Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G120200 Prunus persica HOM05D005477 ORTHO05D006721 7.1e-40 166.8 82 100.0
MD05G1243500 Malus domestica HOM05D005477 ORTHO05D006721 3.0e-38 161.4 82 93.9
MD10G1225400 Malus domestica HOM05D005477 ORTHO05D006721 5.1e-38 160.6 82 93.9
FvH4_3g13280 Fragaria vesca HOM05D005477 ORTHO05D006721 9.6e-37 156.4 82 90.2
FAN11G1325 Fragaria x ananassa HOM05D005477 ORTHO05D006721 9.6e-37 156.4 82 90.2
FAN16G3377 Fragaria x ananassa HOM05D005477 ORTHO05D006721 9.6e-37 156.4 82 90.2
FAN21G3865 Fragaria x ananassa HOM05D005477 ORTHO05D006721 9.6e-37 156.4 82 90.2
Dinv17881 Davidia involucrata HOM05D005477 ORTHO05D006721 1.6e-36 155.6 82 91.5
FAN25G0727 Fragaria x ananassa HOM05D005477 ORTHO05D006721 3.6e-36 154.5 82 89.0
RcHm_v2.0_Chr5g0021751 Rosa chinensis HOM05D005477 ORTHO05D006721 1.1e-35 152.9 82 87.8
CSS0024293 Camellia sinensis var. sinensis HOM05D005477 ORTHO05D006721 1.8e-35 152.1 80 90.0
CiPaw.09G140100 Carya illinoinensis HOM05D005477 ORTHO05D006721 2.4e-35 151.8 82 90.2
PSO675G9273 Papaver somniferum HOM05D005477 ORTHO05D006721 2.4e-35 151.8 82 87.8
Dinv01135 Davidia involucrata HOM05D005477 ORTHO05D006721 4.0e-35 151.0 82 87.8
CANSAT35G0922 Cannabis sativa HOM05D005477 ORTHO05D006721 6.9e-35 150.2 82 87.8
HanXRQChr14g0439061 Helianthus annuus HOM05D005477 ORTHO05D006721 6.9e-35 150.2 82 87.8
Nn7g38416 Nelumbo nucifera HOM05D005477 ORTHO05D006721 9.0e-35 149.8 80 88.8
HanXRQChr09g0257861 Helianthus annuus HOM05D005477 ORTHO05D006721 1.5e-34 149.1 80 87.5
Os07g0498300 Oryza sativa ssp. japonica HOM05D005477 ORTHO05D006721 1.5e-34 149.1 82 85.4
TAR624G0209 Trochodendron aralioides HOM05D005477 ORTHO05D006721 1.5e-34 149.1 82 85.4
Manes.03G072100 Manihot esculenta HOM05D005477 ORTHO05D006721 2.0e-34 148.7 82 87.8
PGR042G1348 Punica granatum HOM05D005477 ORTHO05D006721 2.0e-34 148.7 80 88.8
MELO3C006999.2 Cucumis melo HOM05D005477 ORTHO05D006721 3.4e-34 147.9 82 86.6
Ciclev10017510m.g Citrus clementina HOM05D005477 ORTHO05D006721 4.4e-34 147.5 82 86.6
Lsat_1_v5_gn_2_59701 Lactuca sativa HOM05D005477 ORTHO05D006721 4.4e-34 147.5 75 93.3
Thecc.02G001600 Theobroma cacao HOM05D005477 ORTHO05D006721 4.4e-34 147.5 82 86.6
Eucgr.E04324 Eucalyptus grandis HOM05D005477 ORTHO05D006721 5.8e-34 147.1 82 85.4
Thhalv10026700m.g Eutrema salsugineum HOM05D005477 ORTHO05D006721 5.8e-34 147.1 82 85.4
Atru.chr10.245 Acer truncatum HOM05D005477 ORTHO05D006721 7.6e-34 146.7 80 87.5
Potri.003G156301 Populus trichocarpa HOM05D005477 ORTHO05D006721 1.3e-33 146.0 82 86.6
BcaB03g11659 Brassica carinata HOM05D005477 ORTHO05D006721 1.7e-33 145.6 82 84.1
BcaC01g00657 Brassica carinata HOM05D005477 ORTHO05D006721 1.7e-33 145.6 82 84.1
BcaC06g30645 Brassica carinata HOM05D005477 ORTHO05D006721 1.7e-33 145.6 82 84.1
CARHR226980 Cardamine hirsuta HOM05D005477 ORTHO05D006721 1.7e-33 145.6 82 84.1
Ca_18217_v3 Cicer arietinum L. HOM05D005477 ORTHO05D006721 1.7e-33 145.6 82 85.4
