Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 4.9e-85 317.8 163 100.0
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 5.5e-76 287.7 167 87.4
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 1.2e-75 286.6 167 86.8
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 1.4e-71 273.1 167 82.0
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.4e-71 273.1 167 82.0
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.4e-71 273.1 167 82.0
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 1.4e-71 273.1 167 82.0
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 5.3e-71 271.2 167 81.4
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 2.0e-70 269.2 167 81.4
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 7.7e-70 267.3 166 80.1
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 2.9e-69 265.4 167 79.0
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 5.0e-69 264.6 167 79.0
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 6.5e-69 264.2 165 81.2
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 1.4e-68 263.1 167 78.4
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 4.2e-68 261.5 168 78.6
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 5.5e-68 261.2 158 82.9
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 5.5e-68 261.2 165 79.4
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 5.5e-68 261.2 163 77.9
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 5.5e-68 261.2 163 79.8
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 7.2e-68 260.8 165 79.4
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 9.4e-68 260.4 165 79.4
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 1.6e-67 259.6 165 80.6
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 6.1e-67 257.7 165 80.0
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 7.9e-67 257.3 167 77.8
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 7.9e-67 257.3 167 77.2
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 1.0e-66 256.9 167 77.2
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 2.3e-66 255.8 170 77.1
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 5.1e-66 254.6 167 75.4
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 8.8e-66 253.8 167 76.6
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 8.8e-66 253.8 167 76.6
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 1.1e-65 253.4 166 75.9
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 2.0e-65 252.7 191 69.6
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 2.5e-65 252.3 162 76.5
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 3.3e-65 251.9 166 74.7
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 5.7e-65 251.1 163 75.5
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 7.4e-65 250.8 167 75.4
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 3.7e-64 248.4 155 78.1
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 8.2e-64 247.3 160 76.2
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 3.1e-63 245.4 167 73.7
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 3.1e-63 245.4 163 73.0
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 1.5e-62 243.0 189 67.7
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 1.5e-62 243.0 167 74.3
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 2.6e-62 242.3 167 73.7
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 3.4e-62 241.9 165 72.7
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 5.9e-62 241.1 167 73.1
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 5.9e-62 241.1 166 75.9
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 5.9e-62 241.1 163 71.8
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 5.9e-62 241.1 165 72.1
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 5.9e-62 241.1 165 72.1
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 5.9e-62 241.1 163 73.0
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 7.7e-62 240.7 166 73.5
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 1.3e-61 240.0 162 72.8
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 1.7e-61 239.6 189 66.7
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 2.2e-61 239.2 158 74.7
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 2.9e-61 238.8 167 72.5
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 2.9e-61 238.8 167 72.5
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 2.9e-61 238.8 167 72.5
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 2.9e-61 238.8 162 70.4
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 3.8e-61 238.4 163 73.6
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 5.0e-61 238.0 149 78.5
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 5.0e-61 238.0 160 72.5
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 8.5e-61 237.3 162 72.8
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 8.5e-61 237.3 166 72.9
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 8.5e-61 237.3 162 71.0
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 1.1e-60 236.9 166 72.3
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 1.4e-60 236.5 155 76.1
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 1.9e-60 236.1 163 70.6
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 3.2e-60 235.3 168 73.2
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 4.2e-60 235.0 163 73.0
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 5.5e-60 234.6 162 71.0
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 9.4e-60 233.8 163 71.8
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 1.2e-59 233.4 162 72.2
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 1.2e-59 233.4 162 72.2
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 1.6e-59 233.0 201 63.7
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 2.1e-59 232.6 167 69.5
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 1.4e-58 229.9 149 77.9
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 1.8e-58 229.6 162 69.1
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 1.1e-57 226.9 154 74.0
