Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 0.0e+00 1320.8 745 100.0
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 6.3e-244 847.8 775 69.4
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 1.0e-233 813.9 776 67.3
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 2.0e-194 683.3 797 58.5
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 8.6e-193 677.9 797 57.7
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 4.3e-192 675.6 794 58.3
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.5e-189 667.2 787 60.2
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 4.9e-188 662.1 798 58.1
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 8.3e-188 661.4 792 56.7
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 5.3e-158 562.4 796 52.9
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 4.8e-151 539.3 781 53.0
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 1.1e-150 538.1 768 50.4
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 4.0e-150 536.2 815 52.3
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 6.9e-150 535.4 797 51.2
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 4.9e-148 529.3 801 49.7
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 1.1e-142 511.5 811 46.7
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 2.0e-141 507.3 735 52.5
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 6.0e-138 495.7 804 49.8
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 1.0e-137 495.0 810 47.9
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 2.8e-135 486.9 758 48.7
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 6.3e-135 485.7 768 48.0
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 1.2e-133 481.5 779 49.2
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 2.2e-132 477.2 779 46.1
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 5.0e-132 476.1 795 48.2
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 2.5e-131 473.8 794 46.5
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.0e-129 468.4 786 46.6
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 1.8e-129 467.6 750 46.4
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 2.2e-127 460.7 821 44.8
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 8.2e-127 458.8 825 47.0
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 3.4e-125 453.4 742 46.9
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 1.7e-124 451.1 794 46.7
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 2.2e-124 450.7 782 44.5
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 2.5e-123 447.2 760 46.4
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 2.1e-122 444.1 785 46.4
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 2.7e-122 443.7 750 46.0
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 1.0e-121 441.8 812 47.0
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 1.4e-121 441.4 813 47.0
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 2.3e-121 440.7 793 47.8
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 1.1e-120 438.3 878 43.2
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 5.7e-120 436.0 788 45.4
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 9.7e-120 435.3 799 45.2
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 9.1e-118 428.7 779 49.3
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 2.6e-117 427.2 819 41.5
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 5.9e-117 426.0 794 44.6
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 1.7e-116 424.5 817 43.0
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.9e-116 423.7 796 44.6
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 1.6e-114 417.9 726 44.6
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 2.3e-113 414.1 797 44.2
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 2.6e-112 410.6 732 44.8
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 3.7e-111 406.8 829 42.6
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 3.7e-111 406.8 791 45.3
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 9.1e-110 402.1 787 45.2
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 4.5e-109 399.8 796 43.3
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 2.2e-108 397.5 746 43.2
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 4.2e-107 393.3 701 43.8
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 6.1e-106 389.4 774 42.2
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 3.0e-105 387.1 764 42.7
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 1.2e-104 385.2 736 43.2
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 1.3e-103 381.7 723 42.0
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 2.0e-101 374.4 762 45.5
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 2.7e-101 374.0 723 40.1
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 4.5e-101 373.2 802 44.6
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 1.0e-100 372.1 756 45.0
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.3e-100 371.7 776 39.8
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 2.2e-100 370.9 758 41.0
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.9e-100 370.5 702 43.3
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 3.8e-100 370.2 661 45.8
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 2.5e-99 367.5 762 45.0
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 1.2e-98 365.2 769 43.7
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 2.7e-98 364.0 756 42.9
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 8.0e-98 362.5 657 43.4
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 1.8e-97 361.3 708 41.5
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 5.2e-97 359.8 788 40.2
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 6.8e-97 359.4 759 43.0
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 8.8e-97 359.0 782 43.0
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 1.7e-95 354.8 788 40.2
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 2.8e-95 354.0 820 40.4
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 2.4e-94 350.9 763 42.9
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 5.4e-94 349.7 801 41.3
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 2.0e-93 347.8 854 38.6
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 3.5e-93 347.1 730 43.2
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 7.7e-93 345.9 781 38.8
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 3.8e-92 343.6 751 39.7
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 5.0e-92 343.2 779 39.7
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.5e-91 341.7 740 39.7
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.9e-91 341.3 710 42.0
