Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G127000 Prunus persica HOM05D002505 ORTHO05D006559 2.1e-226 788.9 459 100.0
MD05G1239100 Malus domestica HOM05D002505 ORTHO05D006559 1.4e-156 557.0 476 72.3
MD10G1217100 Malus domestica HOM05D002505 ORTHO05D006559 7.2e-150 534.6 531 65.2
FAN25G1470 Fragaria x ananassa HOM05D002505 ORTHO05D006559 5.4e-121 438.7 473 63.6
RcHm_v2.0_Chr5g0023231 Rosa chinensis HOM05D002505 ORTHO05D006559 3.5e-120 436.0 472 66.3
FvH4_3g14000 Fragaria vesca HOM05D002505 ORTHO05D006559 3.9e-119 432.6 485 59.4
FAN16G0440 Fragaria x ananassa HOM05D002505 ORTHO05D006559 3.3e-118 429.5 494 59.5
FAN21G2970 Fragaria x ananassa HOM05D002505 ORTHO05D006559 8.9e-116 421.4 494 57.5
FAN11G2806 Fragaria x ananassa HOM05D002505 ORTHO05D006559 4.9e-114 415.6 481 57.0
ClCG07G010710 Citrullus lanatus HOM05D002505 ORTHO05D006559 4.9e-106 389.0 479 52.6
CiPaw.15G113000 Carya illinoinensis HOM05D002505 ORTHO05D006559 2.4e-105 386.7 393 58.5
CSS0039073 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 2.3e-103 380.2 397 57.2
TWI59G0446 Tripterygium wilfordii HOM05D002505 ORTHO05D006559 2.5e-102 376.7 480 53.8
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 4.3e-102 375.9 508 49.8
Nn4g25029 Nelumbo nucifera HOM05D002505 ORTHO05D006559 7.3e-102 375.2 437 55.1
Atru.chr3.1220 Acer truncatum HOM05D002505 ORTHO05D006559 3.4e-99 366.3 470 52.6
MELO3C016182.2 Cucumis melo HOM05D002505 ORTHO05D006559 7.6e-99 365.2 486 52.9
Peaxi162Scf00225g00129 Petunia axillaris HOM05D002505 ORTHO05D006559 6.4e-98 362.1 318 67.6
Lj6g0017559 Lotus japonicus HOM05D002505 ORTHO05D006559 1.1e-97 361.3 520 51.3
Nitab4.5_0002840g0110 Nicotiana tabacum HOM05D002505 ORTHO05D006559 1.1e-97 361.3 317 66.9
Cpa.g.sc77.87 Carica papaya HOM05D002505 ORTHO05D006559 5.4e-97 359.0 384 56.5
Glyma.09G030100 Glycine max HOM05D002505 ORTHO05D006559 7.1e-97 358.6 492 53.9
Atru.chr1.1039 Acer truncatum HOM05D002505 ORTHO05D006559 1.6e-96 357.5 477 53.9
Sopen01g041610 Solanum pennellii HOM05D002505 ORTHO05D006559 1.6e-96 357.5 317 65.9
Sed0021026 Sechium edule HOM05D002505 ORTHO05D006559 2.7e-96 356.7 487 53.2
CANSAT21G0880 Cannabis sativa HOM05D002505 ORTHO05D006559 6.0e-96 355.5 500 56.4
Duzib168G0650 Durio zibethinus HOM05D002505 ORTHO05D006559 1.8e-95 354.0 399 55.6
Actinidia12750 Actinidia chinensis HOM05D002505 ORTHO05D006559 3.0e-95 353.2 406 53.9
CsaV3_4G007590 Cucumis sativus L. HOM05D002505 ORTHO05D006559 3.0e-95 353.2 490 52.7
PGSC0003DMG400022499 Solanum tuberosum HOM05D002505 ORTHO05D006559 6.7e-95 352.1 396 57.1
Solyc01g098030.4 Solanum lycopersicum HOM05D002505 ORTHO05D006559 1.5e-94 350.9 313 64.5
CSS0016681 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 1.9e-94 350.5 410 53.2
