Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G119400 Prunus persica HOM05D000354 ORTHO05D000181 1.1e-65 253.1 122 100.0
Prupe.5G119200 Prunus persica HOM05D000354 ORTHO05D000181 6.3e-61 237.3 121 93.4
MD06G1106500 Malus domestica HOM05D009669 ORTHO05D000181 5.4e-36 154.5 119 58.8
Prupe.5G118600 Prunus persica HOM05D000275 ORTHO05D000181 8.4e-21 104.0 113 46.0
FAN04G3100 Fragaria x ananassa HOM05D000354 ORTHO05D000181 1.1e-17 93.6 124 43.5
FAN18G3208 Fragaria x ananassa HOM05D000354 ORTHO05D000717 1.1e-17 93.6 124 43.5
FvH4_5g04531 Fragaria vesca HOM05D000354 ORTHO05D000181 1.9e-17 92.8 123 43.1
TAR636G0501 Trochodendron aralioides HOM05D000275 ORTHO05D000181 2.5e-17 92.4 112 42.0
FAN08G2372 Fragaria x ananassa HOM05D000354 ORTHO05D000717 9.6e-17 90.5 122 42.6
RcHm_v2.0_Chr7g0194911 Rosa chinensis HOM05D000354 ORTHO05D000181 6.2e-16 87.8 124 41.1
TAR374G1222 Trochodendron aralioides HOM05D000275 ORTHO05D000181 9.0e-15 84.0 110 37.3
Actinidia22157 Actinidia chinensis HOM05D000275 ORTHO05D000181 1.5e-14 83.2 113 35.4
CiPaw.02G040200 Carya illinoinensis HOM05D000275 ORTHO05D000181 3.4e-14 82.0 91 42.9
Haze_25363 Corylus avellana HOM05D033107 ORTHO05D000181 5.8e-14 81.3 123 37.4
Manes.02G010200 Manihot esculenta HOM05D000275 ORTHO05D000181 7.6e-14 80.9 120 32.5
Potri.014G098000 Populus trichocarpa HOM05D000275 ORTHO05D000181 1.7e-13 79.7 112 36.6
MD01G1079700 Malus domestica HOM05D000275 ORTHO05D000181 2.9e-13 79.0 96 37.5
Cfa011911 Carpinus fangiana HOM05D000275 ORTHO05D000181 6.4e-13 77.8 115 32.2
Haze_09187 Corylus avellana HOM05D000275 ORTHO05D000181 1.1e-12 77.0 88 37.5
MD06G1106400 Malus domestica HOM05D000275 ORTHO05D000181 1.4e-12 76.6 75 49.3
TWI59G0931 Tripterygium wilfordii HOM05D000275 ORTHO05D000181 1.9e-12 76.3 110 30.9
Eucgr.E00056 Eucalyptus grandis HOM05D009669 ORTHO05D000181 3.2e-12 75.5 97 43.3
Manes.01G246800 Manihot esculenta HOM05D000275 ORTHO05D000181 3.2e-12 75.5 111 32.4
CAN.G986.13 Capsicum annuum HOM05D000275 ORTHO05D000181 5.4e-12 74.7 100 37.0
Ah.05g179640 Amaranthus hybridus HOM05D000275 ORTHO05D000181 7.1e-12 74.3 113 36.3
Prupe.2G187100 Prunus persica HOM05D000275 ORTHO05D000181 7.1e-12 74.3 120 34.2
Lalb_Chr15g0076251 Lupinus albus HOM05D000275 ORTHO05D000181 9.3e-12 73.9 121 33.9
CANSAT56G2214 Cannabis sativa HOM05D000275 ORTHO05D000181 1.6e-11 73.2 112 31.2
CANSAT56G1709 Cannabis sativa HOM05D000275 ORTHO05D000181 2.1e-11 72.8 117 31.6
