Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G128800 Prunus persica HOM05D007016 ORTHO05D008847 1.3e-140 503.1 249 100.0
MD14G1125100 Malus domestica HOM05D007016 ORTHO05D008847 1.7e-97 359.8 254 74.8
MD06G1117700 Malus domestica HOM05D007016 ORTHO05D008847 1.9e-88 329.7 224 76.8
FAN08G2008 Fragaria x ananassa HOM05D007016 ORTHO05D008847 4.1e-83 312.0 259 68.3
FvH4_5g11000 Fragaria vesca HOM05D007016 ORTHO05D008847 3.0e-81 305.8 258 67.8
FAN04G1313 Fragaria x ananassa HOM05D007016 ORTHO05D008847 3.9e-81 305.4 261 67.4
Haze_14080 Corylus avellana HOM05D007016 ORTHO05D008847 6.2e-79 298.1 238 67.2
Cfa011932 Carpinus fangiana HOM05D007016 ORTHO05D008847 1.4e-78 297.0 234 67.5
RcHm_v2.0_Chr7g0186811 Rosa chinensis HOM05D007016 ORTHO05D008847 3.1e-78 295.8 259 65.6
FAN18G1330 Fragaria x ananassa HOM05D007016 ORTHO05D008847 1.4e-75 287.0 296 59.1
Dinv12013 Davidia involucrata HOM05D007016 ORTHO05D008847 1.2e-74 283.9 239 63.6
TWI15G0571 Tripterygium wilfordii HOM05D007016 ORTHO05D008847 1.2e-74 283.9 251 61.4
Dinv34693 Davidia involucrata HOM05D007016 ORTHO05D008847 6.0e-74 281.6 239 63.2
Thecc.03G221900 Theobroma cacao HOM05D007016 ORTHO05D008847 3.0e-73 279.3 240 62.1
Duzib205G1809 Durio zibethinus HOM05D007016 ORTHO05D008847 6.6e-73 278.1 247 62.3
Actinidia22202 Actinidia chinensis HOM05D007016 ORTHO05D008847 8.7e-73 277.7 237 62.0
CiPaw.12G078100 Carya illinoinensis HOM05D007016 ORTHO05D008847 2.5e-72 276.2 248 62.9
Duzib084G0025 Durio zibethinus HOM05D000458 ORTHO05D000951 2.5e-72 276.2 230 63.9
QL02p028324 Quercus lobata HOM05D007016 ORTHO05D008847 2.8e-71 272.7 217 65.4
TWI81G0911 Tripterygium wilfordii HOM05D007016 ORTHO05D008847 3.1e-70 269.2 252 60.7
Rhsim02G0251600 Rhododendron simsii HOM05D007016 ORTHO05D008847 4.0e-70 268.9 232 63.4
GSVIVG01019642001 Vitis vinifera HOM05D007016 ORTHO05D008847 4.0e-70 268.9 233 60.5
Eucgr.D01686 Eucalyptus grandis HOM05D007016 ORTHO05D008847 5.2e-70 268.5 235 65.1
FAN13G1076 Fragaria x ananassa HOM05D007016 ORTHO05D008847 1.2e-69 267.3 258 62.8
Glyma.01G230300 Glycine max HOM05D007016 ORTHO05D008847 5.8e-69 265.0 206 67.0
Ciclev10021806m.g Citrus clementina HOM05D007016 ORTHO05D008847 9.9e-69 264.2 249 57.4
vmacro11507 Vaccinium macrocarpon HOM05D007016 ORTHO05D008847 9.9e-69 264.2 250 58.8
Gorai.003G076500 Gossypium raimondii HOM05D007016 ORTHO05D008847 2.2e-68 263.1 218 64.2
PGR031G1249 Punica granatum HOM05D007016 ORTHO05D008847 9.3e-67 257.7 238 61.8
VMungo1215G3083 Vigna mungo HOM05D007016 ORTHO05D008847 1.6e-66 256.9 239 59.8
Haze_09164 Corylus avellana HOM05D007016 ORTHO05D008847 2.7e-66 256.1 248 59.7