TAR626G1844 Trochodendron aralioides HOM05D002505 ORTHO05D006559 1.9e-94 350.5 494 50.8
Rhsim09G0088500 Rhododendron simsii HOM05D002505 ORTHO05D006559 2.5e-94 350.1 405 53.3
Eucgr.D02598 Eucalyptus grandis HOM05D002505 ORTHO05D006559 7.4e-94 348.6 507 56.6
CAN.G134.186 Capsicum annuum HOM05D002505 ORTHO05D006559 1.3e-93 347.8 316 67.4
Thecc.09G195000 Theobroma cacao HOM05D002505 ORTHO05D006559 3.7e-93 346.3 314 65.3
Phvul.006G073200 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 3.1e-92 343.2 505 51.9
Sc18g0006950 Simmondsia chinensis HOM05D002505 ORTHO05D006559 4.0e-92 342.8 405 58.3
MSTRG.14571 Avicennia marina HOM05D002505 ORTHO05D006559 5.3e-92 342.4 406 54.7
Nitab4.5_0002361g0170 Nicotiana tabacum HOM05D002505 ORTHO05D006559 1.5e-91 340.9 319 65.8
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea HOM05D002505 ORTHO05D006559 3.4e-91 339.7 419 53.5
Gohir.A13G207000 Gossypium hirsutum HOM05D002505 ORTHO05D006559 2.9e-90 336.7 497 50.7
Gohir.D13G211600 Gossypium hirsutum HOM05D002505 ORTHO05D006559 3.8e-90 336.3 494 49.6
Gorai.013G241700 Gossypium raimondii HOM05D002505 ORTHO05D006559 8.4e-90 335.1 494 51.2
Oeu019749.1 Olea europaea HOM05D002505 ORTHO05D006559 1.1e-89 334.7 415 52.5
vmacro00789 Vaccinium macrocarpon HOM05D002505 ORTHO05D006559 3.2e-89 333.2 426 49.1
Cc05_g16590 Coffea canephora HOM05D002505 ORTHO05D006559 9.3e-89 331.6 374 57.2
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea HOM05D002505 ORTHO05D006559 1.2e-88 331.3 517 48.4
Phvul.006G122700 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 2.1e-88 330.5 358 61.2
VMungo0540G1128 Vigna mungo HOM05D002505 ORTHO05D006559 4.6e-88 329.3 382 58.1
Ca_18602_v3 Cicer arietinum L. HOM05D002505 ORTHO05D006559 6.0e-88 328.9 511 52.6
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea HOM05D002505 ORTHO05D006559 7.9e-88 328.6 508 49.8
Potri.015G137000 Populus trichocarpa HOM05D002505 ORTHO05D006559 2.3e-87 327.0 487 49.9
VMungo1309G1878 Vigna mungo HOM05D002505 ORTHO05D006559 5.1e-87 325.9 410 55.1
GSVIVG01031552001 Vitis vinifera HOM05D002505 ORTHO05D006559 2.5e-86 323.6 209 76.6
Manes.08G161700 Manihot esculenta HOM05D002505 ORTHO05D006559 6.9e-84 315.5 493 50.5
SGA_v2.0_scaffold49G18207 Striga asiatica HOM05D002505 ORTHO05D006559 2.2e-82 310.5 402 53.7
Hund09330 Selenicereus undatus HOM05D002505 ORTHO05D006559 9.3e-81 305.1 412 51.5
PGR102G1955 Punica granatum HOM05D002505 ORTHO05D006559 1.6e-80 304.3 496 47.8
Migut.H01653 Erythranthe guttata HOM05D002505 ORTHO05D006559 2.7e-80 303.5 327 58.7
Ah.09g227860 Amaranthus hybridus HOM05D002505 ORTHO05D006559 3.0e-79 300.1 406 46.3
Medtr8g078230 Medicago truncatula HOM05D002505 ORTHO05D006559 8.7e-79 298.5 341 56.9
HanXRQChr05g0159341 Helianthus annuus HOM05D002505 ORTHO05D006559 1.1e-78 298.1 323 53.6
