Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G050800 Prunus persica HOM05D006116 ORTHO05D007795 4.1e-259 897.5 438 100.0
MD04G1057000 Malus domestica HOM05D006116 ORTHO05D007795 1.9e-232 808.9 437 89.9
FAN18G3779 Fragaria x ananassa HOM05D006116 ORTHO05D007795 9.5e-200 700.3 438 78.1
FvH4_5g20810 Fragaria vesca HOM05D006116 ORTHO05D007795 2.3e-198 695.7 438 77.6
FAN08G3374 Fragaria x ananassa HOM05D006116 ORTHO05D007795 8.9e-198 693.7 438 77.4
FAN04G0705 Fragaria x ananassa HOM05D006116 ORTHO05D007795 7.5e-197 690.6 438 77.2
vmacro00376 Vaccinium macrocarpon HOM05D006116 ORTHO05D007795 6.2e-191 671.0 439 74.3
COL.COLO4_06703 Corchorus olitorius HOM05D006116 ORTHO05D007795 1.3e-188 663.3 443 73.8
Rhsim11G0056500 Rhododendron simsii HOM05D006116 ORTHO05D007795 1.3e-188 663.3 438 72.6
CSS0043999 Camellia sinensis var. sinensis HOM05D006116 ORTHO05D007795 2.7e-186 655.6 440 71.6
RcHm_v2.0_Chr7g0207741 Rosa chinensis HOM05D006116 ORTHO05D007795 2.1e-183 646.0 438 73.7
Actinidia03408 Actinidia chinensis HOM05D006116 ORTHO05D007795 3.6e-183 645.2 438 72.4
Ciclev10020221m.g Citrus clementina HOM05D006116 ORTHO05D007795 6.4e-180 634.4 438 70.1
CiPaw.11G085600 Carya illinoinensis HOM05D006116 ORTHO05D007795 8.7e-177 624.0 438 70.8
Hma1.2p1_0414F.1_g147510 Hydrangea macrophylla HOM05D006116 ORTHO05D007795 8.7e-177 624.0 438 70.5
PGR042G3339 Punica granatum HOM05D006116 ORTHO05D007795 4.7e-175 618.2 451 68.1
Nitab4.5_0006135g0020 Nicotiana tabacum HOM05D006116 ORTHO05D007795 1.1e-174 617.1 438 68.3
CSS0034154 Camellia sinensis var. sinensis HOM05D006116 ORTHO05D007795 4.0e-174 615.1 440 68.2
Gorai.008G230000 Gossypium raimondii HOM05D006116 ORTHO05D007795 1.5e-173 613.2 441 69.4
Duzib205G0680 Durio zibethinus HOM05D006116 ORTHO05D007795 7.6e-173 610.9 438 70.1
Nitab4.5_0001255g0040 Nicotiana tabacum HOM05D006116 ORTHO05D007795 2.2e-172 609.4 444 66.9
QL12p007972 Quercus lobata HOM05D006116 ORTHO05D007795 2.9e-172 609.0 454 68.9
Gohir.A12G211900 Gossypium hirsutum HOM05D006116 ORTHO05D007795 1.1e-171 607.1 441 68.7
CAN.G1445.8 Capsicum annuum HOM05D006116 ORTHO05D007795 2.4e-171 605.9 438 67.6
Thecc.03G237000 Theobroma cacao HOM05D006116 ORTHO05D007795 2.4e-171 605.9 440 69.3
GSVIVG01013271001 Vitis vinifera HOM05D006116 ORTHO05D007795 3.2e-171 605.5 442 69.0
PGSC0003DMG400001856 Solanum tuberosum HOM05D006116 ORTHO05D007795 1.7e-169 599.7 437 66.1
Eucgr.E00329 Eucalyptus grandis HOM05D006116 ORTHO05D007795 2.3e-169 599.4 448 66.5
THA.LOC104813328 Tarenaya hassleriana HOM05D006116 ORTHO05D007795 7.3e-168 594.3 439 66.1
Sopen08g026090 Solanum pennellii HOM05D006116 ORTHO05D007795 2.1e-167 592.8 437 65.7
CANSAT21G1244 Cannabis sativa HOM05D006116 ORTHO05D007795 6.2e-167 591.3 467 64.9
