Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G304500 Prunus persica HOM05D005888 ORTHO05D007791 9.0e-298 1026.2 521 100.0
MD09G1012500 Malus domestica HOM05D005888 ORTHO05D007791 3.8e-264 914.4 523 87.4
RcHm_v2.0_Chr2g0175381 Rosa chinensis HOM05D005888 ORTHO05D007791 7.7e-257 890.2 522 86.2
QL02p071659 Quercus lobata HOM05D005888 ORTHO05D007791 5.0e-248 860.9 521 81.4
FvH4_6g53250 Fragaria vesca HOM05D005888 ORTHO05D007791 1.1e-247 859.8 522 83.0
CiPaw.03G054300 Carya illinoinensis HOM05D005888 ORTHO05D007791 1.9e-239 832.4 526 80.6
Potri.001G331900 Populus trichocarpa HOM05D005888 ORTHO05D007791 5.9e-233 810.8 521 76.6
TWI36G1634 Tripterygium wilfordii HOM05D005888 ORTHO05D007791 1.0e-232 810.1 522 77.6
Manes.15G159600 Manihot esculenta HOM05D005888 ORTHO05D007791 1.5e-231 806.2 515 78.4
Ciclev10014957m.g Citrus clementina HOM05D005888 ORTHO05D007791 2.5e-231 805.4 519 76.7
FAN05G3931 Fragaria x ananassa HOM05D005888 ORTHO05D007791 2.5e-231 805.4 524 79.0
Dinv33348 Davidia involucrata HOM05D005888 ORTHO05D007791 1.2e-230 803.1 508 79.7
Gorai.011G091800 Gossypium raimondii HOM05D005888 ORTHO05D007791 3.4e-228 795.0 522 77.6
Nn4g22357 Nelumbo nucifera HOM05D005888 ORTHO05D007791 1.4e-226 789.6 506 75.7
FAN02G1540 Fragaria x ananassa HOM05D005888 ORTHO05D007791 7.0e-226 787.3 542 74.2
Phvul.001G094800 Phaseolus vulgaris HOM05D005888 ORTHO05D007791 7.0e-226 787.3 516 76.4
Thecc.04G034400 Theobroma cacao HOM05D005888 ORTHO05D007791 4.6e-225 784.6 528 73.9
Gohir.D10G084400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 6.0e-225 784.3 522 77.2
Actinidia05914 Actinidia chinensis HOM05D005888 ORTHO05D007791 1.0e-224 783.5 509 76.6
CANSAT64G1138 Cannabis sativa HOM05D005888 ORTHO05D007791 2.5e-223 778.9 532 74.2
Glyma.16G057700 Glycine max HOM05D005888 ORTHO05D007791 4.3e-223 778.1 511 75.1
Atru.chr6.2554 Acer truncatum HOM05D005888 ORTHO05D007791 1.6e-222 776.2 512 77.9
Atru.chr6.2546 Acer truncatum HOM05D005888 ORTHO05D007791 2.1e-222 775.8 512 77.7
CsaV3_3G027150 Cucumis sativus L. HOM05D005888 ORTHO05D007791 4.7e-222 774.6 515 73.0
GSVIVG01033109001 Vitis vinifera HOM05D005888 ORTHO05D007791 6.2e-222 774.2 478 78.2
MELO3C014874.2 Cucumis melo HOM05D005888 ORTHO05D007791 8.0e-222 773.9 503 74.6
Gohir.A10G159400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 2.6e-220 768.8 522 75.7
Eucgr.J02331 Eucalyptus grandis HOM05D005888 ORTHO05D007791 4.4e-220 768.1 514 73.9
arahy.Tifrunner.gnm1.ann1.BEVL6N Arachis hypogaea HOM05D005888 ORTHO05D007791 5.8e-220 767.7 524 74.2
THA.LOC104823976 Tarenaya hassleriana HOM05D005888 ORTHO05D007791 7.5e-220 767.3 503 76.9
Aqoxy5G03414 Aquilegia oxysepala HOM05D005888 ORTHO05D007791 2.2e-219 765.8 465 78.1
Cpa.g.sc171.27 Carica papaya HOM05D005888 ORTHO05D007791 2.2e-219 765.8 521 75.2