COL.COLO4_25033 Corchorus olitorius HOM05D005477 ORTHO05D006721 1.7e-33 145.6 82 84.1
Psat7g087320 Pisum sativum HOM05D005477 ORTHO05D006721 1.7e-33 145.6 80 87.5
Ah.15g091860 Amaranthus hybridus HOM05D005477 ORTHO05D006721 2.2e-33 145.2 80 86.2
arahy.Tifrunner.gnm1.ann1.3VSL80 Arachis hypogaea HOM05D005477 ORTHO05D006721 2.2e-33 145.2 82 84.1
arahy.Tifrunner.gnm1.ann1.Z3SLP7 Arachis hypogaea HOM05D005477 ORTHO05D006721 2.2e-33 145.2 82 84.1
Potri.001G074901 Populus trichocarpa HOM05D005477 ORTHO05D006721 2.2e-33 145.2 82 84.1
Sp7g18580 Schrenkiella parvula HOM05D005477 ORTHO05D006721 2.2e-33 145.2 82 84.1
Aqoxy1G01389 Aquilegia oxysepala HOM05D005477 ORTHO05D006721 2.9e-33 144.8 84 84.5
AT4G20150 Arabidopsis thaliana HOM05D005477 ORTHO05D006721 2.9e-33 144.8 82 84.1
THA.LOC104811905 Tarenaya hassleriana HOM05D005477 ORTHO05D006721 2.9e-33 144.8 82 82.9
vmacro03568 Vaccinium macrocarpon HOM05D005477 ORTHO05D006721 3.8e-33 144.4 75 90.7
AL7G33670 Arabidopsis lyrata HOM05D005477 ORTHO05D006721 4.9e-33 144.1 82 84.1
Carub.0007s2098 Capsella rubella HOM05D005477 ORTHO05D006721 4.9e-33 144.1 82 84.1
BcaNung03709 Brassica carinata HOM05D005477 ORTHO05D006721 6.4e-33 143.7 82 82.9
THA.LOC104812922 Tarenaya hassleriana HOM05D005477 ORTHO05D006721 8.4e-33 143.3 82 82.9
Gohir.A12G050600 Gossypium hirsutum HOM05D005477 ORTHO05D006721 1.1e-32 142.9 82 84.1
Gohir.A12G050700 Gossypium hirsutum HOM05D005477 ORTHO05D006721 1.1e-32 142.9 82 84.1
Gohir.D12G048900 Gossypium hirsutum HOM05D005477 ORTHO05D006721 1.1e-32 142.9 82 84.1
Gohir.D12G049000 Gossypium hirsutum HOM05D005477 ORTHO05D006721 1.1e-32 142.9 82 84.1
Gorai.008G051800 Gossypium raimondii HOM05D005477 ORTHO05D006721 1.1e-32 142.9 82 84.1
Ah.08g212300 Amaranthus hybridus HOM05D003310 ORTHO05D006721 1.4e-32 142.5 77 87.0
BcaNung03492 Brassica carinata HOM05D005477 ORTHO05D006721 1.4e-32 142.5 82 82.9
Sed0007385 Sechium edule HOM05D005477 ORTHO05D006721 1.4e-32 142.5 82 82.9
Hund08547 Selenicereus undatus HOM05D005477 ORTHO05D006721 1.4e-32 142.5 80 86.2
Gorai.008G051900 Gossypium raimondii HOM05D005477 ORTHO05D006721 1.9e-32 142.1 82 82.9
Cfa001157 Carpinus fangiana HOM05D005477 ORTHO05D006721 2.4e-32 141.7 75 92.0
Haze_05194 Corylus avellana HOM05D005477 ORTHO05D006721 2.4e-32 141.7 75 92.0
Glyma.05G134900 Glycine max HOM05D005477 ORTHO05D006721 2.4e-32 141.7 80 83.8
Glyma.08G090100 Glycine max HOM05D005477 ORTHO05D006721 2.4e-32 141.7 80 83.8
QL11p010970 Quercus lobata HOM05D005477 ORTHO05D006721 2.4e-32 141.7 75 90.7
Sabra03G0113300 Salix brachista HOM05D005477 ORTHO05D006721 2.4e-32 141.7 78 85.9
TPR.G27391 Trifolium pratense HOM05D005477 ORTHO05D006721 2.4e-32 141.7 82 82.9
A03p52320 Brassica napus HOM05D005477 ORTHO05D006721 3.2e-32 141.4 75 86.7
ECA238G4156 Erigeron canadensis HOM05D005477 ORTHO05D006721 3.2e-32 141.4 82 80.5
