Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G114500 Prunus persica HOM05D005674 ORTHO05D007015 3.0e-39 167.2 84 100.0
MD07G1055100 Malus domestica HOM05D005674 ORTHO05D007015 5.0e-34 149.8 84 85.7
MD15G1427800 Malus domestica HOM05D005674 ORTHO05D007015 1.1e-33 148.7 84 84.5
Prupe.4G280300 Prunus persica HOM05D005674 ORTHO05D007015 4.8e-29 133.3 84 79.8
RcHm_v2.0_Chr2g0130841 Rosa chinensis HOM05D005674 ORTHO05D007015 3.6e-24 117.1 84 69.0
Cfa012588 Carpinus fangiana HOM05D005674 ORTHO05D007015 1.4e-23 115.2 84 66.7
FvH4_6g27690 Fragaria vesca HOM05D005674 ORTHO05D007015 2.3e-23 114.4 83 67.5
CsaV3_4G030900 Cucumis sativus L. HOM05D005674 ORTHO05D007015 1.2e-22 112.1 82 63.4
ClCG07G002660 Citrullus lanatus HOM05D005674 ORTHO05D007015 2.6e-22 110.9 82 62.2
Lalb_Chr01g0007701 Lupinus albus HOM05D005674 ORTHO05D007015 1.7e-21 108.2 84 64.3
QL08p042254 Quercus lobata HOM05D005674 ORTHO05D007015 2.2e-21 107.8 80 67.5
DCAR_018956 Daucus carota HOM05D005674 ORTHO05D007015 2.8e-21 107.5 81 59.3
CiPaw.03G192600 Carya illinoinensis HOM05D005674 ORTHO05D007015 3.7e-21 107.1 82 59.8
Actinidia00858 Actinidia chinensis HOM05D005674 ORTHO05D007015 6.3e-21 106.3 81 64.2
Duzib160G0406 Durio zibethinus HOM05D005674 ORTHO05D007015 8.3e-21 105.9 80 62.5
arahy.Tifrunner.gnm1.ann1.U482D3 Arachis hypogaea HOM05D005674 ORTHO05D007015 1.1e-20 105.5 82 62.2
CSS0001557 Camellia sinensis var. sinensis HOM05D005674 ORTHO05D007015 2.4e-20 104.4 79 64.6
Thecc.01G153300 Theobroma cacao HOM05D005674 ORTHO05D007015 2.4e-20 104.4 77 62.3
Sed0008626 Sechium edule HOM05D005674 ORTHO05D007015 3.1e-20 104.0 80 61.2
Solyc07g055220.3 Solanum lycopersicum HOM05D005674 ORTHO05D007015 9.2e-20 102.4 83 53.0
Sopen07g027000 Solanum pennellii HOM05D005674 ORTHO05D007015 9.2e-20 102.4 83 53.0
CAN.G1360.18 Capsicum annuum HOM05D005674 ORTHO05D007015 1.2e-19 102.1 83 53.0
arahy.Tifrunner.gnm1.ann1.MAGV51 Arachis hypogaea HOM05D005674 ORTHO05D007015 2.7e-19 100.9 82 58.5
Cpa.g.sc90.66 Carica papaya HOM05D005674 ORTHO05D007015 2.7e-19 100.9 79 64.6
Manes.09G079700 Manihot esculenta HOM05D005674 ORTHO05D007015 4.5e-19 100.1 80 56.2
Rhsim04G0075800 Rhododendron simsii HOM05D005674 ORTHO05D007015 5.9e-19 99.8 80 57.5
Dinv11955 Davidia involucrata HOM05D005674 ORTHO05D007015 7.8e-19 99.4 72 66.7
Psat0s443g0080 Pisum sativum HOM05D005674 ORTHO05D007015 7.8e-19 99.4 84 57.1
PGSC0003DMG401020415 Solanum tuberosum HOM05D005674 ORTHO05D007015 7.8e-19 99.4 82 52.4
VMungo1309G1849 Vigna mungo HOM05D005674 ORTHO05D007015 7.8e-19 99.4 80 57.5
arahy.Tifrunner.gnm1.ann1.I145LQ Arachis hypogaea HOM05D005674 ORTHO05D007015 1.7e-18 98.2 77 61.0
