Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G241200 Prunus persica HOM05D002617 ORTHO05D009035 0.0e+00 1351.7 687 100.0
FvH4_6g45490 Fragaria vesca HOM05D002617 ORTHO05D009035 5.0e-296 1020.8 690 76.7
FAN05G4565 Fragaria x ananassa HOM05D002617 ORTHO05D009035 2.2e-291 1005.4 684 75.6
RcHm_v2.0_Chr2g0163431 Rosa chinensis HOM05D002617 ORTHO05D009035 1.5e-287 992.6 718 73.3
FAN14G1977 Fragaria x ananassa HOM05D002617 ORTHO05D009035 3.4e-252 875.2 687 70.0
QL02p053130 Quercus lobata HOM05D002617 ORTHO05D009035 4.4e-252 874.8 686 65.7
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 2.4e-250 869.0 690 65.5
TAR629G1601 Trochodendron aralioides HOM05D002617 ORTHO05D009035 8.6e-248 860.5 661 66.9
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 2.0e-244 849.4 670 65.2
Cfa007963 Carpinus fangiana HOM05D002617 ORTHO05D009035 1.8e-237 826.2 712 62.2
FAN09G3897 Fragaria x ananassa HOM05D002617 ORTHO05D009035 1.9e-231 806.2 683 64.0
TWI53G1449 Tripterygium wilfordii HOM05D002617 ORTHO05D009035 9.6e-231 803.9 684 60.2
Rhsim10G0064400 Rhododendron simsii HOM05D002617 ORTHO05D009035 2.1e-230 802.7 700 60.0
CiPaw.09G147400 Carya illinoinensis HOM05D002617 ORTHO05D009035 2.2e-227 792.7 605 67.9
Nn3g17671 Nelumbo nucifera HOM05D002617 ORTHO05D009035 2.4e-226 789.3 685 60.1
Actinidia36305 Actinidia chinensis HOM05D002617 ORTHO05D009035 7.3e-223 777.7 700 60.1
Thecc.04G140600 Theobroma cacao HOM05D002617 ORTHO05D009035 1.6e-222 776.5 698 58.5
Sabra04G0077100 Salix brachista HOM05D002617 ORTHO05D009035 1.8e-221 773.1 683 58.4
Hma1.2p1_0136F.1_g062000 Hydrangea macrophylla HOM05D002617 ORTHO05D009035 4.9e-219 765.0 597 66.2
COL.COLO4_16208 Corchorus olitorius HOM05D002617 ORTHO05D009035 4.6e-217 758.4 709 58.0
Duzib151G0578 Durio zibethinus HOM05D002617 ORTHO05D009035 4.6e-217 758.4 676 60.4
MD09G1082500 Malus domestica HOM05D002617 ORTHO05D009035 5.3e-213 745.0 472 79.2
CSS0020455 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D009035 9.0e-213 744.2 698 57.3
PGR042G2862 Punica granatum HOM05D002617 ORTHO05D009035 7.6e-212 741.1 694 57.8
DCAR_011250 Daucus carota HOM05D002617 ORTHO05D009035 1.3e-211 740.3 728 55.5
Gohir.A10G140200 Gossypium hirsutum HOM05D002617 ORTHO05D009035 1.9e-210 736.5 681 59.0
Medtr6g016985 Medicago truncatula HOM05D002617 ORTHO05D009035 4.2e-210 735.3 605 59.7
Cc07_g05000 Coffea canephora HOM05D002617 ORTHO05D009035 3.9e-208 728.8 666 58.3
Psat1g062120 Pisum sativum HOM05D002617 ORTHO05D009035 1.5e-207 726.9 641 58.2
Lj2g0019105 Lotus japonicus HOM05D002617 ORTHO05D009035 1.9e-207 726.5 595 61.3
Lj4A130G15 Lonicera japonica HOM05D002617 ORTHO05D009035 2.8e-206 722.6 673 59.1
Gohir.D10G126600 Gossypium hirsutum HOM05D002617 ORTHO05D009035 1.8e-205 719.9 679 57.1
Phvul.005G010600 Phaseolus vulgaris HOM05D002617 ORTHO05D009035 1.8e-205 719.9 606 60.9
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 1.2e-201 707.2 513 68.6
Oeu043862.1 Olea europaea HOM05D002617 ORTHO05D009035 2.1e-201 706.4 626 58.0
Peaxi162Scf00479g00211 Petunia axillaris HOM05D002617 ORTHO05D009035 2.3e-200 703.0 577 60.1
Aqoxy3G00430 Aquilegia oxysepala HOM05D002617 ORTHO05D009035 3.0e-200 702.6 634 57.1
Gorai.011G139500 Gossypium raimondii HOM05D002617 ORTHO05D009035 1.6e-198 696.8 679 56.1
Glyma.13G047800 Glycine max HOM05D002617 ORTHO05D009035 6.9e-197 691.4 521 65.6