MELO3C013885.2 Cucumis melo HOM05D006116 ORTHO05D007795 2.4e-166 589.3 438 66.4
Solyc08g077510.4 Solanum lycopersicum HOM05D006116 ORTHO05D007795 3.1e-166 589.0 440 64.8
Potri.003G085600 Populus trichocarpa HOM05D006116 ORTHO05D007795 4.0e-166 588.6 439 68.1
Oeu020145.1 Olea europaea HOM05D006116 ORTHO05D007795 6.9e-166 587.8 438 67.1
CsaV3_3G002130 Cucumis sativus L. HOM05D006116 ORTHO05D007795 9.9e-165 583.9 438 66.0
ClCG10G002040 Citrullus lanatus HOM05D006116 ORTHO05D007795 1.7e-164 583.2 438 67.1
Nn1g00701 Nelumbo nucifera HOM05D006116 ORTHO05D007795 8.4e-164 580.9 440 66.4
HanXRQChr03g0087311 Helianthus annuus HOM05D006116 ORTHO05D007795 5.4e-163 578.2 438 65.8
ECA240G2524 Erigeron canadensis HOM05D006116 ORTHO05D007795 9.3e-163 577.4 439 65.1
Cc08_g01540 Coffea canephora HOM05D006116 ORTHO05D007795 2.1e-162 576.2 446 65.7
Glyma.17G150200 Glycine max HOM05D006116 ORTHO05D007795 3.0e-161 572.4 437 66.1
TWI60G0034 Tripterygium wilfordii HOM05D006116 ORTHO05D007795 6.7e-161 571.2 437 67.0
Peaxi162Scf00084g00117 Petunia axillaris HOM05D006116 ORTHO05D007795 1.1e-160 570.5 437 66.6
arahy.Tifrunner.gnm1.ann1.F87Z6X Arachis hypogaea HOM05D006116 ORTHO05D007795 5.6e-160 568.2 453 64.5
arahy.Tifrunner.gnm1.ann1.L13TYF Arachis hypogaea HOM05D006116 ORTHO05D007795 5.6e-160 568.2 453 64.2
Ca_22031_v3 Cicer arietinum L. HOM05D006116 ORTHO05D007795 3.7e-159 565.5 441 66.4
Medtr4g099100 Medicago truncatula HOM05D006116 ORTHO05D007795 2.4e-158 562.8 452 63.5
Lalb_Chr05g0220761 Lupinus albus HOM05D006116 ORTHO05D007795 4.0e-158 562.0 442 63.1
Lj4g0012718 Lotus japonicus HOM05D006116 ORTHO05D007795 2.0e-157 559.7 451 63.0
BolC7t45369H Brassica oleracea HOM05D006116 ORTHO05D007795 1.7e-156 556.6 443 64.3
PSO732G0356 Papaver somniferum HOM05D006116 ORTHO05D007795 4.9e-156 555.1 444 63.3
C07p48610 Brassica napus HOM05D006116 ORTHO05D007795 8.4e-156 554.3 443 64.1
Manes.17G019700 Manihot esculenta HOM05D006116 ORTHO05D007795 1.2e-154 550.4 440 63.6
Phvul.003G227000 Phaseolus vulgaris HOM05D006116 ORTHO05D007795 1.2e-154 550.4 445 62.5
TPR.G11192 Trifolium pratense HOM05D006116 ORTHO05D007795 1.6e-154 550.1 446 63.0
VMungo0251G0386 Vigna mungo HOM05D006116 ORTHO05D007795 1.3e-153 547.0 457 61.3
DCAR_008310 Daucus carota HOM05D006116 ORTHO05D007795 2.5e-152 542.7 456 61.0
Aa31LG2G13210 Aethionema arabicum HOM05D006116 ORTHO05D007795 7.4e-152 541.2 418 65.8
Hund14464 Selenicereus undatus HOM05D006116 ORTHO05D007795 2.0e-149 533.1 446 58.7
Aqoxy7G00869 Aquilegia oxysepala HOM05D006116 ORTHO05D007795 3.4e-149 532.3 452 60.4
Lj8A287G22 Lonicera japonica HOM05D006116 ORTHO05D007795 5.8e-149 531.6 356 71.6
Gohir.D12G214400 Gossypium hirsutum HOM05D006116 ORTHO05D007795 3.8e-148 528.9 301 82.1