Dinv12372 Davidia involucrata HOM05D005674 ORTHO05D007015 1.7e-18 98.2 77 61.0
Sc04g0009990 Simmondsia chinensis HOM05D005674 ORTHO05D007015 1.7e-18 98.2 79 55.7
arahy.Tifrunner.gnm1.ann1.JH6JIJ Arachis hypogaea HOM05D005674 ORTHO05D007015 3.8e-18 97.1 78 60.3
Hma1.2p1_0067F.1_g036940 Hydrangea macrophylla HOM05D005674 ORTHO05D007015 3.8e-18 97.1 80 56.2
Phvul.009G126100 Phaseolus vulgaris HOM05D005674 ORTHO05D007015 5.0e-18 96.7 80 56.2
PGSC0003DMG400026386 Solanum tuberosum HOM05D005674 ORTHO05D007015 6.6e-18 96.3 82 54.9
Glyma.03G075500 Glycine max HOM05D005674 ORTHO05D007015 8.6e-18 95.9 79 55.7
Lj1P677T28 Lonicera japonica HOM05D005674 ORTHO05D007015 8.6e-18 95.9 80 53.8
Solyc02g086230.2 Solanum lycopersicum HOM05D005674 ORTHO05D007015 8.6e-18 95.9 82 53.7
Sopen02g030910 Solanum pennellii HOM05D005674 ORTHO05D007015 8.6e-18 95.9 82 53.7
TAR627G1060 Trochodendron aralioides HOM05D005674 ORTHO05D007015 8.6e-18 95.9 80 56.2
GSVIVG01024415001 Vitis vinifera HOM05D005674 ORTHO05D007015 8.6e-18 95.9 78 57.7
Ca_14577_v3 Cicer arietinum L. HOM05D005674 ORTHO05D007015 1.1e-17 95.5 84 57.1
Gohir.D10G254800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 1.1e-17 95.5 80 56.2
Gorai.011G295800 Gossypium raimondii HOM05D005674 ORTHO05D007015 1.5e-17 95.1 80 55.0
Gohir.A10G242800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 1.9e-17 94.7 79 55.7
Atru.chr7.2335 Acer truncatum HOM05D005674 ORTHO05D007015 2.5e-17 94.4 81 50.6
Gorai.013G183800 Gossypium raimondii HOM05D005674 ORTHO05D007015 2.5e-17 94.4 79 55.7
Ciclev10008244m.g Citrus clementina HOM05D005674 ORTHO05D007015 3.3e-17 94.0 81 55.6
Gohir.D13G161800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 5.6e-17 93.2 78 56.4
Sed0024338 Sechium edule HOM05D005674 ORTHO05D007015 5.6e-17 93.2 79 50.6
THA.LOC104806715 Tarenaya hassleriana HOM05D005674 ORTHO05D007015 9.5e-17 92.4 79 54.4
Medtr7g024140 Medicago truncatula HOM05D005674 ORTHO05D007015 1.2e-16 92.0 79 58.2
MELO3C033809.2 Cucumis melo HOM05D005674 ORTHO05D007015 2.8e-16 90.9 73 57.5
Manes.08G068200 Manihot esculenta HOM05D005674 ORTHO05D007015 2.8e-16 90.9 80 50.0
Hund00863 Selenicereus undatus HOM05D005674 ORTHO05D007015 2.8e-16 90.9 81 50.6
HanXRQChr13g0421081 Helianthus annuus HOM05D005674 ORTHO05D007015 3.6e-16 90.5 78 55.1
Lj3g0025693 Lotus japonicus HOM05D005674 ORTHO05D007015 4.7e-16 90.1 80 55.0
MBI15_g37633_MAGBIO Magnolia biondii HOM05D000146 ORTHO05D000178 4.7e-16 90.1 80 51.2
CANSAT54G2399 Cannabis sativa HOM05D005674 ORTHO05D007015 6.1e-16 89.7 76 55.3
Gohir.A13G157000 Gossypium hirsutum HOM05D005674 ORTHO05D007015 6.1e-16 89.7 82 51.2
PGR142G3640 Punica granatum HOM05D005674 ORTHO05D007015 6.1e-16 89.7 78 56.4