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 1.8e-89 334.7 698 44.1
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 3.0e-89 334.0 782 38.6
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 7.5e-88 329.3 780 37.8
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 8.3e-87 325.9 829 41.0
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 1.6e-85 321.6 781 38.2
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 7.8e-85 319.3 759 39.5
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 1.7e-84 318.2 825 38.5
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 1.0e-81 308.9 731 42.0
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 5.2e-81 306.6 772 40.7
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 5.8e-80 303.1 794 35.3
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 7.5e-80 302.8 833 35.8
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 1.7e-79 301.6 772 39.4
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 2.2e-79 301.2 743 39.3
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 4.6e-77 293.5 727 40.2
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 3.9e-76 290.4 750 40.9
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 1.5e-75 288.5 698 39.4
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 4.7e-74 283.5 787 35.6
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 1.1e-73 282.3 764 38.1
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 1.1e-73 282.3 841 35.3
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.2e-72 278.9 788 36.4
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 2.0e-72 278.1 783 35.9
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 1.7e-71 275.0 725 37.5
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 3.5e-69 267.3 706 34.6
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 4.6e-69 266.9 746 41.6
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 2.3e-68 264.6 723 35.8
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 1.1e-67 262.3 729 38.5
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 3.3e-67 260.8 782 34.7
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 2.1e-66 258.1 796 36.2
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 4.7e-66 256.9 740 35.7
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 6.8e-65 253.1 781 33.4
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 1.5e-64 251.9 809 36.7
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 2.0e-64 251.5 765 40.7
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 9.2e-62 242.7 757 33.9
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 6.4e-55 219.9 774 33.3
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 6.4e-55 219.9 774 33.3
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 9.2e-54 216.1 778 33.2
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 3.9e-52 210.7 786 34.0
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 4.3e-51 207.2 664 33.1
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 5.6e-51 206.8 780 31.8
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 1.2e-50 205.7 634 34.5
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 2.1e-50 204.9 658 33.3
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.1e-50 204.9 736 33.0
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 1.4e-49 202.2 153 68.6
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 4.0e-49 200.7 785 33.5
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 1.5e-48 198.7 658 32.8
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 1.5e-48 198.7 751 32.5
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.4e-46 191.4 739 31.9
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 9.3e-46 189.5 477 39.6
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.6e-45 188.7 739 32.9
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 2.1e-45 188.3 695 32.1
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 2.1e-45 188.3 701 32.5
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 6.0e-45 186.8 640 35.9
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 1.7e-44 185.3 714 32.2
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 5.1e-44 183.7 833 33.3
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 5.1e-44 183.7 903 30.8
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.8e-41 175.3 619 32.8
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 2.6e-40 171.4 799 31.9
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 5.8e-40 170.2 396 38.1
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 5.8e-40 170.2 880 31.7
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 9.9e-40 169.5 248 45.6
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 2.9e-39 167.9 463 38.0
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 3.9e-36 157.5 237 48.1
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 3.9e-36 157.5 269 43.9
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 6.7e-36 156.8 911 30.0
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 3.1e-33 147.9 318 40.3
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 3.4e-32 144.4 720 31.1
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 2.9e-31 141.4 515 33.0
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 3.8e-31 141.0 153 58.8
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 4.9e-31 140.6 207 47.8
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 6.4e-31 140.2 729 31.6
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 5.1e-28 130.6 150 50.0
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 6.7e-28 130.2 132 56.1
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 3.3e-27 127.9 492 31.1
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 1.6e-26 125.6 180 50.0
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 8.2e-26 123.2 111 61.3
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 1.9e-22 112.1 113 63.7
Actinidia33372 Actinidia chinensis HOM05D004118 ORTHO05D004686 4.3e-19 100.9 124 58.9
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 1.3e-15 89.4 702 25.4
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.1e-14 86.3 181 37.0
Lsat_1_v5_gn_5_162921 Lactuca sativa HOM05D004118 ORTHO05D004686 3.3e-11 74.7 77 59.7
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 7.4e-11 73.6 277 27.8
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 1.3e-10 72.8 421 26.8
TPR.G17527 Trifolium pratense HOM05D004118 ORTHO05D004686 1.4e-09 69.3 51 74.5
Cfa006246 Carpinus fangiana HOM05D002615 ORTHO05D002913 1.3e-07 62.8 62 54.8
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 1.1e-06 59.7 132 31.8


User provided reference genes

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