Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD01G1208000 Malus domestica HOM05D002831 ORTHO05D010484 1.6e-24 115.2 53 100.0
Prupe.2G300500 Prunus persica HOM05D002831 ORTHO05D010484 1.6e-24 115.2 53 100.0
Prupe.7G027400 Prunus persica HOM05D002831 ORTHO05D010484 5.1e-23 110.2 51 96.1
Atru.ctg97_1.17 Acer truncatum HOM05D002831 ORTHO05D010484 3.3e-22 107.5 53 92.5
MD07G1278600 Malus domestica HOM05D002831 ORTHO05D010484 5.6e-22 106.7 53 90.6
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 9.6e-22 105.9 51 92.2
Potri.004G080000 Populus trichocarpa HOM05D002831 ORTHO05D010484 8.1e-21 102.8 53 88.7
Manes.14G022900 Manihot esculenta HOM05D002831 ORTHO05D010484 1.1e-20 102.4 53 86.8
Manes.06G152150 Manihot esculenta HOM05D002831 ORTHO05D010484 2.4e-20 101.3 53 84.9
CiPaw.06G003400 Carya illinoinensis HOM05D002831 ORTHO05D010484 3.1e-20 100.9 53 88.7
CiPaw.06G003200 Carya illinoinensis HOM05D002831 ORTHO05D010484 5.3e-20 100.1 53 86.8
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 1.2e-19 99.0 52 84.6
Thecc.03G183800 Theobroma cacao HOM05D002831 ORTHO05D010484 1.5e-19 98.6 53 83.0
Glyma.20G162551 Glycine max HOM05D002831 ORTHO05D010484 3.4e-19 97.4 53 83.0
Nn1g01626 Nelumbo nucifera HOM05D002831 ORTHO05D010484 3.4e-19 97.4 53 86.8
Gohir.D09G177300 Gossypium hirsutum HOM05D002831 ORTHO05D010484 7.6e-19 96.3 53 83.0
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 7.6e-19 96.3 52 84.6
Potri.017G143300 Populus trichocarpa HOM05D002831 ORTHO05D010484 7.6e-19 96.3 53 83.0
Gorai.006G199300 Gossypium raimondii HOM05D002831 ORTHO05D010484 9.9e-19 95.9 53 81.1
Glyma.09G132600 Glycine max HOM05D002831 ORTHO05D010484 1.7e-18 95.1 53 83.0
Glyma.16G179250 Glycine max HOM05D002831 ORTHO05D010484 1.7e-18 95.1 53 83.0
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 1.7e-18 95.1 52 80.8
FAN03G0192 Fragaria x ananassa HOM05D002831 ORTHO05D010484 2.9e-18 94.4 52 86.5
CSS0001563 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 4.9e-18 93.6 53 79.2
CSS0038907 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 4.9e-18 93.6 53 79.2
ClCG05G008350 Citrullus lanatus HOM05D002831 ORTHO05D010484 6.4e-18 93.2 53 79.2
Glyma.10G231251 Glycine max HOM05D002831 ORTHO05D010484 8.4e-18 92.8 53 75.5
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 1.1e-17 92.4 44 95.5
Gohir.D11G011200 Gossypium hirsutum HOM05D002831 ORTHO05D010484 2.4e-17 91.3 53 77.4
Lalb_Chr02g0141241 Lupinus albus HOM05D002831 ORTHO05D010484 2.4e-17 91.3 54 81.5
Gohir.A11G012000 Gossypium hirsutum HOM05D002831 ORTHO05D010484 3.2e-17 90.9 53 77.4
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 3.2e-17 90.9 52 75.0
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 4.2e-17 90.5 44 93.2
Peaxi162Scf00444g00118 Petunia axillaris HOM05D002831 ORTHO05D010484 5.4e-17 90.1 53 81.1
Cc02_g02410 Coffea canephora HOM05D002831 ORTHO05D010484 1.2e-16 89.0 53 79.2
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 7.9e-16 86.3 44 90.9
Nitab4.5_0000084g0420 Nicotiana tabacum HOM05D002831 ORTHO05D010484 1.3e-15 85.5 52 78.8
Lalb_Chr03g0034821 Lupinus albus HOM05D002831 ORTHO05D010484 2.3e-15 84.7 50 78.0
Carub.0008s1269 Capsella rubella HOM05D002831 ORTHO05D010484 3.9e-15 84.0 53 71.7
CiPaw.12G018400 Carya illinoinensis HOM05D002831 ORTHO05D010484 3.9e-15 84.0 44 88.6
