Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G139000 Prunus persica HOM05D006956 ORTHO05D008824 5.4e-113 411.0 205 100.0
MD10G1203100 Malus domestica HOM05D006956 ORTHO05D008824 5.6e-94 347.8 195 87.7
Dinv19614 Davidia involucrata HOM05D006956 ORTHO05D008824 2.4e-89 332.4 193 83.4
Cfa010806 Carpinus fangiana HOM05D006956 ORTHO05D008824 5.4e-89 331.3 193 83.9
CSS0020916 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 1.2e-88 330.1 192 80.2
RcHm_v2.0_Chr5g0026331 Rosa chinensis HOM05D006956 ORTHO05D008824 6.0e-88 327.8 192 83.9
Rhsim04G0005600 Rhododendron simsii HOM05D006956 ORTHO05D008824 7.8e-88 327.4 194 80.9
Haze_03154 Corylus avellana HOM05D006956 ORTHO05D008824 1.3e-87 326.6 198 80.8
FvH4_3g15651 Fragaria vesca HOM05D006956 ORTHO05D008824 1.3e-87 326.6 192 84.4
FAN21G1707 Fragaria x ananassa HOM05D006956 ORTHO05D008824 3.0e-87 325.5 192 83.9
Peaxi162Scf00286g00448 Petunia axillaris HOM05D006956 ORTHO05D008824 3.0e-87 325.5 194 79.4
Potri.001G439000 Populus trichocarpa HOM05D006956 ORTHO05D008824 8.7e-87 323.9 197 79.2
Solyc09g098220.3 Solanum lycopersicum HOM05D006956 ORTHO05D008824 8.7e-87 323.9 195 79.0
Sopen09g036160 Solanum pennellii HOM05D006956 ORTHO05D008824 8.7e-87 323.9 195 79.0
COL.COLO4_07377 Corchorus olitorius HOM05D006956 ORTHO05D008824 1.9e-86 322.8 194 80.4
QL04p076576 Quercus lobata HOM05D006956 ORTHO05D008824 4.3e-86 321.6 193 80.8
Hma1.2p1_0334F.1_g128720 Hydrangea macrophylla HOM05D006956 ORTHO05D008824 5.6e-86 321.2 192 80.2
CiPaw.11G066300 Carya illinoinensis HOM05D006956 ORTHO05D008824 9.6e-86 320.5 197 78.2
Nn7g38051 Nelumbo nucifera HOM05D006956 ORTHO05D008824 2.1e-85 319.3 196 76.0
Sabra16G0296900 Salix brachista HOM05D006956 ORTHO05D008824 3.6e-85 318.5 198 78.8
Thecc.07G151600 Theobroma cacao HOM05D006956 ORTHO05D008824 4.8e-85 318.2 195 80.0
CAN.G710.39 Capsicum annuum HOM05D006956 ORTHO05D008824 1.1e-84 317.0 196 77.6
TAR362G0399 Trochodendron aralioides HOM05D006956 ORTHO05D008824 3.1e-84 315.5 194 78.4
CSS0000379 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 5.3e-84 314.7 194 77.8
FAN11G3326 Fragaria x ananassa HOM05D006956 ORTHO05D008824 6.9e-84 314.3 209 77.0
Cc05_g16140 Coffea canephora HOM05D006956 ORTHO05D008824 9.0e-84 313.9 194 76.3
Gohir.A11G291500 Gossypium hirsutum HOM05D006956 ORTHO05D008824 9.0e-84 313.9 191 79.6
TWI39G0297 Tripterygium wilfordii HOM05D006956 ORTHO05D008824 2.6e-83 312.4 193 78.2
Gorai.007G335600 Gossypium raimondii HOM05D006956 ORTHO05D008824 7.6e-83 310.8 191 78.5
MSTRG.13068 Avicennia marina HOM05D006956 ORTHO05D008824 9.9e-83 310.5 193 75.6
vmacro00957 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 3.8e-82 308.5 192 78.1
Phvul.005G057800 Phaseolus vulgaris HOM05D006956 ORTHO05D008824 1.4e-81 306.6 197 72.6
Atru.chr9.1519 Acer truncatum HOM05D006956 ORTHO05D008824 3.2e-81 305.4 193 76.7
Nitab4.5_0001526g0100 Nicotiana tabacum HOM05D006956 ORTHO05D008824 4.2e-81 305.1 222 68.5
PGR142G1185 Punica granatum HOM05D006956 ORTHO05D008824 4.2e-81 305.1 192 77.6
CANSAT54G1214 Cannabis sativa HOM05D006956 ORTHO05D008824 1.2e-80 303.5 186 80.1
VMungo1080G0523 Vigna mungo HOM05D006956 ORTHO05D008824 2.1e-80 302.8 197 71.6
MELO3C019670.2 Cucumis melo HOM05D006956 ORTHO05D008824 3.5e-80 302.0 192 75.5
Lj3g0018815 Lotus japonicus HOM05D006956 ORTHO05D008824 4.6e-80 301.6 191 74.9
CsaV3_6G013760 Cucumis sativus L. HOM05D006956 ORTHO05D008824 6.0e-80 301.2 193 76.7
