.3
SMO077G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.5e-21 108.2 286 32.5
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 9.7e-21 106.3 151 43.0
MD14G1127800 Malus domestica HOM05D004701 ORTHO05D005220 1.1e-19 102.8 74 66.2
SMO212G0008 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.3e-19 100.5 136 41.2
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.2e-16 91.3 74 59.5
AagrBONN_evm.TU.Sc2ySwM_344.2754 Anthoceros agrestis HOM05D004701 ORTHO05D005220 1.6e-15 89.0 209 30.6
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.6e-15 89.0 74 59.5
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.6e-15 89.0 74 59.5
Cpa.g.sc3599.1 Carica papaya HOM05D004701 ORTHO05D005220 1.6e-15 89.0 64 68.8
Lsat_1_v5_gn_3_76880 Lactuca sativa HOM05D005083 ORTHO05D006310 2.7e-15 88.2 94 52.1
Oeu052444.1 Olea europaea HOM05D004701 ORTHO05D005220 2.0e-13 82.0 62 59.7
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 2.6e-13 81.6 138 42.8
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.3e-13 81.3 81 56.8
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 4.4e-13 80.9 133 42.1
SMO032G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.7e-13 80.5 175 34.3
Ah.11g048280 Amaranthus hybridus HOM05D004701 ORTHO05D005220 2.2e-12 78.6 86 44.2
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 8.2e-12 76.6 79 54.4
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 3.1e-11 74.7 84 46.4
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 4.1e-11 74.3 73 52.1
SMO286G0021 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.6e-10 71.6 171 29.8
Haze_06050 Corylus avellana HOM05D022078 ORTHO05D024871 2.2e-09 68.6 57 61.4
MELO3C028766.2 Cucumis melo HOM05D001162 ORTHO05D022475 1.9e-08 65.5 45 57.8
CSS0027371 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.2e-07 62.8 45 62.2
CSS0018594 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.1e-07 62.0 42 64.3
MBI05_g10671_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 6.1e-07 60.5 37 70.3
SMO009G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.8e-06 58.9 163 29.4
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 5.2e-06 57.4 47 57.4


User provided reference genes

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