Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G044400 Prunus persica HOM05D007576 ORTHO05D009576 0.0e+00 1338.6 712 100.0
MD10G1296200 Malus domestica HOM05D007576 ORTHO05D009576 2.0e-287 992.3 744 72.2
MD05G1314800 Malus domestica HOM05D007576 ORTHO05D009576 1.5e-279 966.1 744 71.4
RcHm_v2.0_Chr5g0008071 Rosa chinensis HOM05D007576 ORTHO05D009576 4.9e-262 907.9 745 66.4
FAN11G2000 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.8e-256 889.4 743 66.2
FAN25G3788 Fragaria x ananassa HOM05D007576 ORTHO05D009576 2.3e-256 889.0 743 66.2
FAN16G1901 Fragaria x ananassa HOM05D007576 ORTHO05D009576 4.0e-256 888.3 743 66.4
FvH4_3g04910 Fragaria vesca HOM05D007576 ORTHO05D009576 2.2e-254 882.5 739 66.4
FAN21G0504 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.4e-253 879.8 743 65.8
Cfa000420 Carpinus fangiana HOM05D007576 ORTHO05D009576 6.4e-230 801.2 746 61.0
CiPaw.09G057800 Carya illinoinensis HOM05D007576 ORTHO05D009576 3.1e-208 729.2 746 56.6
QL05p039732 Quercus lobata HOM05D007576 ORTHO05D009576 1.5e-207 726.9 747 55.8
Manes.17G043700 Manihot esculenta HOM05D007576 ORTHO05D009576 3.7e-201 705.7 747 53.7
Duzib192G1068 Durio zibethinus HOM05D007576 ORTHO05D009576 6.7e-195 684.9 748 52.3
Potri.011G050600 Populus trichocarpa HOM05D007576 ORTHO05D009576 8.2e-193 677.9 754 53.8
Sabra11G0034500 Salix brachista HOM05D007576 ORTHO05D009576 9.1e-192 674.5 751 52.6
Ciclev10014397m.g Citrus clementina HOM05D007576 ORTHO05D009576 4.2e-189 665.6 742 52.6
Dinv07540 Davidia involucrata HOM05D007576 ORTHO05D009576 4.2e-189 665.6 756 52.2
Thecc.06G190300 Theobroma cacao HOM05D007576 ORTHO05D009576 4.2e-189 665.6 752 52.0
COL.COLO4_31497 Corchorus olitorius HOM05D007576 ORTHO05D009576 2.6e-186 656.4 761 51.1
CSS0005805 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 9.7e-186 654.4 755 51.5
Haze_06496 Corylus avellana HOM05D007576 ORTHO05D009576 2.4e-184 649.8 654 57.6
CANSAT35G0220 Cannabis sativa HOM05D007576 ORTHO05D009576 1.6e-183 647.1 752 53.2
RhsimUnG0044800 Rhododendron simsii HOM05D007576 ORTHO05D009576 2.1e-180 636.7 748 50.3
Cpa.g.sc1598.2 Carica papaya HOM05D007576 ORTHO05D009576 3.1e-176 622.9 722 52.6
Gohir.A06G126300 Gossypium hirsutum HOM05D007576 ORTHO05D009576 9.1e-176 621.3 749 48.9
Gorai.010G153000 Gossypium raimondii HOM05D007576 ORTHO05D009576 7.7e-175 618.2 747 48.7
Phvul.003G161900 Phaseolus vulgaris HOM05D007576 ORTHO05D009576 2.9e-174 616.3 732 50.1
Gohir.D06G131100 Gossypium hirsutum HOM05D007576 ORTHO05D009576 6.5e-174 615.1 747 48.6
arahy.Tifrunner.gnm1.ann1.TJT9YV Arachis hypogaea HOM05D007576 ORTHO05D009576 1.2e-172 610.9 725 50.5
TWI38G1553 Tripterygium wilfordii HOM05D007576 ORTHO05D009576 2.1e-172 610.1 747 49.5
Glyma.05G009500 Glycine max HOM05D007576 ORTHO05D009576 1.4e-171 607.4 735 50.3
arahy.Tifrunner.gnm1.ann1.TJX0PA Arachis hypogaea HOM05D007576 ORTHO05D009576 8.8e-171 604.7 711 51.1
