Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 2.8e-36 155.2 108 100.0
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 2.9e-25 118.6 107 79.4
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 3.8e-25 118.2 108 66.7
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 2.5e-24 115.5 108 76.9
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 2.5e-24 115.5 108 76.9
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 7.2e-24 114.0 108 77.8
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 7.2e-24 114.0 108 63.9
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 8.8e-22 107.1 112 81.2
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 2.8e-20 102.1 112 78.6
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.2e-17 92.4 111 55.0
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.2e-17 92.4 111 55.0
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 2.9e-17 92.0 111 68.5
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 5.0e-17 91.3 108 55.6
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 6.5e-17 90.9 111 51.4
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 1.1e-16 90.1 113 69.9
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 1.1e-16 90.1 108 52.8
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 1.1e-16 90.1 109 72.5
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 1.1e-16 90.1 111 64.0
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 1.4e-16 89.7 110 55.5
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 3.2e-16 88.6 109 67.9
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 4.2e-16 88.2 112 53.6
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 7.2e-16 87.4 110 59.1
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 7.2e-16 87.4 106 57.5
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 9.4e-16 87.0 109 50.5
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 2.7e-15 85.5 110 47.3
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 3.6e-15 85.1 111 51.4
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 3.6e-15 85.1 112 51.8
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 3.6e-15 85.1 108 70.4
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 6.1e-15 84.3 109 51.4
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 8.0e-15 84.0 112 52.7
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 8.0e-15 84.0 109 53.2
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 1.0e-14 83.6 110 49.1
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 1.8e-14 82.8 113 50.4
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 2.3e-14 82.4 111 53.2
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 2.3e-14 82.4 112 49.1
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 3.9e-14 81.6 109 56.0
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 8.8e-14 80.5 113 51.3
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 1.1e-13 80.1 109 46.8
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 2.0e-13 79.3 105 45.7
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 2.6e-13 79.0 108 47.2
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 2.6e-13 79.0 108 46.3
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 3.3e-13 78.6 113 47.8
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 1.7e-12 76.3 112 50.9
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 2.2e-12 75.9 110 51.8
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 2.2e-12 75.9 113 49.6
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 2.8e-12 75.5 110 51.8
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 2.8e-12 75.5 111 49.5
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 2.8e-12 75.5 112 51.8
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 3.7e-12 75.1 108 44.4
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 3.7e-12 75.1 108 43.5
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 4.8e-12 74.7 110 50.9
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 6.3e-12 74.3 111 45.9
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 6.3e-12 74.3 110 50.0
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 8.2e-12 73.9 115 46.1
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 1.1e-11 73.6 106 49.1
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 1.1e-11 73.6 111 47.7
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 1.1e-11 73.6 111 47.7
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 1.1e-11 73.6 111 47.7
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 1.8e-11 72.8 108 40.7
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 1.8e-11 72.8 113 46.0
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 2.4e-11 72.4 112 47.3
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 3.1e-11 72.0 106 46.2
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 3.1e-11 72.0 108 40.7
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 3.1e-11 72.0 38 86.8
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 3.1e-11 72.0 108 44.4
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 3.1e-11 72.0 108 45.4
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 3.1e-11 72.0 110 46.4
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 4.1e-11 71.6 108 44.4
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 5.3e-11 71.2 109 44.0
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 5.3e-11 71.2 108 47.2
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 5.3e-11 71.2 109 46.8
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 7.0e-11 70.9 114 62.3
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 9.1e-11 70.5 113 45.1
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 9.1e-11 70.5 106 44.3
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 1.2e-10 70.1 117 44.4