Lsat_1_v5_gn_6_88480 Lactuca sativa HOM05D006116 ORTHO05D007795 1.9e-147 526.6 447 59.7
Ah.12g053810 Amaranthus hybridus HOM05D006116 ORTHO05D007795 3.2e-147 525.8 447 60.4
PSO675G1792 Papaver somniferum HOM05D006116 ORTHO05D007795 7.1e-147 524.6 440 61.8
ClCG00G004790 Citrullus lanatus HOM05D006116 ORTHO05D007795 1.2e-146 523.9 438 62.6
CARHR223700 Cardamine hirsuta HOM05D006116 ORTHO05D007795 3.5e-146 522.3 439 61.3
MSTRG.1960 Avicennia marina HOM05D006116 ORTHO05D007795 1.8e-145 520.0 441 62.4
Migut.E00901 Erythranthe guttata HOM05D006116 ORTHO05D007795 2.3e-145 519.6 304 78.3
Sc07g0009020 Simmondsia chinensis HOM05D006116 ORTHO05D007795 5.1e-145 518.5 445 59.3
AL7G37600 Arabidopsis lyrata HOM05D006116 ORTHO05D007795 3.3e-144 515.8 440 61.4
A03p50320 Brassica napus HOM05D006116 ORTHO05D007795 2.2e-143 513.1 443 60.9
BraA03t14121Z Brassica rapa HOM05D006116 ORTHO05D007795 1.1e-142 510.8 439 60.8
Lalb_Chr09g0329681 Lupinus albus HOM05D006116 ORTHO05D007795 5.3e-142 508.4 326 73.3
Sed0023369 Sechium edule HOM05D006116 ORTHO05D007795 1.2e-141 507.3 440 60.2
Sp7g17070 Schrenkiella parvula HOM05D006116 ORTHO05D007795 2.0e-141 506.5 438 59.6
Os04g0542900 Oryza sativa ssp. japonica HOM05D006116 ORTHO05D007795 2.2e-140 503.1 470 56.6
unitig_21.g20374 Utricularia gibba HOM05D006116 ORTHO05D007795 1.4e-139 500.4 437 57.9
ATR0829G115 Amborella trichopoda HOM05D006116 ORTHO05D007795 1.2e-138 497.3 453 59.2
Thhalv10025290m.g Eutrema salsugineum HOM05D006116 ORTHO05D007795 6.1e-138 495.0 438 59.4
Zm00001eb075030 Zea mays HOM05D006116 ORTHO05D007795 6.1e-138 495.0 479 54.5
EL10Ac5g12218 Beta vulgaris HOM05D006116 ORTHO05D007795 6.7e-137 491.5 515 51.3
SGA_v2.0_scaffold20G09247 Striga asiatica HOM05D006116 ORTHO05D007795 6.7e-137 491.5 484 54.3
FAN13G0371 Fragaria x ananassa HOM05D006116 ORTHO05D007795 2.0e-136 490.0 337 72.1
TAR375G0725 Trochodendron aralioides HOM05D006116 ORTHO05D007795 2.2e-135 486.5 385 65.2
Carub.0007s2428 Capsella rubella HOM05D006116 ORTHO05D007795 8.2e-135 484.6 443 57.3
AUR62018802 Chenopodium quinoa HOM05D006116 ORTHO05D007795 9.1e-134 481.1 410 58.5
AUR62007200 Chenopodium quinoa HOM05D006116 ORTHO05D007795 4.2e-131 472.2 300 70.7
TAR375G0708 Trochodendron aralioides HOM05D006116 ORTHO05D007795 3.6e-130 469.2 369 65.0
SEGI_40490 Sequoiadendron giganteum HOM05D006116 ORTHO05D007795 7.4e-120 434.9 292 70.2
HPP92_020688 Vanilla planifolia HOM05D006116 ORTHO05D007795 1.6e-117 427.2 455 53.6
Psat4g077320 Pisum sativum HOM05D006116 ORTHO05D007795 2.3e-113 413.3 365 61.1
Pp3c14_16100 Physcomitrium patens HOM05D006116 ORTHO05D007795 6.8e-113 411.8 330 59.7
Pp3c14_16101 Physcomitrium patens HOM05D006116 ORTHO05D007795 6.8e-113 411.8 330 59.7
CiPaw.12G058000 Carya illinoinensis HOM05D006116 ORTHO05D007795 7.5e-112 408.3 229 82.5