COL.COLO4_10789 Corchorus olitorius HOM05D000458 ORTHO05D000951 1.7e-65 253.4 217 63.1
Phvul.002G036800 Phaseolus vulgaris HOM05D007016 ORTHO05D008847 3.0e-65 252.7 239 58.6
arahy.Tifrunner.gnm1.ann1.CXQL6Y Arachis hypogaea HOM05D007016 ORTHO05D008847 1.1e-64 250.8 223 61.0
Manes.02G003500 Manihot esculenta HOM05D007016 ORTHO05D008847 1.1e-64 250.8 238 60.1
Haze_09158 Corylus avellana HOM05D007016 ORTHO05D008847 3.3e-64 249.2 248 60.1
arahy.Tifrunner.gnm1.ann1.6JL1AX Arachis hypogaea HOM05D007016 ORTHO05D008847 4.3e-64 248.8 223 61.4
TAR375G0929 Trochodendron aralioides HOM05D007016 ORTHO05D008847 2.8e-63 246.1 252 56.3
Potri.003G146100 Populus trichocarpa HOM05D007016 ORTHO05D008847 8.1e-63 244.6 255 52.9
CsaV3_5G001730 Cucumis sativus L. HOM05D007016 ORTHO05D008847 1.8e-62 243.4 253 53.8
Oeu022037.1 Olea europaea HOM05D007016 ORTHO05D008847 1.5e-61 240.4 233 56.7
Nitab4.5_0004251g0050 Nicotiana tabacum HOM05D007016 ORTHO05D008847 3.4e-61 239.2 254 55.1
ClCG01G001570 Citrullus lanatus HOM05D007016 ORTHO05D008847 7.6e-61 238.0 242 55.0
Sabra03G0106200 Salix brachista HOM05D007016 ORTHO05D008847 9.9e-61 237.7 255 53.3
Sed0027229 Sechium edule HOM05D007016 ORTHO05D008847 1.7e-60 236.9 243 53.5
Ca_24467_v3 Cicer arietinum L. HOM05D007016 ORTHO05D008847 3.8e-60 235.7 208 63.9
Cc08_g16690 Coffea canephora HOM05D007016 ORTHO05D008847 1.9e-59 233.4 252 54.4
LjContig00222g0018079 Lotus japonicus HOM05D007016 ORTHO05D008847 3.2e-59 232.6 245 53.9
MBI04_g33411_MAGBIO Magnolia biondii HOM05D007016 ORTHO05D008847 1.6e-58 230.3 248 51.6
Medtr5g008220 Medicago truncatula HOM05D007016 ORTHO05D008847 3.5e-58 229.2 240 55.4
AUR62007045 Chenopodium quinoa HOM05D007016 ORTHO05D008847 7.9e-58 228.0 252 53.2
Peaxi162Scf00074g00350 Petunia axillaris HOM05D000458 ORTHO05D000951 2.3e-57 226.5 252 51.6
Gohir.A02G097900 Gossypium hirsutum HOM05D007016 ORTHO05D008847 5.1e-57 225.3 251 53.4
Sc01g0010620 Simmondsia chinensis HOM05D007016 ORTHO05D008847 8.7e-57 224.6 251 52.6
Gohir.D03G085700 Gossypium hirsutum HOM05D007016 ORTHO05D008847 1.5e-56 223.8 218 57.3
Aqoxy5G04260 Aquilegia oxysepala HOM05D007016 ORTHO05D008847 6.2e-55 218.4 219 56.2
Potri.001G084600 Populus trichocarpa HOM05D007016 ORTHO05D008847 6.2e-55 218.4 211 57.8
Nn3g18888 Nelumbo nucifera HOM05D007016 ORTHO05D008847 1.8e-54 216.9 293 45.7
EL10Ac5g12439 Beta vulgaris HOM05D007016 ORTHO05D008847 5.3e-54 215.3 248 50.4
MELO3C005780.2 Cucumis melo HOM05D007016 ORTHO05D008847 5.3e-54 215.3 246 50.0
Nitab4.5_0007063g0030 Nicotiana tabacum HOM05D007016 ORTHO05D008847 5.3e-54 215.3 295 47.5
Migut.O00796 Erythranthe guttata HOM05D007016 ORTHO05D008847 6.9e-54 214.9 241 52.7