MBI18_g35539_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 3.2e-32 141.4 80 82.5
Aa31LG6G2560 Aethionema arabicum HOM05D005477 ORTHO05D006721 4.2e-32 141.0 75 86.7
Cpa.g.sc2054.1 Carica papaya HOM05D005477 ORTHO05D006721 5.4e-32 140.6 75 88.0
ClCG01G025920 Citrullus lanatus HOM05D005477 ORTHO05D006721 9.3e-32 139.8 75 88.0
CsaV3_6G053130 Cucumis sativus L. HOM05D005477 ORTHO05D006721 9.3e-32 139.8 75 88.0
A08p14650 Brassica napus HOM05D005477 ORTHO05D006721 1.2e-31 139.4 75 85.3
C03p82800 Brassica napus HOM05D005477 ORTHO05D006721 1.2e-31 139.4 75 85.3
BolC3t20562H Brassica oleracea HOM05D005477 ORTHO05D006721 1.2e-31 139.4 75 85.3
BolC7t45576H Brassica oleracea HOM05D005477 ORTHO05D006721 1.2e-31 139.4 75 85.3
BraA03t14308Z Brassica rapa HOM05D005477 ORTHO05D006721 1.2e-31 139.4 75 85.3
BraA08t33453Z Brassica rapa HOM05D005477 ORTHO05D006721 1.2e-31 139.4 75 85.3
CiPaw.10G107900 Carya illinoinensis HOM05D005477 ORTHO05D006721 1.2e-31 139.4 75 89.3
Lj4g0025411 Lotus japonicus HOM05D005477 ORTHO05D006721 1.6e-31 139.0 82 80.5
Phvul.002G187200 Phaseolus vulgaris HOM05D005477 ORTHO05D006721 2.7e-31 138.3 82 81.7
Sabra01G0054000 Salix brachista HOM05D005477 ORTHO05D006721 2.7e-31 138.3 77 83.1
HPP92_026455 Vanilla planifolia HOM05D005477 ORTHO05D006721 2.7e-31 138.3 75 82.7
Sc24g0002840 Simmondsia chinensis HOM05D005477 ORTHO05D006721 3.5e-31 137.9 76 85.5
Sopen10g001220 Solanum pennellii HOM05D005477 ORTHO05D006721 3.5e-31 137.9 82 76.8
EL10Ac7g17253 Beta vulgaris HOM05D005477 ORTHO05D006721 4.6e-31 137.5 76 86.8
A01p11900 Brassica napus HOM05D005477 ORTHO05D006721 4.6e-31 137.5 75 84.0
BraA01t01132Z Brassica rapa HOM05D005477 ORTHO05D006721 4.6e-31 137.5 75 84.0
Zm00001eb105410 Zea mays HOM05D005477 ORTHO05D006721 6.0e-31 137.1 76 84.2
C07p50750 Brassica napus HOM05D005477 ORTHO05D006721 1.0e-30 136.3 75 84.0
AUR62040995 Chenopodium quinoa HOM05D005477 ORTHO05D006721 1.0e-30 136.3 79 82.3
Peaxi162Scf00203g01320 Petunia axillaris HOM05D005477 ORTHO05D006721 1.0e-30 136.3 82 74.4
Medtr4g094792 Medicago truncatula HOM05D005477 ORTHO05D006721 1.3e-30 136.0 76 84.2
Zm00001eb321910 Zea mays HOM05D005477 ORTHO05D006721 1.3e-30 136.0 76 82.9
MSTRG.16378 Avicennia marina HOM05D005477 ORTHO05D006721 1.7e-30 135.6 82 75.6
AUR62042809 Chenopodium quinoa HOM05D005477 ORTHO05D006721 1.7e-30 135.6 78 83.3
Lalb_Chr07g0188151 Lupinus albus HOM05D005477 ORTHO05D006721 1.7e-30 135.6 82 80.5
CDE12G0557 Ceratophyllum demersum HOM05D005477 ORTHO05D006721 2.3e-30 135.2 82 78.0
unitig_748.g7487 Utricularia gibba HOM05D005477 ORTHO05D006721 5.1e-30 134.0 80 77.5
Cc09_g04680 Coffea canephora HOM05D005477 ORTHO05D006721 8.7e-30 133.3 82 73.2
Lalb_Chr13g0293041 Lupinus albus HOM05D005477 ORTHO05D006721 8.7e-30 133.3 82 75.6
MBI18_g18219_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 8.7e-30 133.3 75 82.7
Nitab4.5_0001299g0020 Nicotiana tabacum HOM05D005477 ORTHO05D006721 8.7e-30 133.3 80 73.8