Lalb_Chr22g0360441 Lupinus albus HOM05D005888 ORTHO05D007791 2.2e-219 765.8 473 77.8
Lju41C52T2 Lonicera japonica HOM05D005888 ORTHO05D007791 6.4e-219 764.2 507 75.0
Lj1g0026523 Lotus japonicus HOM05D005888 ORTHO05D007791 1.9e-218 762.7 512 74.0
arahy.Tifrunner.gnm1.ann1.269ICV Arachis hypogaea HOM05D005888 ORTHO05D007791 2.4e-218 762.3 526 75.5
FAN14G3555 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.2e-217 760.0 519 75.7
Sc03g0006610 Simmondsia chinensis HOM05D005888 ORTHO05D007791 2.1e-217 759.2 508 75.4
Sed0023439 Sechium edule HOM05D005888 ORTHO05D007791 3.9e-216 755.0 509 74.3
Sabra16G0212900 Salix brachista HOM05D005888 ORTHO05D007791 2.5e-215 752.3 529 72.4
ClCG05G013410 Citrullus lanatus HOM05D005888 ORTHO05D007791 4.3e-215 751.5 524 71.8
Hma1.2p1_0279F.1_g112650 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 3.6e-214 748.4 438 81.1
Cfa007240 Carpinus fangiana HOM05D005888 ORTHO05D007791 4.7e-214 748.0 521 73.9
Rhsim10G0007200 Rhododendron simsii HOM05D005888 ORTHO05D007791 8.1e-214 747.3 542 70.5
Solyc03g005010.4 Solanum lycopersicum HOM05D005888 ORTHO05D007791 8.1e-214 747.3 518 71.4
PGR083G0577 Punica granatum HOM05D005888 ORTHO05D007791 1.1e-213 746.9 518 71.0
Sopen03g001020 Solanum pennellii HOM05D005888 ORTHO05D007791 1.1e-213 746.9 518 71.4
Medtr7g029350 Medicago truncatula HOM05D005888 ORTHO05D007791 5.2e-213 744.6 475 75.8
AL5G16294 Arabidopsis lyrata HOM05D005888 ORTHO05D007791 1.6e-209 733.0 503 70.6
MSTRG.15566 Avicennia marina HOM05D005888 ORTHO05D007791 2.1e-209 732.6 471 73.2
SalBow7G4553 Salvia bowleyana HOM05D005888 ORTHO05D007791 6.0e-209 731.1 471 73.0
ECA238G1812 Erigeron canadensis HOM05D005888 ORTHO05D001226 1.0e-208 730.3 456 76.1
AT3G27180 Arabidopsis thaliana HOM05D005888 ORTHO05D007791 1.7e-208 729.6 470 73.8
CARHR148380 Cardamine hirsuta HOM05D005888 ORTHO05D007791 1.7e-208 729.6 504 70.2
Carub.0005s0545 Capsella rubella HOM05D005888 ORTHO05D007791 2.3e-208 729.2 507 69.8
Lsat_1_v5_gn_2_94140 Lactuca sativa HOM05D005888 ORTHO05D007791 1.1e-207 726.9 498 70.7
A06p41440 Brassica napus HOM05D005888 ORTHO05D007791 1.9e-207 726.1 508 70.1
C07p36200 Brassica napus HOM05D005888 ORTHO05D007791 1.9e-207 726.1 512 69.5
BolC7t44136H Brassica oleracea HOM05D005888 ORTHO05D007791 1.9e-207 726.1 508 69.9
PSO782G2046 Papaver somniferum HOM05D005888 ORTHO05D007791 7.3e-207 724.2 461 75.3
Cc07_g00720 Coffea canephora HOM05D005888 ORTHO05D007791 9.5e-207 723.8 499 69.7
BraA06t27070Z Brassica rapa HOM05D005888 ORTHO05D007791 3.1e-205 718.8 467 73.4
PSO063G1934 Papaver somniferum HOM05D005888 ORTHO05D007791 4.0e-205 718.4 454 75.6
Aa31LG2G5450 Aethionema arabicum HOM05D005888 ORTHO05D007791 2.0e-204 716.1 503 70.6
DCAR_021782 Daucus carota HOM05D005888 ORTHO05D007791 2.0e-204 716.1 447 75.2