AUR62008950 Chenopodium quinoa HOM05D002617 ORTHO05D009035 2.9e-195 686.0 665 54.4
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 1.4e-194 683.7 498 68.3
PSO832G3224 Papaver somniferum HOM05D002617 ORTHO05D009035 7.9e-193 677.9 631 55.0
arahy.Tifrunner.gnm1.ann1.7SH6PF Arachis hypogaea HOM05D002617 ORTHO05D009035 9.7e-191 671.0 622 57.1
PSO478G1567 Papaver somniferum HOM05D002617 ORTHO05D009035 1.3e-190 670.6 659 54.0
arahy.Tifrunner.gnm1.ann1.37DWZ9 Arachis hypogaea HOM05D002617 ORTHO05D009035 1.0e-187 661.0 624 56.1
MBI16_g23736_MAGBIO Magnolia biondii HOM05D002617 ORTHO05D009035 1.7e-187 660.2 665 51.6
HPP92_020267 Vanilla planifolia HOM05D002617 ORTHO05D009035 8.5e-187 657.9 691 50.1
Sopen03g009540 Solanum pennellii HOM05D002617 ORTHO05D009035 2.1e-185 653.3 622 56.4
Haze_14108 Corylus avellana HOM05D002617 ORTHO05D009035 4.7e-185 652.1 567 61.0
Nitab4.5_0000612g0170 Nicotiana tabacum HOM05D002617 ORTHO05D009035 1.7e-182 643.7 670 53.9
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 1.0e-179 634.4 660 53.6
Ca_14082_v3 Cicer arietinum L. HOM05D002617 ORTHO05D009035 2.9e-179 632.9 508 62.4
Sc11g0008110 Simmondsia chinensis HOM05D002617 ORTHO05D009035 4.2e-178 629.0 502 62.7
TPR.G9672 Trifolium pratense HOM05D002617 ORTHO05D009035 1.2e-177 627.5 447 65.5
Nitab4.5_0003461g0060 Nicotiana tabacum HOM05D002617 ORTHO05D009035 4.7e-177 625.5 728 49.9
Manes.02G065900 Manihot esculenta HOM05D002617 ORTHO05D009035 5.2e-176 622.1 483 65.6
Cpa.g.sc179.39 Carica papaya HOM05D002617 ORTHO05D009035 9.7e-175 617.8 709 51.5
Eucgr.J01458 Eucalyptus grandis HOM05D002617 ORTHO05D009035 1.7e-174 617.1 698 49.6
EL10Ac2g04621 Beta vulgaris HOM05D002617 ORTHO05D009035 1.1e-173 614.4 555 55.0
AT5G16020 Arabidopsis thaliana HOM05D002617 ORTHO05D009035 9.4e-170 601.3 559 54.2
Potri.004G104500 Populus trichocarpa HOM05D002617 ORTHO05D009035 1.2e-167 594.3 534 58.1
AL6G26890 Arabidopsis lyrata HOM05D002617 ORTHO05D009035 7.5e-167 591.7 591 52.1
CARHR197300 Cardamine hirsuta HOM05D002617 ORTHO05D009035 3.7e-166 589.3 590 50.7
Lsat_1_v5_gn_2_86600 Lactuca sativa HOM05D002617 ORTHO05D009035 1.8e-165 587.0 629 51.4
Carub.0006s1420 Capsella rubella HOM05D002617 ORTHO05D009035 5.4e-165 585.5 632 48.1
Atru.chr8.789 Acer truncatum HOM05D002617 ORTHO05D009035 2.7e-164 583.2 418 66.5
Ah.06g191010 Amaranthus hybridus HOM05D002617 ORTHO05D009035 4.5e-164 582.4 493 58.6
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 4.5e-164 582.4 553 57.3
Thhalv10015867m.g Eutrema salsugineum HOM05D002617 ORTHO05D009035 8.5e-163 578.2 588 50.5
Glyma.14G157500 Glycine max HOM05D002617 ORTHO05D009035 3.2e-162 576.2 423 66.4
Ah.06g191000 Amaranthus hybridus HOM05D002617 ORTHO05D009035 4.7e-161 572.4 493 58.0
vmacro05580 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 1.4e-160 570.9 413 65.9
A10p23040 Brassica napus HOM05D002617 ORTHO05D009035 1.5e-159 567.4 580 51.2
BraA10t44373Z Brassica rapa HOM05D002617 ORTHO05D009035 1.5e-159 567.4 580 51.2
BcaB08g36879 Brassica carinata HOM05D002617 ORTHO05D009035 2.2e-158 563.5 566 50.5
THA.LOC104827464 Tarenaya hassleriana HOM05D002617 ORTHO05D009035 4.9e-158 562.4 486 55.8
C09p61030 Brassica napus HOM05D002617 ORTHO05D009035 2.0e-156 557.0 580 50.9
BolC9t58948H Brassica oleracea HOM05D002617 ORTHO05D009035 5.9e-156 555.4 580 50.9