Aqoxy7G00106 Aquilegia oxysepala HOM05D000275 ORTHO05D000181 3.5e-11 72.0 110 30.9
Peaxi162Scf00786g00431 Petunia axillaris HOM05D000275 ORTHO05D000181 3.5e-11 72.0 99 36.4
ClCG05G000860 Citrullus lanatus HOM05D000275 ORTHO05D000181 4.6e-11 71.6 117 33.3
Ciclev10022783m.g Citrus clementina HOM05D009669 ORTHO05D000181 4.6e-11 71.6 98 35.7
FvH4_7g16320 Fragaria vesca HOM05D000275 ORTHO05D000181 4.6e-11 71.6 117 30.8
FAN06G2922 Fragaria x ananassa HOM05D000275 ORTHO05D000181 4.6e-11 71.6 117 30.8
FAN06G3596 Fragaria x ananassa HOM05D000275 ORTHO05D000181 4.6e-11 71.6 117 30.8
Nn1g09584 Nelumbo nucifera HOM05D000275 ORTHO05D000181 6.0e-11 71.2 113 31.9
VMungo0540G1752 Vigna mungo HOM05D000275 ORTHO05D000181 6.0e-11 71.2 117 32.5
Ah.12g052540 Amaranthus hybridus HOM05D002290 ORTHO05D002532 7.9e-11 70.9 95 34.7
Ah.05g179650 Amaranthus hybridus HOM05D000275 ORTHO05D000181 1.0e-10 70.5 95 34.7
AUR62023470 Chenopodium quinoa HOM05D000275 ORTHO05D000181 1.3e-10 70.1 94 35.1
Duzib268G0438 Durio zibethinus HOM05D000275 ORTHO05D000181 1.3e-10 70.1 123 30.1
FAN03G3319 Fragaria x ananassa HOM05D000275 ORTHO05D000181 1.3e-10 70.1 100 32.0
Hma1.2p1_0295F.1_g116640 Hydrangea macrophylla HOM05D000275 ORTHO05D000181 1.3e-10 70.1 118 36.4
Ciclev10022824m.g Citrus clementina HOM05D000275 ORTHO05D000181 1.8e-10 69.7 98 31.6
CsaV3_3G008100 Cucumis sativus L. HOM05D000275 ORTHO05D000181 1.8e-10 69.7 113 34.5
Nitab4.5_0004999g0110 Nicotiana tabacum HOM05D009669 ORTHO05D000181 1.8e-10 69.7 103 32.0
Phvul.010G069500 Phaseolus vulgaris HOM05D000275 ORTHO05D000181 1.8e-10 69.7 119 30.3
AUR62019837 Chenopodium quinoa HOM05D002290 ORTHO05D002532 2.3e-10 69.3 92 35.9
Atru.chr5.658 Acer truncatum HOM05D000275 ORTHO05D000181 3.0e-10 68.9 122 30.3
FAN06G0058 Fragaria x ananassa HOM05D000275 ORTHO05D000181 3.0e-10 68.9 92 37.0
RcHm_v2.0_Chr1g0359331 Rosa chinensis HOM05D000275 ORTHO05D000181 3.0e-10 68.9 117 32.5
FAN06G4638 Fragaria x ananassa HOM05D000275 ORTHO05D000181 3.9e-10 68.6 115 33.9
AUR62004483 Chenopodium quinoa HOM05D000275 ORTHO05D000181 5.1e-10 68.2 93 33.3
Ciclev10033516m.g Citrus clementina HOM05D000275 ORTHO05D000181 5.1e-10 68.2 112 34.8
Eucgr.A00745 Eucalyptus grandis HOM05D000275 ORTHO05D000181 5.1e-10 68.2 118 32.2
FAN01G1361 Fragaria x ananassa HOM05D009669 ORTHO05D000181 5.1e-10 68.2 117 31.6
Glyma.03G257200 Glycine max HOM05D000275 ORTHO05D000181 5.1e-10 68.2 115 30.4