VMungo1215G0476 Vigna mungo HOM05D007576 ORTHO05D009576 1.8e-168 597.0 718 49.4
MELO3C007295.2 Cucumis melo HOM05D007576 ORTHO05D009576 1.2e-167 594.3 735 48.3
Glyma.17G117500 Glycine max HOM05D007576 ORTHO05D009576 1.6e-167 594.0 726 49.7
CsaV3_6G050020 Cucumis sativus L. HOM05D007576 ORTHO05D009576 2.3e-166 590.1 735 48.2
ClCG01G022850 Citrullus lanatus HOM05D007576 ORTHO05D009576 2.1e-164 583.6 735 48.4
Lalb_Chr13g0302021 Lupinus albus HOM05D007576 ORTHO05D009576 6.8e-163 578.6 740 46.6
Ca_21702_v3 Cicer arietinum L. HOM05D007576 ORTHO05D009576 8.3e-161 571.6 743 47.6
Medtr4g113740 Medicago truncatula HOM05D007576 ORTHO05D009576 3.5e-159 566.2 728 48.1
Eucgr.E03347 Eucalyptus grandis HOM05D007576 ORTHO05D009576 1.1e-157 561.2 742 46.6
Sed0017500 Sechium edule HOM05D007576 ORTHO05D009576 1.6e-156 557.4 688 46.8
Psat4g041840 Pisum sativum HOM05D007576 ORTHO05D009576 2.3e-155 553.5 723 48.0
Lj4g0015142 Lotus japonicus HOM05D007576 ORTHO05D009576 5.2e-155 552.4 726 48.1
Lj1A1207T83 Lonicera japonica HOM05D007576 ORTHO05D009576 2.4e-152 543.5 742 46.0
Nn1g06600 Nelumbo nucifera HOM05D007576 ORTHO05D009576 1.7e-150 537.3 785 45.2
Sc05g0007790 Simmondsia chinensis HOM05D007576 ORTHO05D009576 4.3e-141 506.1 779 43.3
Nitab4.5_0001357g0010 Nicotiana tabacum HOM05D007576 ORTHO05D009576 1.2e-138 498.0 757 43.6
Nitab4.5_0009493g0040 Nicotiana tabacum HOM05D007576 ORTHO05D009576 3.4e-138 496.5 757 42.5
Hund21235 Selenicereus undatus HOM05D007576 ORTHO05D009576 3.4e-138 496.5 703 45.4
AUR62014798 Chenopodium quinoa HOM05D007576 ORTHO05D009576 9.9e-138 495.0 742 43.1
PGR042G0577 Punica granatum HOM05D007576 ORTHO05D009576 1.7e-137 494.2 747 43.8
AUR62016989 Chenopodium quinoa HOM05D007576 ORTHO05D009576 1.9e-136 490.7 745 42.4
Aqoxy1G02531 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 3.2e-136 490.0 788 42.6
Aqoxy1G02534 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 3.2e-136 490.0 788 42.6
PGSC0003DMG400022439 Solanum tuberosum HOM05D007576 ORTHO05D009576 5.1e-134 482.6 752 42.0
CAN.G1164.10 Capsicum annuum HOM05D007576 ORTHO05D009576 1.5e-133 481.1 750 42.4
Sopen02g023320 Solanum pennellii HOM05D007576 ORTHO05D009576 7.3e-133 478.8 753 42.1
EL10Ac8g20358 Beta vulgaris HOM05D007576 ORTHO05D009576 1.2e-132 478.0 715 42.4
Cc02_g13130 Coffea canephora HOM05D007576 ORTHO05D009576 8.9e-131 471.9 746 40.2
Ah.14g089350 Amaranthus hybridus HOM05D007576 ORTHO05D009576 5.8e-130 469.2 726 42.6
DCAR_008044 Daucus carota HOM05D007576 ORTHO05D009576 1.7e-129 467.6 654 45.9
PSO675G5421 Papaver somniferum HOM05D007576 ORTHO05D009576 4.9e-129 466.1 785 40.5
MSTRG.15916 Avicennia marina HOM05D007576 ORTHO05D009576 2.3e-126 457.2 760 39.6
SalBow8G3709 Salvia bowleyana HOM05D007576 ORTHO05D009576 8.7e-126 455.3 750 39.9
Lsat_1_v5_gn_4_52541 Lactuca sativa HOM05D007576 ORTHO05D009576 3.2e-120 436.8 744 41.9