HanXRQChr06g0166831 Helianthus annuus HOM05D007016 ORTHO05D008847 1.5e-53 213.8 210 53.8
SGA_v2.0_scaffold314G48366 Striga asiatica HOM05D007016 ORTHO05D008847 2.0e-53 213.4 232 53.9
Atru.chr9.1899 Acer truncatum HOM05D007016 ORTHO05D008847 3.4e-53 212.6 210 57.1
DCAR_006538 Daucus carota HOM05D007016 ORTHO05D008847 4.5e-53 212.2 203 57.6
Ah.07g197890 Amaranthus hybridus HOM05D007016 ORTHO05D008847 7.6e-53 211.5 206 56.3
ATR0620G109 Amborella trichopoda HOM05D007016 ORTHO05D008847 9.9e-53 211.1 170 61.8
PGSC0003DMG400012122 Solanum tuberosum HOM05D007016 ORTHO05D008847 1.7e-52 210.3 244 51.6
Cpa.g.sc175.19 Carica papaya HOM05D007016 ORTHO05D008847 1.1e-51 207.6 186 62.4
Lsat_1_v5_gn_3_13941 Lactuca sativa HOM05D007016 ORTHO05D008847 1.1e-51 207.6 235 50.6
Solyc08g083030.4 Solanum lycopersicum HOM05D007016 ORTHO05D008847 3.2e-51 206.1 235 51.9
PSO339G4063 Papaver somniferum HOM05D007016 ORTHO05D008847 4.2e-51 205.7 259 48.6
PSO339G2192 Papaver somniferum HOM05D007016 ORTHO05D008847 7.1e-51 204.9 259 48.6
ECA246G5308 Erigeron canadensis HOM05D007016 ORTHO05D008847 2.7e-50 203.0 215 50.7
Sopen08g031240 Solanum pennellii HOM05D007016 ORTHO05D008847 2.7e-50 203.0 244 50.8
MD16G1274000 Malus domestica HOM05D007016 ORTHO05D008847 6.0e-50 201.8 168 64.9
HPP92_022341 Vanilla planifolia HOM05D007016 ORTHO05D008847 3.9e-49 199.1 164 62.2
HPP92_022355 Vanilla planifolia HOM05D007016 ORTHO05D008847 3.9e-49 199.1 164 62.2
BraA07t29790Z Brassica rapa HOM05D003273 ORTHO05D004023 3.7e-47 192.6 179 59.2
TPR.G38026 Trifolium pratense HOM05D007016 ORTHO05D008847 6.2e-47 191.8 181 55.8
Sp7g00170 Schrenkiella parvula HOM05D007016 ORTHO05D008847 1.1e-46 191.0 148 66.2
Lalb_Chr09g0320381 Lupinus albus HOM05D007016 ORTHO05D008847 1.4e-46 190.7 248 45.2
A07p21030 Brassica napus HOM05D003273 ORTHO05D004023 1.8e-46 190.3 178 59.0
CAN.G567.80 Capsicum annuum HOM05D007016 ORTHO05D008847 2.4e-46 189.9 195 54.9
Thhalv10027936m.g Eutrema salsugineum HOM05D007016 ORTHO05D008847 3.1e-46 189.5 144 66.0
THA.LOC104809306 Tarenaya hassleriana HOM05D007016 ORTHO05D008847 4.0e-46 189.1 164 58.5
Zm00001eb428160 Zea mays HOM05D007016 ORTHO05D008847 9.0e-46 188.0 182 53.3
AT5G41960 Arabidopsis thaliana HOM05D007016 ORTHO05D008847 1.5e-45 187.2 147 65.3
MSTRG.15575 Avicennia marina HOM05D007016 ORTHO05D008847 2.0e-45 186.8 244 47.1
BcaB06g27684 Brassica carinata HOM05D003273 ORTHO05D004023 2.0e-45 186.8 180 57.2
BcaC02g08900 Brassica carinata HOM05D003273 ORTHO05D004023 2.6e-45 186.4 151 63.6
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 4.5e-45 185.7 181 55.8
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 5.8e-45 185.3 181 55.8
