Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 1.3e-219 766.1 408 100.0
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 2.6e-167 592.4 408 79.4
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 6.9e-144 514.6 389 74.0
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 4.2e-133 478.8 470 63.8
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.2e-132 477.2 470 63.4
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 1.9e-130 469.9 469 62.9
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 4.1e-128 462.2 461 63.3
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.0e-127 459.9 461 62.7
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 1.1e-125 454.1 411 65.0
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 7.9e-124 448.0 462 62.3
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 3.1e-120 436.0 411 59.9
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 2.9e-118 429.5 409 61.6
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 2.1e-116 423.3 411 58.6
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 1.8e-115 420.2 385 63.4
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 5.7e-114 415.2 382 61.0
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 3.7e-113 412.5 411 59.6
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 1.5e-111 407.1 414 58.5
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 2.6e-111 406.4 438 55.7
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 1.3e-110 404.1 411 55.7
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 3.8e-110 402.5 411 55.7
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 3.2e-109 399.4 419 56.3
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 5.2e-107 392.1 412 57.3
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 1.8e-104 383.6 408 57.6
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 5.5e-101 372.1 412 54.4
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 2.1e-100 370.2 374 54.5
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 2.0e-98 363.6 425 53.4
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 7.5e-98 361.7 416 54.1
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 7.5e-98 361.7 387 55.3
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 1.7e-94 350.5 422 52.4
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 1.2e-92 344.4 409 55.3
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 1.2e-92 344.4 413 54.5
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 1.6e-92 344.0 419 52.3
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 1.4e-91 340.9 409 53.3
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 1.8e-91 340.5 330 60.3
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 2.6e-90 336.7 423 51.8
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 9.8e-90 334.7 424 50.5
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 1.4e-88 330.9 349 57.0
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 7.0e-88 328.6 417 48.0
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 5.9e-87 325.5 432 49.8
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 4.4e-82 309.3 423 49.4
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 1.3e-81 307.8 423 46.3
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 3.7e-81 306.2 431 47.1
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 1.1e-80 304.7 427 47.3
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 1.8e-80 303.9 391 48.6
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 4.1e-80 302.8 389 50.9
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 1.6e-79 300.8 454 43.0
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 1.7e-78 297.4 267 62.2
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 1.7e-78 297.4 417 45.8
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 1.1e-77 294.7 424 47.9
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 1.9e-77 293.9 443 44.0
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 2.5e-77 293.5 400 48.2
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 4.3e-77 292.7 417 45.1
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 2.1e-76 290.4 315 57.1
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 2.8e-76 290.0 416 45.9
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 1.8e-75 287.3 464 43.3
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 2.3e-75 287.0 389 49.4
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 8.9e-75 285.0 439 44.6
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 8.9e-75 285.0 255 61.6
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 8.9e-75 285.0 384 46.9
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 1.5e-74 284.3 460 42.0
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 2.6e-74 283.5 405 47.9
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 4.4e-74 282.7 460 43.5
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 5.8e-74 282.3 460 42.0
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 1.3e-73 281.2 263 63.9
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 1.3e-73 281.2 342 52.0
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.7e-73 280.8 212 77.4
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 6.4e-73 278.9 392 47.4
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 1.9e-72 277.3 415 44.1
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 1.3e-70 271.2 402 44.5
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 3.0e-70 270.0 474 42.0
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 3.9e-70 269.6 467 40.3