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 1.2e-10 70.1 108 42.6
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.6e-10 69.7 109 45.9
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 2.6e-10 68.9 111 59.5
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 2.6e-10 68.9 110 47.3
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 2.6e-10 68.9 109 45.9
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 2.6e-10 68.9 110 44.5
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 3.5e-10 68.6 109 45.9
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 3.5e-10 68.6 107 42.1
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 4.5e-10 68.2 116 43.1
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 5.9e-10 67.8 113 46.0
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 7.7e-10 67.4 109 45.9
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 7.7e-10 67.4 108 41.7
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 7.7e-10 67.4 107 43.9
Nn7g36237 Nelumbo nucifera HOM05D004268 ORTHO05D004958 7.7e-10 67.4 113 57.5
Nn7g36238 Nelumbo nucifera HOM05D004268 ORTHO05D004958 7.7e-10 67.4 113 57.5
Oeu033136.1 Olea europaea HOM05D004268 ORTHO05D004958 7.7e-10 67.4 40 80.0
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 7.7e-10 67.4 112 43.8
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 1.0e-09 67.0 109 50.5
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 1.0e-09 67.0 109 50.5
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 1.0e-09 67.0 110 42.7
PGSC0003DMG400004639 Solanum tuberosum HOM05D004268 ORTHO05D004958 1.3e-09 66.6 110 60.9
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 1.3e-09 66.6 109 45.9
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 1.7e-09 66.2 115 51.3
Lalb_Chr01g0000351 Lupinus albus HOM05D004268 ORTHO05D004958 1.7e-09 66.2 109 58.7
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 2.2e-09 65.9 109 46.8
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 2.2e-09 65.9 109 45.0
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 2.9e-09 65.5 111 48.6
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 3.8e-09 65.1 108 40.7
Aqoxy1G00277 Aquilegia oxysepala HOM05D004268 ORTHO05D004958 3.8e-09 65.1 40 77.5
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 3.8e-09 65.1 109 58.7
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 6.5e-09 64.3 109 44.0
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 6.5e-09 64.3 109 42.2
Nitab4.5_0004438g0050 Nicotiana tabacum HOM05D004268 ORTHO05D004958 8.5e-09 63.9 110 60.0
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 1.1e-08 63.5 108 45.4
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 1.5e-08 63.2 36 72.2
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 1.5e-08 63.2 108 44.4
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 2.5e-08 62.4 109 44.0
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 2.5e-08 62.4 108 40.7
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 3.2e-08 62.0 108 43.5
BraA06t23458Z Brassica rapa HOM05D004268 ORTHO05D004958 3.2e-08 62.0 40 75.0
Migut.D00609 Erythranthe guttata HOM05D004268 ORTHO05D004958 3.2e-08 62.0 39 79.5
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 4.2e-08 61.6 108 43.5
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 4.2e-08 61.6 108 44.4
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 4.2e-08 61.6 108 44.4
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 4.2e-08 61.6 108 44.4
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 5.5e-08 61.2 108 43.5
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 5.5e-08 61.2 108 43.5
HanXRQChr13g0401101 Helianthus annuus HOM05D004268 ORTHO05D004958 5.5e-08 61.2 115 59.1
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 7.2e-08 60.8 113 42.5
Solyc12g099650.2 Solanum lycopersicum HOM05D004268 ORTHO05D004958 7.2e-08 60.8 111 58.6
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 7.2e-08 60.8 110 56.4
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 1.2e-07 60.1 106 43.4
Nitab4.5_0002741g0110 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.2e-07 60.1 39 74.4
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 2.1e-07 59.3 40 67.5
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 2.1e-07 59.3 113 38.9
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 3.6e-07 58.5 108 42.6
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 3.6e-07 58.5 110 37.3
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 3.6e-07 58.5 108 43.5
BraA01t03491Z Brassica rapa HOM05D004268 ORTHO05D004958 4.7e-07 58.2 109 59.6
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 4.7e-07 58.2 97 40.2
Solyc01g008510.3 Solanum lycopersicum HOM05D004268 ORTHO05D004958 4.7e-07 58.2 38 68.4
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 4.7e-07 58.2 111 43.2
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 6.1e-07 57.8 112 37.5
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 6.1e-07 57.8 111 38.7
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 6.1e-07 57.8 38 65.8
A01p33800 Brassica napus HOM05D004268 ORTHO05D004958 8.0e-07 57.4 109 59.6
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 1.4e-06 56.6 108 42.6
BolC1t04268H Brassica oleracea HOM05D004268 ORTHO05D004958 1.4e-06 56.6 109 59.6
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 1.8e-06 56.2 106 36.8
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 4.0e-06 55.1 109 38.5
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 8.8e-06 53.9 108 38.0
Nitab4.5_0000570g0060 Nicotiana tabacum HOM05D004268 ORTHO05D004958 8.8e-06 53.9 110 57.3


User provided reference genes

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