CiPaw.09G147200 Carya illinoinensis HOM05D002617 ORTHO05D009035 2.9e-155 553.1 413 66.6
Zm00001eb161540 Zea mays HOM05D002617 ORTHO05D009035 4.2e-154 549.3 617 46.7
HanXRQChr14g0452391 Helianthus annuus HOM05D002617 ORTHO05D009035 3.0e-152 543.1 610 50.2
ECA238G3370 Erigeron canadensis HOM05D002617 ORTHO05D009035 1.6e-148 530.8 511 55.4
Aa31LG11G13590 Aethionema arabicum HOM05D002617 ORTHO05D009035 1.9e-146 523.9 615 46.0
AUR62014551 Chenopodium quinoa HOM05D002617 ORTHO05D009035 4.7e-145 519.2 498 52.8
PSO013G0088 Papaver somniferum HOM05D002617 ORTHO05D009035 8.9e-144 515.0 565 51.0
FAN02G3888 Fragaria x ananassa HOM05D002617 ORTHO05D009035 2.2e-142 510.4 320 77.8
SHI30168 Sapria himalayana HOM05D002617 ORTHO05D009035 2.6e-135 486.9 590 48.1
ATR0820G227 Amborella trichopoda HOM05D002617 ORTHO05D009035 1.7e-134 484.2 607 43.2
BcaC04g18915 Brassica carinata HOM05D002617 ORTHO05D009035 1.4e-133 481.1 509 50.1
CANSAT56G0222 Cannabis sativa HOM05D002617 ORTHO05D009035 1.3e-131 474.6 345 66.1
Solyc03g045080.3 Solanum lycopersicum HOM05D002617 ORTHO05D009035 1.6e-129 467.6 405 61.5
SalBow1G3878 Salvia bowleyana HOM05D002617 ORTHO05D009035 7.6e-127 458.8 400 61.2
FAN02G3008 Fragaria x ananassa HOM05D002617 ORTHO05D009035 7.1e-125 452.2 384 66.7
Os01g0605400 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D009035 3.3e-122 443.4 608 42.9
PGSC0003DMG400018767 Solanum tuberosum HOM05D002617 ORTHO05D009035 6.6e-115 419.1 596 44.8
CAN.G153.15 Capsicum annuum HOM05D002617 ORTHO05D009035 2.5e-114 417.2 573 45.5
Lalb_Chr10g0092311 Lupinus albus HOM05D002617 ORTHO05D009035 5.6e-114 416.0 332 60.2
unitig_899.g15127 Utricularia gibba HOM05D002617 ORTHO05D009035 4.8e-113 412.9 575 43.0
CANSAT56G4171 Cannabis sativa HOM05D002617 ORTHO05D009035 1.3e-99 368.2 274 63.9
CDE06G1275 Ceratophyllum demersum HOM05D002617 ORTHO05D009035 1.1e-98 365.2 453 45.9
Actinidia18118 Actinidia chinensis HOM05D002617 ORTHO05D009035 2.6e-95 354.0 287 59.6
CANSAT56G3033 Cannabis sativa HOM05D002617 ORTHO05D009035 3.4e-87 327.0 403 52.4
CiPaw.09G170800 Carya illinoinensis HOM05D002617 ORTHO05D009035 1.6e-68 265.0 219 65.8
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 1.9e-53 214.9 220 58.2
MSTRG.23827 Avicennia marina HOM05D002617 ORTHO05D009035 4.7e-52 210.3 279 52.0
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 4.7e-52 210.3 215 58.1
arahy.Tifrunner.gnm1.ann1.3A0B2Z Arachis hypogaea HOM05D002617 ORTHO05D009035 6.1e-52 209.9 173 63.0
vmacro05579 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 1.5e-50 205.3 258 50.0
SMO116G0487 Selaginella moellendorffii HOM05D002617 ORTHO05D009035 5.6e-29 133.7 253 29.6
Lalb_Chr10g0092331 Lupinus albus HOM05D002617 ORTHO05D009035 1.7e-25 122.1 151 51.7
CBR_g48653 Chara braunii HOM05D001394 ORTHO05D001237 2.3e-22 111.7 265 25.7
Nn4g26093 Nelumbo nucifera HOM05D001650 ORTHO05D001592 2.3e-19 101.7 82 67.1
TAR705G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.4e-16 91.7 59 67.8
Lalb_Chr10g0092321 Lupinus albus HOM05D002617 ORTHO05D009035 9.2e-16 89.7 68 66.2
Lalb_Chr10g0092301 Lupinus albus HOM05D002617 ORTHO05D009035 1.9e-13 82.0 55 60.0
TAR629G1810 Trochodendron aralioides HOM05D004423 ORTHO05D005464 1.1e-08 66.2 42 69.0
TAR629G3114 Trochodendron aralioides HOM05D004526 ORTHO05D002794 1.2e-07 62.8 37 70.3


User provided reference genes

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