Sabra06G0005200 Salix brachista HOM05D005674 ORTHO05D007015 6.1e-16 89.7 79 51.9
CsaV3_5G005440 Cucumis sativus L. HOM05D005674 ORTHO05D007015 8.0e-16 89.4 73 56.2
ECA240G0139 Erigeron canadensis HOM05D005674 ORTHO05D007015 1.4e-15 88.6 81 48.1
CAN.G625.40 Capsicum annuum HOM05D005674 ORTHO05D007015 2.3e-15 87.8 78 51.3
Nitab4.5_0007923g0040 Nicotiana tabacum HOM05D005674 ORTHO05D007015 3.0e-15 87.4 82 47.6
Potri.006G006500 Populus trichocarpa HOM05D005674 ORTHO05D007015 3.0e-15 87.4 79 50.6
TWI12G0566 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 4.0e-15 87.0 58 69.0
Lsat_1_v5_gn_3_116841 Lactuca sativa HOM05D005674 ORTHO05D007015 6.8e-15 86.3 78 50.0
BcaC06g33618 Brassica carinata HOM05D005674 ORTHO05D007015 1.5e-14 85.1 81 49.4
Cc05_g08520 Coffea canephora HOM05D005674 ORTHO05D007015 2.0e-14 84.7 80 46.2
Thhalv10025145m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 2.6e-14 84.3 81 50.6
AL8G11670 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 3.4e-14 84.0 79 50.6
Sp2g11490 Schrenkiella parvula HOM05D005674 ORTHO05D007015 3.4e-14 84.0 57 70.2
Os02g0793200 Oryza sativa ssp. japonica HOM05D005674 ORTHO05D007015 5.8e-14 83.2 74 50.0
CARHR224650 Cardamine hirsuta HOM05D005674 ORTHO05D007015 7.5e-14 82.8 78 51.3
Nitab4.5_0000249g0090 Nicotiana tabacum HOM05D005674 ORTHO05D007015 7.5e-14 82.8 77 48.1
PSO063G6562 Papaver somniferum HOM05D005674 ORTHO05D007015 7.5e-14 82.8 81 50.6
PSO782G5737 Papaver somniferum HOM05D005674 ORTHO05D007015 7.5e-14 82.8 81 50.6
TPR.G14745 Trifolium pratense HOM05D005674 ORTHO05D007015 1.3e-13 82.0 81 50.6
AT5G46680 Arabidopsis thaliana HOM05D005674 ORTHO05D007015 1.7e-13 81.6 79 49.4
A02p30210 Brassica napus HOM05D005674 ORTHO05D007015 1.7e-13 81.6 79 50.6
TPR.G15161 Trifolium pratense HOM05D005674 ORTHO05D007015 1.7e-13 81.6 81 50.6
BcaC03g16871 Brassica carinata HOM05D005674 ORTHO05D007015 2.2e-13 81.3 79 50.6
BraA02t08037Z Brassica rapa HOM05D005674 ORTHO05D007015 2.2e-13 81.3 79 50.6
Carub.0008s0124 Capsella rubella HOM05D005674 ORTHO05D007015 3.7e-13 80.5 79 49.4
TWI31G0445 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 3.7e-13 80.5 81 49.4
Aa31LG10G3050 Aethionema arabicum HOM05D005674 ORTHO05D007015 6.4e-13 79.7 50 76.0
C02p47730 Brassica napus HOM05D005674 ORTHO05D007015 6.4e-13 79.7 79 49.4
BolC2t10809H Brassica oleracea HOM05D005674 ORTHO05D007015 6.4e-13 79.7 79 49.4
CARHR174820 Cardamine hirsuta HOM05D005674 ORTHO05D007015 6.4e-13 79.7 79 49.4
AUR62024049 Chenopodium quinoa HOM05D005674 ORTHO05D007015 6.4e-13 79.7 76 47.4
BolC7t45434H Brassica oleracea HOM05D005674 ORTHO05D007015 8.3e-13 79.3 78 47.4
