Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 5.6e-240 833.9 446 100.0
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 1.1e-166 590.5 379 84.7
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 1.8e-153 546.6 379 79.9
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 3.9e-148 528.9 384 77.9
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 2.6e-136 489.6 386 73.6
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 5.4e-134 481.9 452 65.5
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 9.9e-120 434.5 393 67.2
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 2.2e-119 433.3 398 64.6
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 2.9e-119 433.0 396 66.4
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 2.7e-117 426.4 403 65.0
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 7.8e-117 424.9 401 64.1
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 1.9e-115 420.2 393 65.1
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 4.3e-115 419.1 405 63.7
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 1.6e-114 417.2 402 64.2
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 8.1e-114 414.8 399 62.9
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 2.4e-113 413.3 391 63.7
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.5e-109 399.4 395 62.5
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 8.7e-108 394.8 401 59.1
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 4.3e-107 392.5 347 65.7
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 3.7e-106 389.4 394 61.2
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 4.8e-106 389.0 393 61.6
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 3.1e-105 386.3 334 69.8
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 1.3e-103 380.9 406 59.4
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 3.8e-103 379.4 394 60.4
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 6.4e-103 378.6 396 60.4
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 6.4e-103 378.6 400 59.0
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 1.1e-102 377.9 407 59.0
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.2e-101 374.4 423 56.5
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 1.6e-101 374.0 343 66.5
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.1e-101 373.6 396 58.8
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 2.7e-101 373.2 390 59.7
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 6.0e-101 372.1 390 59.2
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 7.9e-101 371.7 394 59.6
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.0e-100 369.8 386 60.4
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 8.7e-100 368.2 418 58.1
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.9e-99 367.1 349 63.3
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 5.7e-99 365.5 349 63.6
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 7.4e-99 365.2 391 58.8
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 9.6e-99 364.8 386 59.6
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 4.0e-97 359.4 349 63.0
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 9.0e-97 358.2 387 58.1
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 2.6e-96 356.7 408 57.1
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 4.5e-96 355.9 403 55.8
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 7.6e-96 355.1 389 58.6
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 1.3e-95 354.4 406 56.2
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 2.2e-95 353.6 365 60.5
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 2.2e-95 353.6 411 56.9
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 2.9e-95 353.2 402 56.5
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 1.1e-94 351.3 401 56.6
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.4e-94 350.9 365 60.5
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.5e-94 350.1 365 60.0
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 1.3e-92 344.4 383 58.2
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 1.5e-91 340.9 411 56.2
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 3.3e-91 339.7 399 57.9
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 2.2e-90 337.0 419 55.1
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 4.8e-90 335.9 385 56.6
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 5.3e-89 332.4 343 60.1
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 1.5e-88 330.9 402 55.2
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 8.5e-87 325.1 377 58.9
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 4.6e-85 319.3 399 53.6
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 2.0e-83 313.9 393 53.4
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.5e-83 313.5 398 53.0
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 7.4e-83 312.0 338 58.3
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 1.3e-82 311.2 393 52.9
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 1.3e-82 311.2 416 51.7
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 2.8e-82 310.1 437 51.0
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 4.8e-82 309.3 396 55.8
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 8.2e-82 308.5 437 51.0
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 9.1e-81 305.1 391 54.5
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.0e-80 303.9 318 61.6
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 1.3e-79 301.2 367 53.4
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 3.8e-79 299.7 397 53.9
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 1.6e-77 294.3 398 50.5
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 2.7e-77 293.5 376 52.9
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 1.0e-76 291.6 410 51.7
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 6.7e-76 288.9 384 51.6
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 8.8e-76 288.5 383 49.1
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 6.3e-74 282.3 395 50.6