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 6.6e-70 268.9 461 41.0
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 1.9e-69 267.3 464 40.1
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 5.6e-69 265.8 421 43.0
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 7.3e-69 265.4 420 42.6
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 2.1e-68 263.8 379 47.0
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 5.2e-67 259.2 421 43.7
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 8.9e-67 258.5 383 46.5
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 2.6e-66 256.9 343 48.4
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 7.5e-66 255.4 245 59.2
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.7e-65 254.2 262 56.9
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 3.7e-65 253.1 431 40.1
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 3.7e-65 253.1 434 41.2
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 1.6e-63 247.7 262 56.9
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 2.3e-62 243.8 242 59.1
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 2.3e-62 243.8 419 42.2
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 2.5e-61 240.4 376 41.8
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 9.5e-61 238.4 400 40.0
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 6.2e-60 235.7 433 41.3
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 1.1e-59 235.0 411 40.4
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 2.3e-59 233.8 398 39.7
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 2.0e-58 230.7 464 40.1
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 2.9e-57 226.9 415 40.0
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 2.9e-57 226.9 419 39.1
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 6.4e-57 225.7 433 39.5
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 2.4e-56 223.8 258 49.2
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 2.7e-55 220.3 427 38.9
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 3.5e-55 219.9 354 41.2
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 1.0e-54 218.4 426 40.4
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 8.6e-54 215.3 272 51.5
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 1.1e-53 214.9 418 39.5
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 5.6e-53 212.6 265 51.7
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 3.6e-52 209.9 276 50.0
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 5.2e-51 206.1 465 35.5
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 4.2e-48 196.4 195 55.9
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 2.1e-47 194.1 437 36.6
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 3.4e-42 176.8 260 45.0
vmacro20940 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 1.0e-38 165.2 144 64.6
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 5.1e-38 162.9 330 37.9
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 8.7e-38 162.2 341 35.5
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 3.9e-30 136.7 284 39.4
QL08p048682 Quercus lobata HOM05D005648 ORTHO05D007357 3.3e-29 133.7 115 63.5
Zm00001eb000540 Zea mays HOM05D005648 ORTHO05D007357 6.9e-27 125.9 281 37.4
MBI06_g29680_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.6e-26 124.0 132 55.3
Os03g0106300 Oryza sativa ssp. japonica HOM05D005648 ORTHO05D007357 4.5e-26 123.2 495 29.1
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 2.9e-25 120.6 407 29.7
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 3.2e-24 117.1 290 32.8
arahy.Tifrunner.gnm1.ann1.QHU48Z Arachis hypogaea HOM05D005648 ORTHO05D007357 6.0e-23 112.8 143 49.7
MBI18_g40590_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.8e-22 111.3 257 34.6
CSS0009989 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 5.7e-21 106.3 108 56.5
CSS0016999 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 9.6e-21 105.5 80 73.8
MBI01_g12685_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D007357 1.3e-20 105.1 93 55.9
FAN10G0802 Fragaria x ananassa HOM05D005648 ORTHO05D007357 8.2e-20 102.4 74 78.4
SHI13452 Sapria himalayana HOM05D005648 ORTHO05D007357 1.1e-19 102.1 101 60.4
Eucgr.D02411 Eucalyptus grandis HOM05D005648 ORTHO05D029324 1.6e-15 88.2 130 46.2
Eucgr.D02400 Eucalyptus grandis HOM05D005648 ORTHO05D029324 3.5e-15 87.0 129 45.0
MBI18_g42710_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 3.5e-15 87.0 74 59.5
SalBow3G1978 Salvia bowleyana HOM05D005648 ORTHO05D007357 2.3e-14 84.3 81 60.5
MBI17_g41096_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 6.7e-14 82.8 68 58.8
Sabra02G0127100 Salix brachista HOM05D005648 ORTHO05D007357 2.5e-13 80.9 148 35.1
MBI19_g11759_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D002414 1.3e-12 78.6 74 51.4
MBI06_g27427_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.2e-12 77.8 71 59.2
Eucgr.D02395 Eucalyptus grandis HOM05D005648 ORTHO05D029324 6.9e-11 72.8 95 46.3
Ciclev10024524m.g Citrus clementina HOM05D005648 ORTHO05D007357 5.0e-09 66.6 74 52.7
Eucgr.D02408 Eucalyptus grandis HOM05D005648 ORTHO05D029324 1.1e-08 65.5 84 47.6
MBI12_g03930_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D014274 6.1e-07 59.7 64 59.4
Lalb_Chr10g0096921 Lupinus albus HOM05D005648 ORTHO05D007357 1.0e-06 58.9 78 44.9
Hund16647 Selenicereus undatus HOM05D005648 ORTHO05D007357 1.0e-06 58.9 102 43.1
vmacro20941 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 1.0e-06 58.9 127 37.8


User provided reference genes

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