Ciclev10022296m.g Citrus clementina HOM05D006956 ORTHO05D008824 1.8e-79 299.7 190 77.4
Migut.H01688 Erythranthe guttata HOM05D006956 ORTHO05D008824 2.3e-79 299.3 192 72.9
Glyma.15G256600 Glycine max HOM05D006956 ORTHO05D008824 3.0e-79 298.9 190 74.7
Psat1g012040 Pisum sativum HOM05D006956 ORTHO05D008824 5.1e-79 298.1 191 74.9
Manes.06G172400 Manihot esculenta HOM05D006956 ORTHO05D008824 1.5e-78 296.6 194 75.8
Medtr2g069340 Medicago truncatula HOM05D006956 ORTHO05D008824 1.5e-78 296.6 191 73.8
Eucgr.A00498 Eucalyptus grandis HOM05D006956 ORTHO05D008824 2.5e-78 295.8 191 72.8
Aqoxy1G01495 Aquilegia oxysepala HOM05D006956 ORTHO05D008824 9.6e-78 293.9 186 75.8
TPR.G9744 Trifolium pratense HOM05D006956 ORTHO05D008824 9.6e-78 293.9 191 73.3
ClCG02G018480 Citrullus lanatus HOM05D006956 ORTHO05D008824 1.6e-77 293.1 212 68.9
Lj3g0016125 Lotus japonicus HOM05D006956 ORTHO05D008824 2.1e-77 292.7 191 72.3
SalBow5G4858 Salvia bowleyana HOM05D006956 ORTHO05D008824 2.8e-77 292.4 193 71.5
arahy.Tifrunner.gnm1.ann1.JC2BA5 Arachis hypogaea HOM05D006956 ORTHO05D008824 1.4e-76 290.0 195 68.7
Lalb_Chr20g0108711 Lupinus albus HOM05D006956 ORTHO05D008824 2.4e-76 289.3 191 71.2
Thhalv10008810m.g Eutrema salsugineum HOM05D006956 ORTHO05D008824 5.3e-76 288.1 196 69.4
Ca_03670_v3 Cicer arietinum L. HOM05D006956 ORTHO05D008824 9.0e-76 287.3 191 71.7
AT1G16590 Arabidopsis thaliana HOM05D006956 ORTHO05D008824 1.5e-75 286.6 196 67.3
THA.LOC104808124 Tarenaya hassleriana HOM05D006956 ORTHO05D008824 5.8e-75 284.6 193 70.5
AL1G28750 Arabidopsis lyrata HOM05D006956 ORTHO05D008824 1.3e-74 283.5 196 69.4
BraA09t41455Z Brassica rapa HOM05D006956 ORTHO05D008824 2.2e-74 282.7 201 66.7
Cfa010808 Carpinus fangiana HOM05D006956 ORTHO05D008824 2.9e-74 282.3 175 80.0
C08p44410 Brassica napus HOM05D006956 ORTHO05D008824 4.9e-74 281.6 194 67.5
AUR62042418 Chenopodium quinoa HOM05D006956 ORTHO05D008824 6.4e-74 281.2 188 71.3
A09p60820 Brassica napus HOM05D006956 ORTHO05D008824 1.1e-73 280.4 201 66.2
BolC8t51982H Brassica oleracea HOM05D006956 ORTHO05D008824 1.1e-73 280.4 191 69.6
AUR62026907 Chenopodium quinoa HOM05D006956 ORTHO05D008824 4.2e-73 278.5 194 69.1
CARHR017060 Cardamine hirsuta HOM05D006956 ORTHO05D008824 5.5e-73 278.1 195 67.7
GSVIVG01020406001 Vitis vinifera HOM05D006956 ORTHO05D008824 2.1e-72 276.2 164 82.3
PGSC0003DMG400014067 Solanum tuberosum HOM05D006956 ORTHO05D008466 6.0e-72 274.6 168 76.8
Aa31LG7G1120 Aethionema arabicum HOM05D006956 ORTHO05D008824 1.3e-71 273.5 210 62.9
arahy.Tifrunner.gnm1.ann1.82TPB7 Arachis hypogaea HOM05D006956 ORTHO05D008824 5.1e-71 271.6 226 58.8
HPP92_011671 Vanilla planifolia HOM05D006956 ORTHO05D008824 1.1e-70 270.4 193 64.2
SGA_v2.0_scaffold49G18176 Striga asiatica HOM05D006956 ORTHO05D008824 2.5e-70 269.2 191 68.1
CDE05G1956 Ceratophyllum demersum HOM05D003342 ORTHO05D003861 9.0e-68 260.8 193 67.4
PSO210G3417 Papaver somniferum HOM05D006956 ORTHO05D008824 9.0e-68 260.8 192 66.7
Carub.0001s1634 Capsella rubella HOM05D006956 ORTHO05D008824 1.5e-67 260.0 191 65.4
PSO223G0077 Papaver somniferum HOM05D006956 ORTHO05D008824 2.6e-67 259.2 192 66.7
Zm00001eb198240 Zea mays HOM05D006956 ORTHO05D008824 3.4e-67 258.8 193 63.7
Sp1g14740 Schrenkiella parvula HOM05D006956 ORTHO05D008824 2.1e-64 249.6 197 60.4
Sc08g0007560 Simmondsia chinensis HOM05D006956 ORTHO05D008824 2.5e-62 242.7 158 71.5