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 8.2e-74 282.0 389 50.4
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 1.1e-73 281.6 396 50.0
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 4.1e-73 279.6 397 50.4
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 5.3e-73 279.3 371 53.1
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 7.0e-73 278.9 360 52.8
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 2.0e-72 277.3 399 48.6
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 1.7e-71 274.2 392 49.5
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 2.9e-71 273.5 398 50.0
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 3.8e-71 273.1 399 48.1
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 6.5e-71 272.3 391 51.4
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 2.5e-70 270.4 351 54.4
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 1.6e-69 267.7 390 50.3
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 2.1e-69 267.3 383 48.3
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 2.7e-69 266.9 378 48.9
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 4.7e-69 266.2 408 45.8
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 6.1e-69 265.8 255 66.3
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.0e-68 265.0 331 53.2
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 1.4e-65 254.6 411 47.2
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 2.4e-65 253.8 302 57.6
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 2.4e-65 253.8 390 50.0
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 3.1e-65 253.4 385 50.1
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 5.3e-65 252.7 368 51.6
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 5.3e-65 252.7 330 54.2
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 1.6e-64 251.1 363 51.5
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 2.0e-64 250.8 368 51.4
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 2.0e-64 250.8 318 55.0
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 2.6e-64 250.4 364 51.6
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 2.6e-64 250.4 364 51.6
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 2.6e-64 250.4 383 50.1
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 5.9e-64 249.2 364 51.1
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 1.3e-63 248.1 324 55.6
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 2.5e-62 243.8 276 59.8
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 2.5e-62 243.8 276 59.8
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 4.2e-62 243.0 358 48.0
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 3.0e-60 236.9 403 43.9
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 7.5e-59 232.3 398 44.5
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.4e-57 228.0 326 48.5
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 1.6e-56 224.6 321 50.2
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 8.5e-55 218.8 426 40.6
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 1.2e-53 214.9 298 50.7
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 1.5e-51 208.0 185 61.1
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 1.4e-49 201.4 267 50.9
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 1.1e-46 191.8 380 40.8
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 9.5e-46 188.7 217 54.8
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 1.4e-44 184.9 353 41.1
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 6.3e-42 176.0 233 54.5
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 9.2e-41 172.2 309 43.0
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 1.2e-35 155.2 386 37.3
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.8e-35 152.9 213 53.1
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.8e-35 152.9 213 53.1
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 5.8e-35 152.9 364 36.3
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.0e-32 142.9 206 51.5
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.3e-31 141.0 343 37.9
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 6.6e-31 139.4 98 76.5
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 5.6e-30 136.3 118 68.6
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-29 135.2 127 60.6
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 1.6e-29 134.8 118 68.6
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 5.8e-27 126.3 181 53.6
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 1.7e-26 124.8 243 42.0
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 3.2e-25 120.6 312 37.2
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-21 108.6 195 45.1
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-21 108.6 195 45.1
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.6e-21 107.1 195 44.6
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.7e-21 106.7 195 44.6
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.4e-20 105.1 195 44.1
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.8e-20 104.8 195 44.6
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 4.4e-19 100.1 106 63.2
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 1.3e-15 88.6 65 72.3
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.9e-15 87.0 195 40.0
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 5.2e-12 76.6 138 48.6
SMO351G0434 Selaginella moellendorffii HOM05D025386 ORTHO05D005388 6.8e-12 76.3 166 35.5
Os05g0547100 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 3.4e-11 73.9 167 41.9
Sabra19G0093600 Salix brachista HOM05D000057 ORTHO05D005388 4.9e-10 70.1 84 57.1
Zm00001eb365900 Zea mays HOM05D004683 ORTHO05D005388 6.6e-07 59.7 148 33.8
FvH4_3g38640 Fragaria vesca HOM05D037407 ORTHO05D035386 1.9e-06 58.2 80 51.2
AagrBONN_evm.TU.Sc2ySwM_117.2428 Anthoceros agrestis HOM05D025386 ORTHO05D026614 9.6e-06 55.8 247 27.5


User provided reference genes

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