Haze_08334 Corylus avellana HOM05D006116 ORTHO05D007795 4.8e-111 405.6 348 62.4
AagrBONN_evm.TU.Sc2ySwM_368.518 Anthoceros agrestis HOM05D006116 ORTHO05D007795 1.4e-110 404.1 445 48.3
Pp3c2_10960 Physcomitrium patens HOM05D006116 ORTHO05D007795 7.2e-107 391.7 316 61.1
SMO356G0030 Selaginella moellendorffii HOM05D006116 ORTHO05D007795 1.8e-105 387.1 300 61.0
Migut.E00812 Erythranthe guttata HOM05D006116 ORTHO05D007795 2.6e-104 383.3 217 80.6
Zm00001eb313880 Zea mays HOM05D006116 ORTHO05D007795 5.7e-104 382.1 266 65.8
Mapoly0141s0023 Marchantia polymorpha HOM05D006116 ORTHO05D007795 1.7e-103 380.6 373 52.0
BcaC06g33529 Brassica carinata HOM05D006116 ORTHO05D007795 1.6e-101 374.0 360 56.7
Zm00001eb091650 Zea mays HOM05D006116 ORTHO05D007795 4.4e-96 355.9 306 54.9
Zm00001eb319310 Zea mays HOM05D006116 ORTHO05D007795 2.3e-84 317.0 200 72.0
Dinv28896 Davidia involucrata HOM05D006116 ORTHO05D007795 1.5e-80 304.3 202 72.3
Zm00001eb129530 Zea mays HOM05D006116 ORTHO05D007795 8.3e-71 271.9 208 60.1
Zm00001eb391960 Zea mays HOM05D006116 ORTHO05D007795 8.3e-71 271.9 208 60.1
CBR_g27781 Chara braunii HOM05D006116 ORTHO05D007795 2.1e-66 257.3 389 39.3
Cre14.g631900 Chlamydomonas reinhardtii HOM05D006116 ORTHO05D007795 6.2e-66 255.8 278 43.2
Atru.chr9.1147 Acer truncatum HOM05D006116 ORTHO05D007795 2.8e-58 230.3 117 88.0
PSO732G0385 Papaver somniferum HOM05D006116 ORTHO05D007795 3.5e-53 213.4 254 48.0
Zm00001eb268110 Zea mays HOM05D006116 ORTHO05D007795 1.7e-47 194.5 196 49.0
Ca_20974_v3 Cicer arietinum L. HOM05D006116 ORTHO05D007795 3.2e-38 163.7 119 63.9
Zm00001eb276710 Zea mays HOM05D006116 ORTHO05D007795 9.3e-38 162.2 134 55.2
Lsat_1_v5_gn_7_9401 Lactuca sativa HOM05D006116 ORTHO05D000290 6.7e-36 156.0 127 59.1
TAR375G0859 Trochodendron aralioides HOM05D006116 ORTHO05D007795 1.6e-29 134.8 68 89.7
EL10Ac5g12217 Beta vulgaris HOM05D006116 ORTHO05D007795 3.5e-29 133.7 77 74.0
DCAR_005654 Daucus carota HOM05D006116 ORTHO05D007795 6.5e-23 112.8 68 73.5
CAN.G507.3 Capsicum annuum HOM05D006116 ORTHO05D007795 1.8e-20 104.8 73 63.0
CDE11G0087 Ceratophyllum demersum HOM05D006116 ORTHO05D007795 7.7e-16 89.4 52 75.0
TAR375G0706 Trochodendron aralioides HOM05D006116 ORTHO05D009946 5.0e-15 86.7 76 53.9
Atru.chr9.1146 Acer truncatum HOM05D006116 ORTHO05D007795 1.6e-13 81.6 107 44.9
CiPaw.12G058200 Carya illinoinensis HOM05D006116 ORTHO05D007795 2.3e-12 77.8 129 43.4
Aqoxy6G01690 Aquilegia oxysepala HOM05D006116 ORTHO05D007795 2.2e-10 71.2 120 30.0
Aqoxy7G03532 Aquilegia oxysepala HOM05D006116 ORTHO05D007795 4.5e-08 63.5 59 47.5
BolC8t48435H Brassica oleracea HOM05D006116 ORTHO05D007795 7.2e-06 56.2 38 60.5


User provided reference genes

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