Oeu046914.1 Olea europaea HOM05D005477 ORTHO05D006721 1.5e-29 132.5 75 80.0
MBI18_g21701_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 1.9e-29 132.1 75 82.7
Oeu005613.1 Olea europaea HOM05D005477 ORTHO05D006721 1.9e-29 132.1 75 80.0
CiPaw.06G130100 Carya illinoinensis HOM05D005477 ORTHO05D006721 5.6e-29 130.6 75 84.0
ATR0763G104 Amborella trichopoda HOM05D005477 ORTHO05D006721 9.6e-29 129.8 76 77.6
PSO675G4749 Papaver somniferum HOM05D005477 ORTHO05D006721 9.6e-29 129.8 82 79.3
Peaxi162Scf00700g00728 Petunia axillaris HOM05D005477 ORTHO05D006721 1.3e-28 129.4 81 70.4
Solyc10g005230.3 Solanum lycopersicum HOM05D005477 ORTHO05D006721 1.3e-28 129.4 76 77.6
Nitab4.5_0004786g0020 Nicotiana tabacum HOM05D005477 ORTHO05D006721 1.6e-28 129.0 75 76.0
PGSC0003DMG400011262 Solanum tuberosum HOM05D005477 ORTHO05D006721 1.6e-28 129.0 77 74.0
DCAR_001258 Daucus carota HOM05D005477 ORTHO05D006721 2.1e-28 128.6 75 78.7
DCAR_004357 Daucus carota HOM05D005477 ORTHO05D006721 2.1e-28 128.6 77 77.9
Duzib132G0617 Durio zibethinus HOM05D005477 ORTHO05D006721 2.1e-28 128.6 82 73.2
SHI16868 Sapria himalayana HOM05D005477 ORTHO05D006721 3.6e-28 127.9 77 77.9
GSVIVG01010508001 Vitis vinifera HOM05D005477 ORTHO05D006721 4.8e-28 127.5 82 70.7
Migut.M02030 Erythranthe guttata HOM05D005477 ORTHO05D006721 8.1e-28 126.7 80 76.2
DCAR_016635 Daucus carota HOM05D005477 ORTHO05D006721 4.5e-26 120.9 75 76.0
CAN.G105.21 Capsicum annuum HOM05D005477 ORTHO05D006721 1.3e-25 119.4 75 69.3
TWI38G0021 Tripterygium wilfordii HOM05D005477 ORTHO05D006721 1.3e-25 119.4 80 67.5
TWI15G0858 Tripterygium wilfordii HOM05D005477 ORTHO05D006721 7.9e-23 110.2 80 58.8
Lalb_Chr07g0188141 Lupinus albus HOM05D005477 ORTHO05D006721 6.7e-22 107.1 76 63.2
Pp3c14_13800 Physcomitrium patens HOM05D005477 ORTHO05D006721 2.4e-19 98.6 76 56.6
Pp3c1_24730 Physcomitrium patens HOM05D005477 ORTHO05D006721 9.0e-19 96.7 80 53.8
Mapoly0053s0096 Marchantia polymorpha HOM05D005477 ORTHO05D006721 7.6e-18 93.6 76 52.6
CBR_g39209 Chara braunii HOM05D005477 ORTHO05D006721 1.3e-17 92.8 73 53.4
Oeu039133.1 Olea europaea HOM05D005477 ORTHO05D006721 2.5e-16 88.6 50 74.0
AagrBONN_evm.TU.Sc2ySwM_362.2068 Anthoceros agrestis HOM05D005477 ORTHO05D006721 4.6e-15 84.3 75 45.3
MBI15_g47666_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 1.6e-12 75.9 69 60.9
SMO134G0137 Selaginella moellendorffii HOM05D005477 ORTHO05D006721 2.8e-12 75.1 77 44.2
GSVIVG01010076001 Vitis vinifera HOM05D005477 ORTHO05D006721 4.8e-12 74.3 51 64.7
MBI15_g35018_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 4.0e-11 71.2 40 82.5
MCO10G264 Micromonas commoda HOM05D005477 ORTHO05D006721 5.3e-11 70.9 69 43.5
Aa31LG9G8470 Aethionema arabicum HOM05D005477 ORTHO05D006721 1.7e-09 65.9 37 83.8
Nitab4.5_0000217g0090 Nicotiana tabacum HOM05D005477 ORTHO05D006721 8.7e-06 53.5 40 57.5


User provided reference genes

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