Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 1.0e-268 929.5 467 100.0
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 6.5e-239 830.5 464 88.4
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 4.7e-237 824.3 461 86.6
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 1.7e-234 815.8 464 87.1
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 1.0e-228 796.6 455 84.6
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 1.2e-224 783.1 460 84.8
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.9e-222 775.8 461 84.2
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.9e-222 775.8 461 84.2
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.7e-221 771.9 461 83.3
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.7e-221 771.9 461 83.3
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 1.8e-220 769.2 461 83.3
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 4.0e-220 768.1 461 83.3
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 8.3e-218 760.4 461 83.1
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 3.5e-216 755.0 467 79.7
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 3.5e-216 755.0 461 79.8
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 6.5e-215 750.7 459 79.3
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 1.1e-214 750.0 451 79.8
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 1.5e-214 749.6 451 80.3
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 2.1e-213 745.7 451 79.6
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 1.0e-212 743.4 460 79.1
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 9.8e-211 736.9 459 77.8
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 1.3e-210 736.5 455 78.9
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 2.2e-210 735.7 463 77.3
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 3.7e-210 734.9 463 77.8
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 3.7e-210 734.9 469 77.4
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 8.3e-210 733.8 433 81.8
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 8.3e-210 733.8 463 78.6
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 1.8e-209 732.6 451 79.4
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 5.4e-209 731.1 459 77.8
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 5.4e-209 731.1 459 78.0
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 5.4e-209 731.1 451 79.6
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 7.0e-209 730.7 448 78.6
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 1.2e-208 729.9 456 77.6
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 2.7e-208 728.8 457 77.0
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 3.5e-208 728.4 456 77.2
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 3.5e-208 728.4 445 77.5
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 5.9e-208 727.6 456 77.4
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 2.3e-207 725.7 464 75.0
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 2.3e-207 725.7 453 77.5
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 2.3e-207 725.7 450 78.9
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 3.8e-207 724.9 458 76.4
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 5.0e-207 724.5 458 77.3
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 4.2e-206 721.5 466 76.2
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 4.2e-206 721.5 487 74.1
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 2.1e-205 719.2 441 78.0
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 2.1e-205 719.2 447 78.1
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 2.8e-205 718.8 456 76.8
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 1.4e-204 716.5 448 77.5
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 2.3e-204 715.7 459 75.8
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 2.3e-204 715.7 466 75.3
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 4.0e-204 714.9 455 76.7
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 5.2e-204 714.5 466 74.7
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 1.2e-203 713.4 428 79.4
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 1.5e-203 713.0 448 77.2
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 2.0e-203 712.6 427 79.6
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 4.4e-203 711.4 463 75.2
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 4.4e-203 711.4 447 77.6
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 4.4e-203 711.4 447 77.6
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 7.5e-203 710.7 447 77.6
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 9.8e-203 710.3 442 78.1
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 1.3e-202 709.9 447 77.2
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 1.7e-202 709.5 437 77.6
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 2.2e-202 709.1 447 77.6
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 2.8e-202 708.8 439 78.1
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 2.8e-202 708.8 450 76.0
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 4.9e-202 708.0 445 76.0
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 2.4e-201 705.7 453 75.7
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 3.5e-200 701.8 447 74.3
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 5.9e-200 701.0 461 74.0
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 1.0e-199 700.3 436 75.7
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 1.3e-199 699.9 460 75.0
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 1.3e-199 699.9 443 76.5
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 2.9e-199 698.7 446 76.0
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 5.0e-199 698.0 455 75.6
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 1.5e-198 696.4 466 75.1
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 2.5e-198 695.7 426 78.4
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 2.5e-198 695.7 465 74.6
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 5.6e-198 694.5 456 75.2
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 7.3e-198 694.1 443 74.9
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 7.3e-198 694.1 459 75.4
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 9.5e-198 693.7 466 74.2
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 1.2e-197 693.3 465 74.6
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 1.2e-197 693.3 456 75.2
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 4.7e-197 691.4 466 73.0
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 4.7e-197 691.4 445 76.0
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 6.1e-197 691.0 458 75.1
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 6.1e-197 691.0 468 72.6
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 1.4e-196 689.9 460 74.8
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 1.8e-196 689.5 435 76.6