Lalb_Chr21g0305231 Lupinus albus HOM05D002831 ORTHO05D010484 3.9e-15 84.0 54 75.9
Gohir.A12G255400 Gossypium hirsutum HOM05D002831 ORTHO05D010484 5.1e-15 83.6 53 71.7
Gohir.D12G256800 Gossypium hirsutum HOM05D002831 ORTHO05D010484 5.1e-15 83.6 53 71.7
Gorai.008G275000 Gossypium raimondii HOM05D002831 ORTHO05D010484 5.1e-15 83.6 53 71.7
Solyc03g007990.2 Solanum lycopersicum HOM05D002831 ORTHO05D010484 5.1e-15 83.6 53 77.4
Nitab4.5_0003825g0100 Nicotiana tabacum HOM05D002831 ORTHO05D010484 3.3e-14 80.9 52 78.8
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 3.3e-14 80.9 46 78.3
CAN.G126.13 Capsicum annuum HOM05D002831 ORTHO05D010484 7.4e-14 79.7 53 75.5
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 2.1e-13 78.2 43 81.4
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 2.1e-13 78.2 48 75.0
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 2.1e-13 78.2 48 77.1
Carub.0007s1529 Capsella rubella HOM05D002831 ORTHO05D010484 8.1e-13 76.3 53 66.0
CARHR233120 Cardamine hirsuta HOM05D002831 ORTHO05D010484 8.1e-13 76.3 53 67.9
CSS0020125 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 1.8e-12 75.1 53 67.9
CSS0026204 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 1.8e-12 75.1 53 67.9
BolC1t02050H Brassica oleracea HOM05D002831 ORTHO05D010484 4.0e-12 73.9 53 66.0
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 4.0e-12 73.9 43 79.1
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 9.0e-12 72.8 43 76.7
BraA01t01649Z Brassica rapa HOM05D002831 ORTHO05D010484 1.2e-11 72.4 53 64.2
CAN.G204.17 Capsicum annuum HOM05D002831 ORTHO05D010484 1.2e-11 72.4 53 71.7
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 3.4e-11 70.9 45 71.1
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 5.8e-11 70.1 47 68.1
BolC1t02047H Brassica oleracea HOM05D002831 ORTHO05D010484 1.3e-10 68.9 53 66.0
BraA01t01646Z Brassica rapa HOM05D002831 ORTHO05D010484 1.3e-10 68.9 53 66.0
Lalb_Chr06g0161311 Lupinus albus HOM05D002831 ORTHO05D010484 3.8e-10 67.4 44 77.3
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 3.8e-10 67.4 46 65.2
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 6.4e-10 66.6 32 93.8
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 6.4e-10 66.6 32 93.8
A03p56200 Brassica napus HOM05D002831 ORTHO05D010484 8.4e-10 66.2 53 60.4
BraA03t14690Z Brassica rapa HOM05D002831 ORTHO05D010484 8.4e-10 66.2 53 60.4
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.4e-09 65.5 53 58.5
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 1.9e-09 65.1 39 76.9
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 3.2e-09 64.3 47 66.0
A02p11710 Brassica napus HOM05D002831 ORTHO05D010484 9.3e-09 62.8 35 77.1
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 1.2e-08 62.4 39 71.8
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 2.1e-08 61.6 47 59.6
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 2.7e-08 61.2 44 77.3
BolC7t45935H Brassica oleracea HOM05D002831 ORTHO05D010484 3.5e-08 60.8 53 56.6
Sabra05G0003700 Salix brachista HOM05D000273 ORTHO05D000198 3.5e-08 60.8 37 75.7
Peaxi162Scf00618g00726 Petunia axillaris HOM05D002831 ORTHO05D010484 1.3e-07 58.9 44 70.5
CARHR233140 Cardamine hirsuta HOM05D002831 ORTHO05D010484 3.0e-07 57.8 37 67.6
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 4.3e-06 53.9 31 80.6


User provided reference genes

Program Settings