Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 1.8e-193 679.1 351 100.0
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 9.7e-179 630.2 347 93.1
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 1.1e-169 600.1 350 88.9
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.4e-169 599.7 350 88.9
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 9.1e-169 597.0 350 88.6
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 9.1e-169 597.0 350 88.6
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 1.0e-167 593.6 350 87.7
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.2e-167 592.4 350 87.7
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.5e-166 587.8 367 84.5
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 7.2e-166 587.4 339 86.1
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 2.7e-165 585.5 355 83.4
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 8.0e-165 583.9 329 88.4
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 3.9e-164 581.6 348 84.2
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 1.1e-163 580.1 353 83.6
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 1.5e-163 579.7 329 88.1
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 9.7e-163 577.0 330 86.4
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 1.3e-162 576.6 361 81.2
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 2.8e-162 575.5 337 84.3
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 3.7e-162 575.1 346 84.1
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 3.7e-162 575.1 348 83.0
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 8.2e-162 573.9 354 81.4
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.1e-161 573.5 348 83.0
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 1.1e-161 573.5 348 82.8
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 1.1e-161 573.5 332 86.4
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 3.1e-161 572.0 330 87.0
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 4.1e-161 571.6 344 83.4
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 4.1e-161 571.6 337 84.9
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 5.3e-161 571.2 330 86.4
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 7.0e-161 570.9 346 84.1
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 2.6e-160 568.9 346 82.9
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 2.6e-160 568.9 327 86.5
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 2.6e-160 568.9 327 86.5
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 5.9e-160 567.8 327 86.2
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 5.9e-160 567.8 327 86.2
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 5.9e-160 567.8 332 85.5
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 7.7e-160 567.4 327 86.2
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 1.0e-159 567.0 338 84.6
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 1.0e-159 567.0 336 85.1
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 1.3e-159 566.6 346 83.2
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 1.7e-159 566.2 349 81.4
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 3.8e-159 565.1 385 77.4
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 5.0e-159 564.7 337 84.0
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 6.5e-159 564.3 354 81.4
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 6.5e-159 564.3 332 84.6
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 1.1e-158 563.5 345 81.7
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 1.5e-158 563.1 326 85.3
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 1.9e-158 562.8 351 80.9
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 1.9e-158 562.8 354 81.4
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 2.5e-158 562.4 347 82.4
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 3.2e-158 562.0 346 82.7
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 3.2e-158 562.0 346 82.7
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 4.2e-158 561.6 340 81.8
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 7.2e-158 560.8 346 82.7
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 9.4e-158 560.5 345 81.4
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 1.6e-157 559.7 346 82.9
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 1.6e-157 559.7 329 83.3
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 2.1e-157 559.3 334 84.1
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 2.1e-157 559.3 346 81.8
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 4.7e-157 558.1 343 82.5
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 8.0e-157 557.4 331 82.2
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 8.0e-157 557.4 345 80.9
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 8.0e-157 557.4 328 83.5
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 1.0e-156 557.0 343 82.5
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 1.4e-156 556.6 330 85.5
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.4e-156 556.6 327 85.0
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 3.0e-156 555.4 326 85.3
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 4.0e-156 555.1 330 83.9
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 4.0e-156 555.1 327 84.7
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 4.0e-156 555.1 352 80.1
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 5.2e-156 554.7 343 81.3
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 5.2e-156 554.7 331 83.4
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 6.7e-156 554.3 325 83.7
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 1.2e-155 553.5 344 80.8
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 1.2e-155 553.5 354 79.1
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 1.2e-155 553.5 352 80.7
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 5.7e-155 551.2 351 79.8
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 7.5e-155 550.8 346 79.8
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 1.7e-154 549.7 349 81.4
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 8.3e-154 547.4 350 79.1
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 3.1e-153 545.4 350 78.3
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 5.3e-153 544.7 350 79.4
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 7.0e-153 544.3 349 78.5
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 7.0e-153 544.3 350 78.3
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 2.7e-152 542.3 330 81.8
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 3.5e-152 542.0 349 78.2
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 5.9e-152 541.2 340 79.7
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 8.5e-151 537.3 333 82.0
