Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 2.1e-109 399.1 200 100.0
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 1.8e-81 306.2 198 78.3
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 1.3e-79 300.1 198 74.2
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 2.2e-74 282.7 194 70.6
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 4.1e-73 278.5 186 72.6
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 6.9e-73 277.7 198 68.7
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 2.6e-72 275.8 199 68.3
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 5.9e-72 274.6 196 68.9
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 2.9e-71 272.3 193 70.5
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.4e-70 270.0 198 66.2
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 1.9e-70 269.6 198 65.2
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 2.5e-70 269.2 199 65.8
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 9.4e-70 267.3 194 67.5
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 1.6e-69 266.5 192 66.7
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 2.1e-69 266.2 195 68.7
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 4.7e-69 265.0 196 68.4
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 1.0e-68 263.8 194 68.6
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.8e-68 263.1 199 65.8
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 2.3e-68 262.7 192 66.7
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 3.0e-68 262.3 194 65.5
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 3.0e-68 262.3 192 65.6
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 3.9e-68 261.9 195 67.7
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 8.8e-68 260.8 189 66.7
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 3.3e-67 258.8 192 65.6
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 2.2e-66 256.1 196 64.8
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 2.8e-66 255.8 193 65.8
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 3.7e-66 255.4 199 62.8
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 4.8e-66 255.0 192 63.5
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 8.2e-66 254.2 194 64.4
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 1.1e-65 253.8 198 61.6
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 3.1e-65 252.3 198 59.6
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 3.1e-65 252.3 194 63.9
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 4.1e-65 251.9 189 67.2
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 5.3e-65 251.5 198 59.6
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 5.3e-65 251.5 196 64.3
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 5.3e-65 251.5 197 64.0
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 5.3e-65 251.5 190 64.7
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.2e-64 250.4 194 63.9
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 1.2e-64 250.4 196 65.3
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.2e-64 250.4 198 62.1
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 1.6e-64 250.0 195 61.0
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 2.6e-64 249.2 194 62.9
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.6e-64 249.2 194 63.4
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 3.5e-64 248.8 198 60.6
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 4.5e-64 248.4 196 64.8
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 5.9e-64 248.1 194 62.9
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 5.9e-64 248.1 241 54.4
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 5.0e-63 245.0 199 60.8
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 6.5e-63 244.6 192 62.0
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 1.1e-62 243.8 197 61.4
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 1.9e-62 243.0 198 59.6
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 3.2e-62 242.3 199 58.8
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 5.5e-62 241.5 198 60.6
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 5.5e-62 241.5 195 61.0
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 5.5e-62 241.5 197 62.9
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 7.2e-62 241.1 194 61.3
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.6e-61 240.0 194 58.8
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 2.1e-61 239.6 198 58.6
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 2.7e-61 239.2 199 59.8
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 2.7e-61 239.2 198 57.1
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 2.7e-61 239.2 198 58.6
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 6.1e-61 238.0 194 58.8
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 8.0e-61 237.7 198 58.1
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 1.0e-60 237.3 193 60.1
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.8e-60 236.5 191 56.5
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 2.3e-60 236.1 193 58.0
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 3.0e-60 235.7 192 59.4
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 8.8e-60 234.2 191 58.6
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 1.2e-59 233.8 197 58.9
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.2e-59 233.8 197 57.4
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.5e-59 233.4 192 58.9
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 1.5e-59 233.4 197 57.9
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 2.6e-59 232.6 198 57.1
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.6e-59 232.6 187 58.3
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 3.3e-59 232.3 187 56.7
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 4.4e-59 231.9 181 65.7
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.3e-58 230.3 191 60.2
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 1.7e-58 229.9 191 57.6
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 2.2e-58 229.6 194 57.2
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 3.7e-58 228.8 191 58.6
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 3.7e-58 228.8 193 57.0
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 6.3e-58 228.0 191 58.6
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 1.1e-57 227.3 191 58.1
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 1.4e-57 226.9 196 59.2
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.4e-57 226.1 196 58.7
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.4e-57 226.1 187 56.7
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 3.1e-57 225.7 198 56.1
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 4.1e-57 225.3 187 55.6
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 5.3e-57 224.9 198 54.0
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 9.1e-57 224.2 194 56.7