SGA_v2.0_scaffold7G03972 Striga asiatica HOM05D007576 ORTHO05D009576 2.1e-119 434.1 773 40.8
Atru.chr10.1919 Acer truncatum HOM05D007576 ORTHO05D009576 5.1e-118 429.5 544 49.3
MBI18_g17005_MAGBIO Magnolia biondii HOM05D007576 ORTHO05D009576 9.6e-117 425.2 832 38.8
Peaxi162Scf00947g00422 Petunia axillaris HOM05D007576 ORTHO05D009576 9.6e-117 425.2 607 44.8
Migut.M01192 Erythranthe guttata HOM05D007576 ORTHO05D009576 4.8e-116 422.9 739 40.3
HanXRQChr16g0518181 Helianthus annuus HOM05D007576 ORTHO05D009576 5.1e-110 402.9 748 39.2
CSS0010553 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 6.2e-108 396.0 724 39.8
ECA234G2395 Erigeron canadensis HOM05D007576 ORTHO05D009576 8.1e-108 395.6 742 38.1
GSVIVG01002036001 Vitis vinifera HOM05D007576 ORTHO05D009576 8.4e-105 385.6 301 68.8
TPR.G10703 Trifolium pratense HOM05D007576 ORTHO05D009576 1.1e-101 375.2 331 61.9
PSO541G6317 Papaver somniferum HOM05D007576 ORTHO05D009576 1.5e-93 348.2 487 45.2
HPP92_014806 Vanilla planifolia HOM05D007576 ORTHO05D009576 8.5e-89 332.4 773 34.4
ATR0680G038 Amborella trichopoda HOM05D007576 ORTHO05D009576 1.0e-86 325.5 273 60.4
Oeu038219.1 Olea europaea HOM05D007576 ORTHO05D009576 3.7e-84 317.0 244 68.0
CDE01G0107 Ceratophyllum demersum HOM05D007576 ORTHO05D009576 2.6e-82 310.8 621 36.1
Ciclev10008775m.g Citrus clementina HOM05D007576 ORTHO05D009576 2.5e-80 304.3 385 49.6
Os06g0731700 Oryza sativa ssp. japonica HOM05D007576 ORTHO05D009576 4.7e-79 300.1 268 57.1
Zm00001eb229030 Zea mays HOM05D007576 ORTHO05D009576 2.2e-76 291.2 270 56.3
Pp3c11_25570 Physcomitrium patens HOM05D007576 ORTHO05D009576 3.2e-56 224.2 266 47.7
Mapoly0181s0007 Marchantia polymorpha HOM05D007576 ORTHO05D009576 6.1e-55 219.9 252 46.4
Atru.chr10.1928 Acer truncatum HOM05D007576 ORTHO05D009576 1.2e-47 195.7 519 32.8
Duzib235G0673 Durio zibethinus HOM05D007576 ORTHO05D009576 4.1e-43 180.6 158 62.0
Ciclev10009735m.g Citrus clementina HOM05D007576 ORTHO05D009576 3.3e-40 171.0 157 59.2
Lj2g0021670 Lotus japonicus HOM05D007576 ORTHO05D009576 4.1e-35 154.1 195 46.7
Solyc02g078470.4 Solanum lycopersicum HOM05D007576 ORTHO05D009576 3.1e-30 137.9 103 66.0
CBR_g49326 Chara braunii HOM05D007576 ORTHO05D000002 8.6e-25 119.8 186 40.3
MELO3C003884.2 Cucumis melo HOM05D007576 ORTHO05D009576 4.9e-20 104.0 151 43.0
ECA247G2871 Erigeron canadensis HOM05D000526 ORTHO05D000956 4.6e-18 97.4 80 61.2
Atru.chr10.1920 Acer truncatum HOM05D007576 ORTHO05D009576 7.8e-18 96.7 84 58.3
SEGI_32076 Sequoiadendron giganteum HOM05D007576 ORTHO05D009576 9.6e-16 89.7 84 50.0
Cre13.g589167 Chlamydomonas reinhardtii HOM05D007576 ORTHO05D009576 1.0e-09 69.7 238 26.5
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 3.6e-07 61.2 188 27.7
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 8.1e-07 60.1 141 29.8


User provided reference genes

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