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 2.3e-196 689.1 455 75.6
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 5.2e-196 688.0 441 75.3
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 1.2e-195 686.8 444 74.1
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 1.2e-195 686.8 459 73.0
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 1.5e-195 686.4 459 73.2
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 1.5e-195 686.4 453 74.4
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 2.0e-195 686.0 470 71.5
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 2.0e-195 686.0 420 79.3
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 2.6e-195 685.6 441 74.4
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 4.4e-195 684.9 434 75.8
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 7.5e-195 684.1 463 73.4
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 9.8e-195 683.7 428 75.2
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 9.8e-195 683.7 439 74.0
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 2.2e-194 682.6 443 76.7
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 3.7e-194 681.8 443 74.0
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 3.7e-194 681.8 465 73.5
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 3.7e-194 681.8 444 75.0
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 1.1e-193 680.2 437 74.1
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 1.9e-193 679.5 445 72.8
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 4.1e-193 678.3 446 75.3
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 2.0e-192 676.0 445 74.4
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 2.7e-192 675.6 457 71.6
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 1.3e-191 673.3 426 76.1
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 1.7e-191 672.9 451 72.1
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 3.0e-191 672.2 445 73.0
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 8.6e-191 670.6 442 72.6
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 1.1e-190 670.2 451 71.8
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 1.1e-190 670.2 443 72.5
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 1.1e-190 670.2 440 73.9
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 1.5e-190 669.8 445 71.9
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 1.5e-190 669.8 444 71.8
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 1.5e-190 669.8 444 71.8
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.4e-188 663.3 409 77.8
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 1.2e-187 660.2 450 71.6
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 2.6e-187 659.1 402 79.1
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 1.3e-186 656.8 402 78.4
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 2.2e-186 656.0 461 69.4
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 4.9e-186 654.8 444 72.5
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 4.1e-185 651.7 444 72.7
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 1.6e-184 649.8 457 70.7
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 2.3e-183 646.0 420 73.8
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 5.6e-182 641.3 467 67.2
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 5.6e-182 641.3 446 69.3
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.2e-181 640.2 429 70.6
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 7.5e-179 630.9 389 77.9
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 2.2e-178 629.4 388 77.1
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 8.3e-178 627.5 382 80.6
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 3.2e-177 625.5 442 70.4
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 7.8e-176 620.9 382 77.7
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 7.8e-176 620.9 364 80.5
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 1.5e-174 616.7 388 75.8
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 7.3e-174 614.4 456 64.5
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.1e-169 600.5 467 64.2
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 2.5e-166 589.3 376 75.8
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 6.4e-162 574.7 450 65.1
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 5.3e-148 528.5 439 61.5
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 3.4e-147 525.8 437 60.9
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 3.0e-143 512.7 467 57.8
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.0e-139 500.0 441 58.5
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 1.5e-134 483.8 419 57.5
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 1.5e-131 473.8 467 54.6
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 2.9e-122 443.0 308 67.9
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 1.0e-119 434.5 287 73.5
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 2.0e-115 420.2 436 51.4
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 3.7e-109 399.4 237 80.6
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 6.1e-104 382.1 460 46.1
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 1.4e-103 380.9 231 77.9
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.6e-102 376.7 273 67.8
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 2.5e-97 360.1 442 45.9
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 3.5e-91 339.7 382 46.9
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.1e-73 281.6 272 58.1
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 2.1e-72 277.3 161 81.4
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 1.5e-54 218.0 165 68.5
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.3e-45 188.3 113 77.0
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 6.4e-45 186.0 126 68.3
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 5.8e-38 162.9 436 30.3
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.8e-37 160.2 97 78.4
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 6.7e-34 149.4 455 28.4
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 1.3e-24 118.6 84 64.3
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 5.3e-23 113.2 109 56.0
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 7.4e-17 92.8 69 69.6
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 6.5e-13 79.7 79 57.0
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 6.3e-08 63.2 43 69.8
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 1.1e-07 62.4 399 24.1
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 1.4e-07 62.0 43 67.4
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 1.8e-07 61.6 199 28.6
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 3.1e-07 60.8 197 29.4
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 5.3e-07 60.1 195 25.6
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 2.0e-06 58.2 256 24.2


User provided reference genes

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