Rhsim06G0244600 Rhododendron simsii HOM05D002505 ORTHO05D006559 1.5e-78 297.7 370 53.5
CDE05G0972 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 5.7e-78 295.8 399 47.4
AT1G53645 Arabidopsis thaliana HOM05D002505 ORTHO05D006559 1.3e-77 294.7 359 52.6
EL10Ac5g10510 Beta vulgaris HOM05D002505 ORTHO05D006559 1.6e-77 294.3 434 44.7
HPP92_002279 Vanilla planifolia HOM05D002505 ORTHO05D006559 8.2e-77 292.0 377 47.5
DCAR_009664 Daucus carota HOM05D002505 ORTHO05D006559 1.8e-76 290.8 187 71.7
Lsat_1_v5_gn_5_3041 Lactuca sativa HOM05D002505 ORTHO05D006559 1.8e-76 290.8 395 50.6
AL1G62310 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 2.4e-76 290.4 353 52.7
CARHR043910 Cardamine hirsuta HOM05D002505 ORTHO05D006559 4.1e-76 289.7 354 53.4
PSO170G3666 Papaver somniferum HOM05D002505 ORTHO05D006559 4.1e-76 289.7 425 46.8
THA.LOC104822601 Tarenaya hassleriana HOM05D002505 ORTHO05D006559 5.3e-76 289.3 407 45.7
Sp1g40180 Schrenkiella parvula HOM05D002505 ORTHO05D006559 2.0e-75 287.3 315 58.4
PSO017G2893 Papaver somniferum HOM05D002505 ORTHO05D006559 2.6e-75 287.0 423 46.6
Carub.0001s4291 Capsella rubella HOM05D002505 ORTHO05D006559 3.4e-75 286.6 348 53.2
AUR62011379 Chenopodium quinoa HOM05D002505 ORTHO05D006559 3.4e-75 286.6 409 51.1
Aa31LG10G1650 Aethionema arabicum HOM05D002505 ORTHO05D006559 4.5e-75 286.2 380 48.9
C06p09440 Brassica napus HOM05D001023 ORTHO05D006559 2.2e-74 283.9 313 57.8
Thhalv10011382m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 2.9e-74 283.5 437 46.5
Lalb_Chr20g0120281 Lupinus albus HOM05D002505 ORTHO05D006559 2.9e-74 283.5 478 46.7
ECA246G4077 Erigeron canadensis HOM05D002505 ORTHO05D006559 3.8e-74 283.1 336 52.1
AUR62016680 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.9e-73 280.8 423 49.6
SHI32899 Sapria himalayana HOM05D002505 ORTHO05D006559 1.9e-73 280.8 418 46.2
Aqoxy1G00117 Aquilegia oxysepala HOM05D002505 ORTHO05D006559 5.5e-73 279.3 350 50.9
CDE02G1608 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 7.2e-73 278.9 348 50.3
A06p00890 Brassica napus HOM05D001023 ORTHO05D006559 9.3e-73 278.5 315 57.1
BraA06t23318Z Brassica rapa HOM05D001023 ORTHO05D006559 9.3e-73 278.5 315 57.1
BcaB02g10898 Brassica carinata HOM05D002505 ORTHO05D006559 2.1e-72 277.3 485 43.9
AUR62002958 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.3e-71 274.6 397 45.6
Sabra15G0148600 Salix brachista HOM05D002505 ORTHO05D006559 1.8e-71 274.2 493 41.8
Psat4g091000 Pisum sativum HOM05D002505 ORTHO05D006559 3.9e-71 273.1 387 50.6
Lj1C206G15 Lonicera japonica HOM05D002505 ORTHO05D006559 1.5e-70 271.2 165 80.0
ATR0057G033 Amborella trichopoda HOM05D002505 ORTHO05D006559 1.9e-70 270.8 376 50.0
BcaC08g43545 Brassica carinata HOM05D002505 ORTHO05D006559 2.5e-70 270.4 386 49.2