Sp2g16300 Schrenkiella parvula HOM05D005888 ORTHO05D007791 2.6e-204 715.7 505 68.9
Nitab4.5_0000559g0440 Nicotiana tabacum HOM05D005888 ORTHO05D007791 3.8e-203 711.8 486 70.4
TPR.G38314 Trifolium pratense HOM05D005888 ORTHO05D007791 3.8e-203 711.8 465 73.1
Thhalv10003965m.g Eutrema salsugineum HOM05D005888 ORTHO05D007791 2.4e-202 709.1 532 66.7
HanXRQChr14g0450691 Helianthus annuus HOM05D005888 ORTHO05D007791 3.2e-202 708.8 460 74.6
PGSC0003DMG400013424 Solanum tuberosum HOM05D005888 ORTHO05D007791 4.2e-202 708.4 493 69.8
Migut.K01458 Erythranthe guttata HOM05D005888 ORTHO05D007791 2.1e-201 706.1 520 68.1
EL10Ac5g11325 Beta vulgaris HOM05D005888 ORTHO05D007791 6.0e-201 704.5 482 69.7
vmacro05950 Vaccinium macrocarpon HOM05D005888 ORTHO05D007791 3.6e-198 695.3 517 68.3
Oeu011755.2 Olea europaea HOM05D005888 ORTHO05D007791 4.9e-195 684.9 474 70.0
BcaC06g33851 Brassica carinata HOM05D005888 ORTHO05D007791 4.2e-194 681.8 503 66.6
ATR0561G016 Amborella trichopoda HOM05D005888 ORTHO05D007791 5.1e-192 674.9 474 67.9
Peaxi162Scf00700g00115 Petunia axillaris HOM05D005888 ORTHO05D007791 1.1e-189 667.2 452 71.9
COL.COLO4_17186 Corchorus olitorius HOM05D005888 ORTHO05D007791 3.4e-188 662.1 403 78.9
Psat3g164600 Pisum sativum HOM05D005888 ORTHO05D007791 9.3e-186 654.1 416 75.7
AUR62034780 Chenopodium quinoa HOM05D005888 ORTHO05D007791 6.0e-185 651.4 455 69.5
CDE05G3258 Ceratophyllum demersum HOM05D005888 ORTHO05D007791 1.1e-181 640.6 476 66.0
SGA_v2.0_scaffold47G17585 Striga asiatica HOM05D005888 ORTHO05D000781 1.4e-181 640.2 417 72.2
Duzib187G0894 Durio zibethinus HOM05D005888 ORTHO05D007791 1.6e-177 626.7 512 63.9
HPP92_006968 Vanilla planifolia HOM05D005888 ORTHO05D007791 1.6e-177 626.7 440 68.4
Zm00001eb364480 Zea mays HOM05D005888 ORTHO05D007791 3.5e-177 625.5 470 62.6
Nitab4.5_0005161g0030 Nicotiana tabacum HOM05D005888 ORTHO05D007791 1.4e-173 613.6 473 64.5
Haze_14860 Corylus avellana HOM05D005888 ORTHO05D007791 2.2e-171 606.3 524 65.5
FAN05G4989 Fragaria x ananassa HOM05D005888 ORTHO05D007791 2.2e-163 579.7 368 80.2
Pp3c10_19430 Physcomitrium patens HOM05D005888 ORTHO05D007791 3.7e-150 535.8 457 54.5
Mapoly0035s0136 Marchantia polymorpha HOM05D005888 ORTHO05D007791 1.2e-148 530.8 463 54.9
CAN.G1751.4 Capsicum annuum HOM05D005888 ORTHO05D007791 8.5e-147 524.6 339 74.9
TAR374G0091 Trochodendron aralioides HOM05D005888 ORTHO05D007791 2.1e-145 520.0 322 80.4
Hma1.2p1_0279F.1_g112640 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 3.9e-144 515.8 315 79.4
SMO364G0044 Selaginella moellendorffii HOM05D005888 ORTHO05D007791 3.5e-140 502.7 444 52.9
Ca_11801_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 1.3e-134 484.2 340 71.2
AUR62009505 Chenopodium quinoa HOM05D005888 ORTHO05D007791 1.5e-127 460.7 430 56.7