Lsat_1_v5_gn_3_14061 Lactuca sativa HOM05D007016 ORTHO05D008847 1.7e-44 183.7 230 47.0
C06p20380 Brassica napus HOM05D003273 ORTHO05D004023 2.9e-44 183.0 148 65.5
CARHR212600 Cardamine hirsuta HOM05D007016 ORTHO05D008847 3.8e-44 182.6 147 63.9
Os04g0585600 Oryza sativa ssp. japonica HOM05D007016 ORTHO05D008847 4.9e-44 182.2 181 54.1
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 6.5e-44 181.8 172 58.1
BolC4t26521H Brassica oleracea HOM05D003273 ORTHO05D004023 6.5e-44 181.8 172 58.1
Carub.0007s3342 Capsella rubella HOM05D007016 ORTHO05D008847 6.5e-44 181.8 147 62.6
AL7G47260 Arabidopsis lyrata HOM05D007016 ORTHO05D008847 8.4e-44 181.4 188 55.9
BcaC08g44572 Brassica carinata HOM05D003273 ORTHO05D004023 1.1e-43 181.0 144 66.0
HanXRQChr17g0534751 Helianthus annuus HOM05D007016 ORTHO05D008847 1.9e-43 180.3 219 47.5
SEGI_36842 Sequoiadendron giganteum HOM05D007016 ORTHO05D008847 5.5e-43 178.7 166 54.8
AUR62019909 Chenopodium quinoa HOM05D007016 ORTHO05D008847 2.3e-41 173.3 250 46.4
Aa31LG9G230 Aethionema arabicum HOM05D007016 ORTHO05D008847 1.5e-40 170.6 224 48.2
unitig_62.g23644 Utricularia gibba HOM05D007016 ORTHO05D008847 5.7e-40 168.7 170 52.9
Pp3c14_22240 Physcomitrium patens HOM05D007016 ORTHO05D008847 1.5e-37 160.6 126 59.5
CSS0028177 Camellia sinensis var. sinensis HOM05D007016 ORTHO05D008847 6.1e-34 148.7 241 44.0
Mapoly0080s0071 Marchantia polymorpha HOM05D007016 ORTHO05D008847 1.4e-33 147.5 122 58.2
BolC6t37216H Brassica oleracea HOM05D007016 ORTHO05D008847 2.2e-31 140.2 150 54.7
SMO164G0130 Selaginella moellendorffii HOM05D007016 ORTHO05D008847 2.8e-31 139.8 114 55.3
Nitab4.5_0000051g0070 Nicotiana tabacum HOM05D007016 ORTHO05D008847 4.8e-31 139.0 169 49.7
AagrBONN_evm.TU.Sc2ySwM_117.1459 Anthoceros agrestis HOM05D007016 ORTHO05D008847 1.1e-30 137.9 133 52.6
Psat2g187480 Pisum sativum HOM05D007016 ORTHO05D008847 1.2e-29 134.4 123 59.3
CDE07G1000 Ceratophyllum demersum HOM05D007016 ORTHO05D008847 2.2e-28 130.2 142 48.6
arahy.Tifrunner.gnm1.ann1.PIY4C5 Arachis hypogaea HOM05D007016 ORTHO05D008847 6.5e-28 128.6 86 73.3
CANSAT21G1603 Cannabis sativa HOM05D007016 ORTHO05D008847 7.2e-27 125.2 255 40.0
CBR_g26222 Chara braunii HOM05D007016 ORTHO05D008847 7.9e-26 121.7 137 46.7
arahy.Tifrunner.gnm1.ann1.HM96ZH Arachis hypogaea HOM05D007016 ORTHO05D008847 1.1e-22 111.3 118 52.5
SEGI_07436 Sequoiadendron giganteum HOM05D007016 ORTHO05D008847 7.0e-22 108.6 98 55.1
Hund14199 Selenicereus undatus HOM05D007016 ORTHO05D008847 3.4e-21 106.3 116 53.4
TPR.G22067 Trifolium pratense HOM05D007016 ORTHO05D008847 2.4e-06 57.0 76 47.4


User provided reference genes

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