Lalb_Chr21g0316631 Lupinus albus HOM05D000275 ORTHO05D000181 5.1e-10 68.2 118 29.7
MD07G1148600 Malus domestica HOM05D000275 ORTHO05D000181 5.1e-10 68.2 96 35.4
Atru.chr9.1983 Acer truncatum HOM05D000275 ORTHO05D000181 8.7e-10 67.4 102 40.2
Atru.chr9.1997 Acer truncatum HOM05D000275 ORTHO05D000181 8.7e-10 67.4 102 40.2
COL.COLO4_06294 Corchorus olitorius HOM05D002290 ORTHO05D002532 8.7e-10 67.4 110 29.1
FAN10G1205 Fragaria x ananassa HOM05D000275 ORTHO05D000181 1.1e-09 67.0 94 33.0
FAN10G2621 Fragaria x ananassa HOM05D000275 ORTHO05D000181 1.1e-09 67.0 94 33.0
Phvul.006G112211 Phaseolus vulgaris HOM05D000275 ORTHO05D000181 1.1e-09 67.0 115 28.7
Cpa.g.sc96.4 Carica papaya HOM05D002290 ORTHO05D002532 1.5e-09 66.6 111 31.5
Dinv32580 Davidia involucrata HOM05D009669 ORTHO05D000181 1.5e-09 66.6 114 33.3
Sc01g0002760 Simmondsia chinensis HOM05D000275 ORTHO05D000181 1.5e-09 66.6 94 35.1
Ah.05g179660 Amaranthus hybridus HOM05D000275 ORTHO05D000181 2.5e-09 65.9 117 26.5
Nitab4.5_0000838g0170 Nicotiana tabacum HOM05D009669 ORTHO05D000181 2.5e-09 65.9 102 30.4
FvH4_7g10020 Fragaria vesca HOM05D000275 ORTHO05D000181 3.3e-09 65.5 92 35.9
Gorai.002G020000 Gossypium raimondii HOM05D007676 ORTHO05D009456 3.3e-09 65.5 111 34.2
Sed0001629 Sechium edule HOM05D000275 ORTHO05D000181 3.3e-09 65.5 114 32.5
MSTRG.4810 Avicennia marina HOM05D009669 ORTHO05D000181 4.3e-09 65.1 112 31.2
Gohir.D01G017700 Gossypium hirsutum HOM05D007676 ORTHO05D009456 4.3e-09 65.1 111 34.2
PSO210G3257 Papaver somniferum HOM05D000275 ORTHO05D000181 4.3e-09 65.1 115 27.8
Peaxi162Scf00129g00232 Petunia axillaris HOM05D000275 ORTHO05D000181 4.3e-09 65.1 117 34.2
Sed0020486 Sechium edule HOM05D000275 ORTHO05D000181 4.3e-09 65.1 121 30.6
Gohir.A01G019100 Gossypium hirsutum HOM05D007676 ORTHO05D009456 5.6e-09 64.7 111 35.1
Sabra14G0071800 Salix brachista HOM05D009669 ORTHO05D000181 5.6e-09 64.7 112 31.2
TWI15G0613 Tripterygium wilfordii HOM05D000354 ORTHO05D000181 5.6e-09 64.7 122 29.5
Actinidia08273 Actinidia chinensis HOM05D000275 ORTHO05D000181 7.4e-09 64.3 115 33.0
Ciclev10024405m.g Citrus clementina HOM05D000275 ORTHO05D000181 7.4e-09 64.3 94 27.7
Gohir.A09G213654 Gossypium hirsutum HOM05D000275 ORTHO05D000181 1.3e-08 63.5 118 28.8
Os01g0219500 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D049927 1.6e-08 63.2 92 34.8
BcaB04g18572 Brassica carinata HOM05D000275 ORTHO05D000181 2.1e-08 62.8 92 32.6
Actinidia10131 Actinidia chinensis HOM05D000275 ORTHO05D000181 2.8e-08 62.4 103 34.0