AagrBONN_evm.TU.Sc2ySwM_344.2002 Anthoceros agrestis HOM05D005888 ORTHO05D007791 5.7e-119 432.2 404 51.5
Actinidia36191 Actinidia chinensis HOM05D005888 ORTHO05D007791 6.3e-118 428.7 273 78.4
Os01g0920300 Oryza sativa ssp. japonica HOM05D005888 ORTHO05D007791 2.2e-110 403.7 309 61.8
CBR_g38076 Chara braunii HOM05D005888 ORTHO05D007791 1.4e-109 401.0 384 49.5
VMungo1383G0859 Vigna mungo HOM05D005888 ORTHO05D007791 1.4e-109 401.0 301 70.1
VMungo1383G0786 Vigna mungo HOM05D005888 ORTHO05D007791 1.0e-99 368.2 246 71.5
AUR62044347 Chenopodium quinoa HOM05D005888 ORTHO05D007791 3.6e-97 359.8 408 49.5
Atru.chr6.2542 Acer truncatum HOM05D005888 ORTHO05D007791 1.3e-91 341.3 289 61.2
Ah.11g046710 Amaranthus hybridus HOM05D005888 ORTHO05D007791 1.9e-85 320.9 515 39.2
BcaC06g31013 Brassica carinata HOM05D005888 ORTHO05D007791 1.7e-83 314.3 226 69.9
CSS0026485 Camellia sinensis var. sinensis HOM05D005888 ORTHO05D007791 3.6e-81 306.6 265 61.5
MCO16G034 Micromonas commoda HOM05D005888 ORTHO05D007791 4.3e-66 256.5 498 32.7
FAN09G0079 Fragaria x ananassa HOM05D000071 ORTHO05D007791 2.0e-63 247.7 127 83.5
Ca_27688_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 3.0e-43 180.6 138 62.3
PRCOL_00001844 Prasinoderma coloniale HOM05D005888 ORTHO05D007791 9.1e-40 169.1 450 31.3
Atru.chr6.2543 Acer truncatum HOM05D005888 ORTHO05D007791 9.1e-32 142.5 87 79.3
RcHm_v2.0_Chr7g0179331 Rosa chinensis HOM05D005888 ORTHO05D007791 4.5e-31 140.2 94 75.5
MD17G1013100 Malus domestica HOM05D005888 ORTHO05D007791 1.3e-30 138.7 108 66.7
Cre13.g578012 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 1.8e-24 118.2 378 26.7
GSVIVG01006690001 Vitis vinifera HOM05D005888 ORTHO05D007791 8.5e-22 109.4 90 61.1
Pp3s32_330 Physcomitrium patens HOM05D005216 ORTHO05D006453 1.1e-21 109.0 379 27.2
SEGI_20285 Sequoiadendron giganteum HOM05D005888 ORTHO05D007791 4.7e-20 103.6 73 61.6
BcaNung06416 Brassica carinata HOM05D005888 ORTHO05D007791 1.3e-17 95.5 91 53.8
GSVIVG01033112001 Vitis vinifera HOM05D005888 ORTHO05D007791 1.7e-17 95.1 65 70.8
Cre13.g578201 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 2.8e-17 94.4 171 31.6
GSVIVG01006789001 Vitis vinifera HOM05D005888 ORTHO05D007791 3.0e-11 74.3 78 52.6
GSVIVG01033118001 Vitis vinifera HOM05D005888 ORTHO05D007791 4.0e-11 73.9 91 47.3
RcHm_v2.0_Chr7g0239971 Rosa chinensis HOM05D005888 ORTHO05D007791 1.2e-10 72.4 40 72.5
MCO09G155 Micromonas commoda HOM05D005216 ORTHO05D006453 1.3e-09 68.9 394 24.1
FAN18G4156 Fragaria x ananassa HOM05D005888 ORTHO05D045398 1.7e-09 68.6 37 75.7
arahy.Tifrunner.gnm1.ann1.3FLP3Q Arachis hypogaea HOM05D005888 ORTHO05D007791 2.9e-06 57.8 36 63.9
RcHm_v2.0_Chr3g0482901 Rosa chinensis HOM05D005888 ORTHO05D007791 8.6e-06 56.2 42 66.7


User provided reference genes

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