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 1.1e-57 226.9 138 79.7
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 4.8e-56 221.5 162 63.6
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 7.0e-55 217.6 140 75.0
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 1.2e-54 216.9 137 73.0
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 2.0e-54 216.1 163 61.3
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 3.5e-54 215.3 184 59.8
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 2.7e-51 205.7 154 64.3
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 3.6e-51 205.3 154 64.9
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 1.8e-50 203.0 154 63.6
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 3.0e-50 202.2 128 72.7
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 3.0e-50 202.2 155 65.2
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 5.2e-50 201.4 117 84.6
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 1.1e-49 200.3 150 62.0
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 1.5e-49 199.9 150 62.0
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 2.0e-49 199.5 152 63.8
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 2.0e-49 199.5 150 61.3
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 2.0e-49 199.5 150 61.3
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 2.6e-49 199.1 139 69.1
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 5.7e-49 198.0 170 62.9
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 9.7e-49 197.2 146 63.0
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 9.7e-49 197.2 127 74.8
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 3.7e-48 195.3 137 67.2
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 3.7e-48 195.3 150 60.0
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 3.7e-48 195.3 163 60.1
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 4.8e-48 194.9 150 60.7
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 1.8e-47 193.0 127 69.3
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 2.4e-47 192.6 136 64.7
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 2.4e-47 192.6 118 79.7
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 7.0e-47 191.0 157 58.0
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 3.5e-46 188.7 107 86.9
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 3.5e-46 188.7 118 78.8
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 4.5e-46 188.3 159 56.0
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 7.7e-46 187.6 159 55.3
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 1.3e-45 186.8 137 62.0
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.3e-45 186.8 159 55.3
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.2e-45 186.0 159 55.3
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 6.5e-45 184.5 117 77.8
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 3.2e-44 182.2 121 77.7
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 3.2e-44 182.2 157 55.4
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 2.2e-40 169.5 113 71.7
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 2.4e-39 166.0 129 67.4
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 5.0e-37 158.3 89 84.3
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.7e-35 152.5 154 52.6
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 2.0e-33 146.4 120 60.8
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 7.5e-33 144.4 103 66.0
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 8.3e-32 141.0 156 48.1
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 1.8e-31 139.8 162 45.1
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 7.0e-31 137.9 159 47.2
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 1.2e-30 137.1 132 51.5
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 2.0e-30 136.3 128 57.0
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 4.2e-28 128.6 123 50.4
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 9.5e-28 127.5 110 55.5
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 1.2e-27 127.1 119 59.7
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 2.1e-27 126.3 76 77.6
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 6.1e-27 124.8 146 45.9
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 1.0e-26 124.0 86 70.9
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 4.4e-25 118.6 73 76.7
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 7.0e-23 111.3 163 44.2
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 3.9e-21 105.5 71 67.6
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 5.0e-21 105.1 103 48.5
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 3.3e-20 102.4 143 42.0
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 4.3e-20 102.1 57 75.4
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 1.2e-19 100.5 75 58.7
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 1.2e-19 100.5 75 58.7
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 1.2e-19 100.5 75 58.7
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.0e-18 97.4 91 54.9
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 3.5e-14 82.4 69 62.3
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 4.6e-14 82.0 59 66.1
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 2.3e-13 79.7 58 63.8
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 5.0e-13 78.6 71 62.0
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 7.3e-12 74.7 163 34.4
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 4.7e-11 72.0 54 64.8
Atru.chr5.208 Acer truncatum HOM05D004832 ORTHO05D005821 1.8e-10 70.1 54 70.4
Atru.chr5.565 Acer truncatum HOM05D004832 ORTHO05D005821 2.3e-10 69.7 51 66.7
Atru.chr5.584 Acer truncatum HOM05D004832 ORTHO05D005821 3.1e-10 69.3 50 66.0
QL12p027355 Quercus lobata HOM05D001289 ORTHO05D002298 1.6e-06 57.0 34 73.5
vmacro05238 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 1.6e-06 57.0 42 73.8
vmacro13464 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 1.6e-06 57.0 44 65.9


User provided reference genes

Program Settings