BolC6t36013H Brassica oleracea HOM05D001023 ORTHO05D006559 4.3e-70 269.6 386 49.2
Ciclev10019766m.g Citrus clementina HOM05D002505 ORTHO05D006559 4.3e-70 269.6 371 53.9
BcaB07g33312 Brassica carinata HOM05D002505 ORTHO05D006559 6.3e-69 265.8 321 54.8
AUR62007763 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.8e-68 264.2 414 43.2
Os06g0664400 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D006559 1.6e-64 251.1 406 42.9
unitig_21.g20249 Utricularia gibba HOM05D002505 ORTHO05D006559 1.6e-64 251.1 192 61.5
Zm00001eb060430 Zea mays HOM05D002505 ORTHO05D006559 5.7e-62 242.7 419 40.3
Dinv17234 Davidia involucrata HOM05D002505 ORTHO05D006559 2.4e-60 237.3 403 44.9
BolC6t36693H Brassica oleracea HOM05D002505 ORTHO05D006559 5.5e-57 226.1 165 64.8
QL04p094522 Quercus lobata HOM05D002505 ORTHO05D000632 1.4e-55 221.5 590 35.9
Haze_18498 Corylus avellana HOM05D002505 ORTHO05D006559 1.1e-54 218.4 299 55.9
A05p18000 Brassica napus HOM05D002505 ORTHO05D006559 5.9e-51 206.1 177 57.6
C06p15180 Brassica napus HOM05D002505 ORTHO05D006559 5.9e-51 206.1 140 68.6
BraA05t20694Z Brassica rapa HOM05D002505 ORTHO05D006559 5.9e-51 206.1 177 57.6
Thhalv10012156m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 3.0e-39 167.2 107 72.0
BcaC08g44112 Brassica carinata HOM05D002505 ORTHO05D006559 5.2e-39 166.4 139 59.0
Glyma.15G135900 Glycine max HOM05D002505 ORTHO05D006559 4.5e-35 153.3 119 64.7
CSS0015020 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 1.5e-33 148.3 264 44.3
Dinv29488 Davidia involucrata HOM05D002505 ORTHO05D006559 3.3e-33 147.1 90 77.8
Ah.13g066500 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.6e-32 144.8 310 35.8
Ah.07g202770 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.8e-31 141.4 87 78.2
Mapoly0043s0004 Marchantia polymorpha HOM05D002505 ORTHO05D006559 2.7e-27 127.5 159 37.7
Pp3c12_26140 Physcomitrium patens HOM05D002505 ORTHO05D006559 5.6e-25 119.8 170 37.1
RcHm_v2.0_Chr5g0023281 Rosa chinensis HOM05D002505 ORTHO05D006559 3.4e-22 110.5 62 90.3
Actinidia26206 Actinidia chinensis HOM05D002505 ORTHO05D006559 1.3e-21 108.6 64 81.2
AagrBONN_evm.TU.Sc2ySwM_228.276 Anthoceros agrestis HOM05D002505 ORTHO05D006559 4.9e-21 106.7 150 34.7
Haze_18499 Corylus avellana HOM05D002505 ORTHO05D006559 2.7e-19 100.9 62 77.4
QL04p094482 Quercus lobata HOM05D000280 ORTHO05D006559 2.7e-19 100.9 63 77.8
Ah.13g066490 Amaranthus hybridus HOM05D002505 ORTHO05D006559 3.3e-17 94.0 63 76.2
SEGI_13390 Sequoiadendron giganteum HOM05D002505 ORTHO05D006559 4.0e-15 87.0 81 49.4
COL.COLO4_21461 Corchorus olitorius HOM05D002505 ORTHO05D006559 1.2e-11 75.5 352 37.2
Actinidia26205 Actinidia chinensis HOM05D002505 ORTHO05D006559 1.5e-06 58.5 220 30.0


User provided reference genes

Program Settings