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 1.6e-56 223.4 191 58.6
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 2.0e-56 223.0 198 54.0
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 3.5e-56 222.2 200 54.5
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 3.5e-56 222.2 191 57.1
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 7.7e-56 221.1 199 57.8
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 1.0e-55 220.7 195 56.9
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 1.3e-55 220.3 194 54.1
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 1.3e-55 220.3 195 56.9
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 1.3e-55 220.3 198 53.5
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 2.9e-55 219.2 199 56.3
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 6.5e-55 218.0 195 56.9
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 2.5e-54 216.1 188 58.0
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 7.2e-54 214.5 191 57.1
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.2e-53 213.8 195 54.4
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 1.6e-53 213.4 195 55.4
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 1.6e-53 213.4 195 54.9
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 3.6e-53 212.2 143 69.9
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 3.6e-53 212.2 196 55.6
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 4.7e-53 211.8 194 55.7
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 4.7e-53 211.8 199 55.8
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.4e-52 210.3 179 57.5
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 1.8e-52 209.9 195 52.8
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.8e-52 209.9 192 54.7
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 3.0e-52 209.1 195 53.3
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 5.2e-52 208.4 197 52.8
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 6.8e-52 208.0 197 54.8
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 6.8e-52 208.0 195 51.3
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 1.2e-51 207.2 190 53.7
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 1.2e-51 207.2 194 54.1
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 1.5e-51 206.8 144 65.3
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 2.0e-51 206.5 197 50.3
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 3.4e-51 205.7 173 62.4
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 4.4e-51 205.3 195 54.4
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 4.4e-51 205.3 192 51.6
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 9.8e-51 204.1 187 55.6
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 1.3e-50 203.8 190 50.5
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.3e-50 203.8 196 55.1
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 1.3e-50 203.8 194 53.6
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 2.2e-50 203.0 174 56.9
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 2.8e-50 202.6 190 50.0
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 1.8e-49 199.9 198 49.5
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 2.4e-49 199.5 190 50.0
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 3.1e-49 199.1 190 50.0
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 1.6e-48 196.8 195 50.3
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 2.0e-48 196.4 176 58.5
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.3e-47 193.7 167 59.9
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 1.7e-47 193.4 190 50.0
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 1.2e-45 187.2 188 51.1
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 4.7e-45 185.3 171 53.8
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.8e-44 183.3 189 47.6
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 2.3e-44 183.0 161 57.8
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 8.9e-44 181.0 164 53.7
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 8.9e-44 181.0 160 58.1
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 8.9e-44 181.0 190 48.4
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 2.6e-43 179.5 190 47.9
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 9.8e-43 177.6 188 50.0
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 3.7e-42 175.6 190 45.8
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.1e-41 172.6 133 63.2
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 4.1e-41 172.2 199 47.7
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.3e-39 167.2 192 45.3
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 6.6e-39 164.9 124 62.1
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 8.6e-39 164.5 194 44.3
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.1e-38 164.1 194 44.8
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.5e-38 162.9 157 51.6
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 9.5e-38 161.0 127 60.6
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 3.6e-37 159.1 192 42.2
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 6.1e-37 158.3 192 42.2
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.3e-36 156.4 184 46.2
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.5e-35 153.7 143 51.0
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.1e-33 147.5 192 42.7
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 4.6e-32 142.1 116 60.3
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 3.0e-31 139.4 192 41.7
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.6e-29 132.5 155 45.8
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 4.0e-28 129.0 202 40.1
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 4.0e-28 129.0 114 59.6
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 8.1e-21 104.8 108 53.7
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.7e-18 97.1 187 32.6
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 4.1e-17 92.4 206 31.6
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 5.4e-17 92.0 186 36.0
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 5.4e-17 92.0 191 31.9
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 2.3e-15 86.7 169 33.7
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 2.3e-15 86.7 164 35.4
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.6e-13 80.5 76 53.9
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 2.1e-13 80.1 198 30.3
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 4.7e-13 79.0 81 49.4
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 7.6e-11 71.6 162 31.5
FAN12G1760 Fragaria x ananassa HOM05D003838 ORTHO05D004444 8.4e-10 68.2 109 40.4
FvH4_4g02900 Fragaria vesca HOM05D003838 ORTHO05D004444 2.4e-09 66.6 89 46.1
FAN17G0163 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.9e-06 57.0 71 45.1


User provided reference genes

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