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 1.9e-150 536.2 351 76.4
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 1.9e-150 536.2 301 88.0
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 4.2e-150 535.0 350 78.0
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 4.2e-150 535.0 346 78.9
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 7.2e-150 534.3 353 79.0
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 2.7e-149 532.3 380 71.8
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 2.7e-149 532.3 344 80.2
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 4.7e-149 531.6 355 79.2
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 3.0e-148 528.9 349 76.8
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 4.0e-148 528.5 350 77.4
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 7.5e-147 524.2 372 73.4
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 4.8e-146 521.5 349 75.4
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.2e-144 516.9 375 72.5
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 1.6e-144 516.5 358 74.9
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 5.9e-144 514.6 323 78.6
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 2.3e-143 512.7 323 78.3
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 3.3e-142 508.8 402 69.2
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 3.3e-142 508.8 297 85.9
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 8.0e-141 504.2 334 77.2
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 1.5e-139 500.0 329 78.4
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 5.7e-139 498.0 411 65.0
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 7.5e-139 497.7 325 73.8
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 2.7e-136 489.2 288 85.1
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 3.5e-136 488.8 344 73.5
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 1.1e-134 483.8 339 72.0
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.7e-130 468.8 385 66.5
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 2.3e-127 459.5 343 70.3
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 3.9e-127 458.8 328 69.5
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 5.0e-127 458.4 328 68.9
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 3.3e-126 455.7 322 70.8
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 4.3e-126 455.3 261 88.1
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 7.3e-126 454.5 324 69.4
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 9.5e-126 454.1 343 66.8
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 1.2e-125 453.8 308 74.7
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 2.9e-122 442.6 283 82.3
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 8.6e-119 431.0 302 71.2
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 5.6e-118 428.3 320 66.9
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 4.0e-116 422.2 308 66.9
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.5e-115 420.2 369 62.3
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 2.0e-115 419.9 330 63.0
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 9.9e-115 417.5 261 80.1
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 3.5e-112 409.1 343 65.6
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.9e-110 403.3 275 75.6
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 8.1e-109 397.9 243 82.7
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 1.1e-108 397.5 328 64.6
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 2.4e-108 396.4 245 81.2
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 2.0e-107 393.3 240 84.2
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 2.6e-107 392.9 300 66.0
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 3.4e-107 392.5 241 82.6
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.7e-106 390.2 274 69.3
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 2.3e-103 379.8 238 78.6
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 8.7e-103 377.9 245 79.6
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 4.8e-101 372.1 243 77.8
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 7.6e-99 364.8 355 58.9
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 4.2e-97 359.0 335 55.8
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 1.6e-88 330.5 201 83.6
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 1.1e-73 281.2 203 73.9
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 4.6e-72 275.8 285 57.2
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 5.7e-62 242.3 307 47.2
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 2.4e-60 236.9 161 72.0
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 2.1e-56 223.8 159 68.6
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 6.7e-55 218.8 350 44.3
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 1.3e-53 214.5 138 79.0
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 4.8e-53 212.6 253 52.6
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 2.0e-51 207.2 126 81.7
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 4.7e-48 196.1 115 80.0
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 3.1e-44 183.3 233 40.8
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 2.9e-42 176.8 208 47.6
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.0e-39 168.3 104 78.8
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.7e-38 162.5 96 84.4
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 6.3e-37 159.1 101 73.3
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 7.7e-35 152.1 88 80.7
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 6.5e-34 149.1 96 81.2
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 1.5e-33 147.9 98 72.4
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 3.2e-33 146.7 110 71.8
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 4.4e-30 136.3 76 86.8
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 1.8e-28 131.0 189 49.2
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 3.5e-27 126.7 87 69.0
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 2.1e-24 117.5 93 67.7
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 4.9e-21 106.3 65 76.9
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 1.6e-19 101.3 78 62.8
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 2.7e-19 100.5 73 75.3
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.7e-18 97.8 73 60.3
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 1.7e-18 97.8 62 79.0
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 1.7e-18 97.8 76 64.5
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 2.8e-16 90.5 78 67.9
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 8.9e-07 58.9 45 64.4


User provided reference genes

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