MBI18_g45405_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 1.4e-60 236.9 157 71.3
HanXRQChr08g0231891 Helianthus annuus HOM05D006956 ORTHO05D008824 3.4e-59 232.3 192 60.9
ECA247G3084 Erigeron canadensis HOM05D006956 ORTHO05D008824 4.5e-59 231.9 195 59.0
Prupe.4G139100 Prunus persica HOM05D006956 ORTHO05D008824 1.3e-58 230.3 174 73.6
Sed0013658 Sechium edule HOM05D006956 ORTHO05D008824 9.3e-57 224.2 144 75.7
Prupe.4G141800 Prunus persica HOM05D006956 ORTHO05D008824 1.8e-55 219.9 121 90.9
FAN25G3578 Fragaria x ananassa HOM05D006956 ORTHO05D008824 6.3e-53 211.5 127 84.3
QL04p076191 Quercus lobata HOM05D006956 ORTHO05D008824 1.3e-50 203.8 127 76.4
QL93p0133_0021 Quercus lobata HOM05D006956 ORTHO05D008824 1.3e-50 203.8 127 76.4
MD17G1180100 Malus domestica HOM05D006956 ORTHO05D008824 1.9e-49 199.9 127 81.1
RcHm_v2.0_Chr5g0026311 Rosa chinensis HOM05D006956 ORTHO05D008824 3.6e-48 195.7 192 56.2
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 8.8e-47 191.0 182 52.2
SMO340G0149 Selaginella moellendorffii HOM05D006956 ORTHO05D008824 1.1e-44 184.1 187 46.0
Actinidia35432 Actinidia chinensis HOM05D006956 ORTHO05D008824 2.2e-42 176.4 136 66.9
Lsat_1_v5_gn_6_63040 Lactuca sativa HOM05D006956 ORTHO05D008824 1.1e-41 174.1 163 53.4
Pp3c4_6830 Physcomitrium patens HOM05D006956 ORTHO05D008824 2.1e-40 169.9 204 42.6
Pp3c4_6840 Physcomitrium patens HOM05D006956 ORTHO05D008824 1.1e-36 157.5 186 39.8
SEGI_37897 Sequoiadendron giganteum HOM05D006956 ORTHO05D008824 7.7e-35 151.4 130 55.4
Mapoly0023s0023 Marchantia polymorpha HOM05D006956 ORTHO05D008824 1.2e-32 144.1 128 53.1
FAN16G1261 Fragaria x ananassa HOM05D006956 ORTHO05D008824 1.8e-28 130.2 104 68.3
vmacro09782 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 5.0e-26 122.1 65 83.1
vmacro22747 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 8.5e-26 121.3 169 43.2
Potri.011G142501 Populus trichocarpa HOM05D006956 ORTHO05D008824 3.2e-25 119.4 91 65.9
MD05G1220700 Malus domestica HOM05D006956 ORTHO05D008824 3.6e-24 115.9 89 64.0
Lju41A37T48 Lonicera japonica HOM05D006956 ORTHO05D008824 8.0e-24 114.8 79 65.8
MBI18_g44288_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 5.7e-22 108.6 64 78.1
ATR0753G159 Amborella trichopoda HOM05D006956 ORTHO05D008824 1.7e-21 107.1 73 68.5
Glyma.08G170300 Glycine max HOM05D006956 ORTHO05D008824 2.2e-21 106.7 157 41.4
RcHm_v2.0_Chr5g0031421 Rosa chinensis HOM05D006956 ORTHO05D008824 1.6e-19 100.5 108 57.4
Cre13.g575333 Chlamydomonas reinhardtii HOM05D006956 ORTHO05D008824 4.5e-19 99.0 176 35.8
Cpa.g.sc67.70 Carica papaya HOM05D006956 ORTHO05D008824 1.8e-15 87.0 64 64.1
Lalb_Chr25g0284921 Lupinus albus HOM05D006956 ORTHO05D008824 1.8e-12 77.0 160 33.8
SHI21449 Sapria himalayana HOM05D000257 ORTHO05D008466 3.5e-11 72.8 40 77.5
Lju41A37T47 Lonicera japonica HOM05D006956 ORTHO05D008824 6.6e-10 68.6 44 70.5
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 6.1e-08 62.0 159 28.3
SGA_v2.0_scaffold62G21353 Striga asiatica HOM05D058974 ORTHO05D402092 8.9e-07 58.2 33 81.8
MCO02G468 Micromonas commoda HOM05D006956 ORTHO05D008824 3.4e-06 56.2 85 40.0
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 3.4e-06 56.2 187 24.1
AagrBONN_evm.TU.Sc2ySwM_362.2804 Anthoceros agrestis HOM05D006956 ORTHO05D008824 4.4e-06 55.8 65 47.7


User provided reference genes

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