SEGI_33977 Sequoiadendron giganteum HOM05D000275 ORTHO05D000181 2.8e-08 62.4 73 37.0
MSTRG.18946 Avicennia marina HOM05D000275 ORTHO05D000181 3.7e-08 62.0 118 28.0
Nn4g24938 Nelumbo nucifera HOM05D000275 ORTHO05D000181 3.7e-08 62.0 96 35.4
PGSC0003DMG400001322 Solanum tuberosum HOM05D000275 ORTHO05D000181 3.7e-08 62.0 82 41.5
TWI53G1340 Tripterygium wilfordii HOM05D000275 ORTHO05D000181 3.7e-08 62.0 120 31.7
DCAR_020877 Daucus carota HOM05D000275 ORTHO05D000181 4.8e-08 61.6 115 33.9
FAN03G2574 Fragaria x ananassa HOM05D000275 ORTHO05D000181 4.8e-08 61.6 92 34.8
Hma1.2p1_0295F.1_g116650 Hydrangea macrophylla HOM05D000275 ORTHO05D000181 6.2e-08 61.2 114 31.6
Sed0025062 Sechium edule HOM05D000275 ORTHO05D000181 6.2e-08 61.2 121 30.6
GSVIVG01027088001 Vitis vinifera HOM05D009669 ORTHO05D000181 6.2e-08 61.2 113 30.1
BcaC01g04195 Brassica carinata HOM05D000275 ORTHO05D000181 1.4e-07 60.1 92 31.5
BolC3t16669H Brassica oleracea HOM05D000275 ORTHO05D000181 1.4e-07 60.1 92 31.5
Rhsim02G0242900 Rhododendron simsii HOM05D000324 ORTHO05D001014 1.4e-07 60.1 105 29.5
C03p43980 Brassica napus HOM05D000275 ORTHO05D000181 3.1e-07 58.9 90 31.1
HanXRQChr01g0000141 Helianthus annuus HOM05D000275 ORTHO05D000181 9.0e-07 57.4 92 35.9
HanXRQChr01g0000161 Helianthus annuus HOM05D000275 ORTHO05D000181 9.0e-07 57.4 117 32.5
PGSC0003DMG400031127 Solanum tuberosum HOM05D000275 ORTHO05D000181 9.0e-07 57.4 117 28.2
Atru.chr1.2501 Acer truncatum HOM05D000275 ORTHO05D003378 1.5e-06 56.6 111 29.7
Aa31LG7G7240 Aethionema arabicum HOM05D007676 ORTHO05D009456 1.5e-06 56.6 123 28.5
Eucgr.D01379 Eucalyptus grandis HOM05D000275 ORTHO05D003378 2.0e-06 56.2 91 33.0
Eucgr.A00744 Eucalyptus grandis HOM05D000275 ORTHO05D000181 2.6e-06 55.8 100 30.0
Lsat_1_v5_gn_4_33221 Lactuca sativa HOM05D009669 ORTHO05D000181 3.4e-06 55.5 95 32.6
PGSC0003DMG400025539 Solanum tuberosum HOM05D000275 ORTHO05D000181 3.4e-06 55.5 122 25.4
CAN.G986.15 Capsicum annuum HOM05D000275 ORTHO05D000181 4.5e-06 55.1 115 32.2
CAN.G1059.5 Capsicum annuum HOM05D000275 ORTHO05D000181 5.8e-06 54.7 92 31.5
FAN12G2565 Fragaria x ananassa HOM05D007676 ORTHO05D009456 5.8e-06 54.7 115 27.0
Solyc09g008500.3 Solanum lycopersicum HOM05D000275 ORTHO05D000181 5.8e-06 54.7 117 32.5
Sabra07G0111500 Salix brachista HOM05D007676 ORTHO05D009456 1.0e-05 53.9 118 23.7


User provided reference genes

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