AUR62040438 Chenopodium quinoa HOM05D005674 ORTHO05D007015 8.3e-13 79.3 75 48.0
SGA_v2.0_scaffold18G08491 Striga asiatica HOM05D005674 ORTHO05D007015 8.3e-13 79.3 78 43.6
Duzib116G0841 Durio zibethinus HOM05D005674 ORTHO05D007015 1.1e-12 79.0 56 66.1
Aa31LG6G670 Aethionema arabicum HOM05D005674 ORTHO05D007015 1.9e-12 78.2 49 75.5
Migut.F00129 Erythranthe guttata HOM05D005674 ORTHO05D007015 1.9e-12 78.2 80 43.8
Thhalv10001221m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 1.9e-12 78.2 57 66.7
Nn2g12528 Nelumbo nucifera HOM05D005674 ORTHO05D007015 4.1e-12 77.0 77 51.9
ATR1132G073 Amborella trichopoda HOM05D005674 ORTHO05D007015 5.4e-12 76.6 48 75.0
AL7G36590 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 5.4e-12 76.6 49 75.5
Carub.0007s2342 Capsella rubella HOM05D005674 ORTHO05D007015 5.4e-12 76.6 49 75.5
COL.COLO4_33609 Corchorus olitorius HOM05D005674 ORTHO05D007015 5.4e-12 76.6 50 72.0
Zm00001eb201010 Zea mays HOM05D005674 ORTHO05D007015 5.4e-12 76.6 71 46.5
Peaxi162Scf00888g00007 Petunia axillaris HOM05D005674 ORTHO05D007015 7.0e-12 76.3 82 41.5
Sp7g16190 Schrenkiella parvula HOM05D005674 ORTHO05D007015 9.2e-12 75.9 51 70.6
A03p50860 Brassica napus HOM05D005674 ORTHO05D007015 1.6e-11 75.1 51 68.6
C07p49250 Brassica napus HOM05D005674 ORTHO05D007015 1.6e-11 75.1 51 68.6
BraA03t14173Z Brassica rapa HOM05D005674 ORTHO05D007015 1.6e-11 75.1 51 68.6
Eucgr.K01145 Eucalyptus grandis HOM05D005674 ORTHO05D007015 2.0e-11 74.7 56 64.3
Nitab4.5_0000753g0050 Nicotiana tabacum HOM05D005674 ORTHO05D007015 4.6e-11 73.6 77 46.8
SalBow4G2062 Salvia bowleyana HOM05D005674 ORTHO05D007015 7.8e-11 72.8 52 67.3
CAN.G1360.17 Capsicum annuum HOM05D001556 ORTHO05D001505 1.7e-10 71.6 47 68.1
Aqoxy3G02039 Aquilegia oxysepala HOM05D005674 ORTHO05D007015 2.3e-10 71.2 79 41.8
TAR626G0412 Trochodendron aralioides HOM05D005674 ORTHO05D007015 3.0e-10 70.9 43 79.1
FAN23G2012 Fragaria x ananassa HOM05D005674 ORTHO05D007015 6.6e-10 69.7 48 70.8
Nitab4.5_0007990g0010 Nicotiana tabacum HOM05D005674 ORTHO05D007015 6.6e-10 69.7 73 47.9
HPP92_017208 Vanilla planifolia HOM05D005674 ORTHO05D007015 8.6e-10 69.3 66 47.0
BcaC06g31458 Brassica carinata HOM05D005674 ORTHO05D007015 1.2e-08 65.5 80 42.5
MELO3C033079.2 Cucumis melo HOM05D005674 ORTHO05D031076 3.1e-07 60.8 47 59.6
FAN02G2038 Fragaria x ananassa HOM05D003255 ORTHO05D006458 1.2e-06 58.9 46 60.9
MELO3C020050.2 Cucumis melo HOM05D005674 ORTHO05D007015 1.5e-06 58.5 50 52.0
CsaV3_5G013070 Cucumis sativus L. HOM05D005674 ORTHO05D007015 1.5e-06 58.5 47 53.2
CsaV3_UNG017130 Cucumis sativus L. HOM05D005674 ORTHO05D007015 1.5e-06 58.5 47 53.2


User provided reference genes

Program Settings