Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 7.2e-106 387.5 230 100.0
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 1.9e-29 133.7 247 51.4
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 6.9e-24 115.2 239 39.3
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 9.9e-23 111.3 228 38.6
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 9.9e-23 111.3 229 39.3
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 3.8e-22 109.4 237 38.4
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 7.1e-21 105.1 237 37.6
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 7.1e-21 105.1 234 37.6
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 9.3e-21 104.8 225 48.0
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 1.2e-20 104.4 225 36.9
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 2.1e-20 103.6 233 36.1
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 3.5e-20 102.8 228 37.7
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 3.5e-20 102.8 231 37.2
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 4.6e-20 102.4 232 36.2
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 6.0e-20 102.1 240 37.5
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 6.0e-20 102.1 230 35.2
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 7.8e-20 101.7 228 36.0
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 1.3e-19 100.9 233 36.1
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 1.3e-19 100.9 228 36.8
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 1.7e-19 100.5 234 32.9
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 2.3e-19 100.1 232 34.1
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 2.3e-19 100.1 232 35.3
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 3.9e-19 99.4 228 34.2
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 5.1e-19 99.0 236 34.3
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 8.7e-19 98.2 239 35.1
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.1e-18 97.8 228 35.1
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 2.5e-18 96.7 241 41.9
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 4.3e-18 95.9 226 35.0
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 4.3e-18 95.9 249 32.5
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 9.6e-18 94.7 225 34.7
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 1.6e-17 94.0 242 34.3
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 1.6e-17 94.0 225 34.2
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 2.1e-17 93.6 231 39.4
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 2.1e-17 93.6 228 33.3
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 3.6e-17 92.8 223 39.0
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 3.6e-17 92.8 212 38.7
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 3.6e-17 92.8 225 34.7
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 3.6e-17 92.8 233 34.8
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 6.2e-17 92.0 231 33.3
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 8.1e-17 91.7 228 35.5
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 1.1e-16 91.3 228 32.9
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 1.1e-16 91.3 229 33.2
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 1.1e-16 91.3 231 33.8
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 1.8e-16 90.5 237 35.4
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 2.4e-16 90.1 234 35.9
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 3.1e-16 89.7 227 33.0
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 3.1e-16 89.7 233 34.3
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 3.1e-16 89.7 225 33.8
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 3.1e-16 89.7 225 43.6
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 4.0e-16 89.4 228 32.5
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 4.0e-16 89.4 225 34.2
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 4.0e-16 89.4 233 35.2
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 5.3e-16 89.0 225 33.3
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 5.3e-16 89.0 228 36.8
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 9.0e-16 88.2 223 36.8
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 1.2e-15 87.8 223 34.1
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 2.0e-15 87.0 232 33.2
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 3.4e-15 86.3 225 33.3
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 3.4e-15 86.3 223 32.7
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 4.5e-15 85.9 223 33.6
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 4.5e-15 85.9 225 32.0
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 5.8e-15 85.5 223 32.3
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 5.8e-15 85.5 223 37.2
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 5.8e-15 85.5 222 33.3
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 7.6e-15 85.1 233 33.9
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 9.9e-15 84.7 229 33.2
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 1.3e-14 84.3 233 30.9
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 1.3e-14 84.3 223 32.7
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 1.3e-14 84.3 223 33.2
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 1.7e-14 84.0 223 37.7
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 1.7e-14 84.0 227 33.5
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 3.8e-14 82.8 230 33.0
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 3.8e-14 82.8 223 31.8
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 4.9e-14 82.4 223 32.7
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 4.9e-14 82.4 226 33.6
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 4.9e-14 82.4 223 32.7
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 4.9e-14 82.4 223 32.7
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 6.4e-14 82.0 226 31.0
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 6.4e-14 82.0 224 30.8
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 8.4e-14 81.6 231 32.5
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 1.1e-13 81.3 224 33.0
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 1.4e-13 80.9 226 32.3
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 2.4e-13 80.1 223 32.3
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 2.4e-13 80.1 224 34.4
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 3.2e-13 79.7 224 32.6
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 4.2e-13 79.3 228 32.9
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 4.2e-13 79.3 223 32.3
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 4.2e-13 79.3 212 32.1
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 7.1e-13 78.6 223 32.3
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 7.1e-13 78.6 228 33.3
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 9.3e-13 78.2 231 30.7
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 9.3e-13 78.2 225 32.4
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 1.2e-12 77.8 245 31.0
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 1.2e-12 77.8 228 30.3
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 1.6e-12 77.4 224 32.1
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 1.6e-12 77.4 224 32.1
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 1.6e-12 77.4 224 32.1
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.6e-12 77.4 209 32.5
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 1.6e-12 77.4 217 32.3
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 1.6e-12 77.4 240 37.5
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 2.1e-12 77.0 233 32.2
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 2.7e-12 76.6 228 30.7
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 3.5e-12 76.3 225 32.0
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 3.5e-12 76.3 234 31.2
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 3.5e-12 76.3 227 33.5
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 4.6e-12 75.9 228 32.5
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 6.0e-12 75.5 222 30.6
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 7.9e-12 75.1 223 31.8
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 7.9e-12 75.1 225 30.2
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 2.3e-11 73.6 210 31.0
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 3.9e-11 72.8 227 37.0
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 3.9e-11 72.8 229 30.1
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 5.1e-11 72.4 229 33.2
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 1.5e-10 70.9 226 31.0
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 2.5e-10 70.1 223 30.0
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 3.3e-10 69.7 227 29.5
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 3.3e-10 69.7 234 29.9
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 4.3e-10 69.3 230 32.2
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 5.6e-10 68.9 225 30.7
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 7.4e-10 68.6 52 65.4
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 2.8e-09 66.6 225 26.7
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 2.8e-09 66.6 232 30.6
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 2.8e-09 66.6 228 28.9
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 3.7e-09 66.2 87 47.1
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 4.8e-09 65.9 50 66.0
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 6.2e-09 65.5 229 31.0
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 6.2e-09 65.5 229 31.0
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 8.1e-09 65.1 53 60.4
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 8.1e-09 65.1 53 60.4
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 8.1e-09 65.1 45 66.7
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 8.1e-09 65.1 225 34.7
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 1.4e-08 64.3 231 30.3
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 1.8e-08 63.9 227 31.3
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.8e-08 63.9 229 30.6
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 1.8e-08 63.9 223 35.4
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 2.4e-08 63.5 224 29.5
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 3.1e-08 63.2 110 38.2
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 3.1e-08 63.2 100 42.0
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 6.9e-08 62.0 226 27.9
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 9.0e-08 61.6 211 29.9
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 9.0e-08 61.6 211 29.9
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 9.0e-08 61.6 45 64.4
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 1.2e-07 61.2 47 59.6
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 2.0e-07 60.5 223 28.3
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 2.0e-07 60.5 62 50.0
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 2.6e-07 60.1 199 32.7
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 2.6e-07 60.1 224 30.4
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 2.6e-07 60.1 224 30.4
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 2.6e-07 60.1 215 31.6
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 2.6e-07 60.1 174 34.5
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.5e-07 59.3 226 28.3
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 5.8e-07 58.9 63 52.4
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 7.6e-07 58.5 225 28.0
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.7e-06 57.4 225 28.0
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 1.7e-06 57.4 98 38.8
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 2.9e-06 56.6 224 29.5
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 4.9e-06 55.8 230 27.4
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 4.9e-06 55.8 242 26.9
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 6.4e-06 55.5 232 25.0
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 6.4e-06 55.5 115 36.5
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 8.4e-06 55.1 121 38.8


User provided reference genes

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