Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G048000 Prunus persica HOM05D006010 ORTHO05D007381 1.5e-162 576.2 307 100.0
MD02G1273300 Malus domestica HOM05D006010 ORTHO05D007381 9.2e-125 450.7 307 79.5
RcHm_v2.0_Chr3g0492111 Rosa chinensis HOM05D006010 ORTHO05D007381 5.2e-120 434.9 307 76.5
FvH4_1g30030 Fragaria vesca HOM05D006010 ORTHO05D007381 1.1e-112 410.6 308 74.0
FAN19G0427 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.1e-112 410.6 308 74.4
FAN28G0351 Fragaria x ananassa HOM05D006010 ORTHO05D007381 6.6e-107 391.3 342 65.8
FAN28G1345 Fragaria x ananassa HOM05D006010 ORTHO05D007381 8.1e-105 384.4 308 69.8
MD07G1042200 Malus domestica HOM05D006010 ORTHO05D007381 1.4e-104 383.6 307 72.0
CiPaw.03G074500 Carya illinoinensis HOM05D006010 ORTHO05D007381 2.1e-97 359.8 330 62.7
FAN23G2851 Fragaria x ananassa HOM05D006010 ORTHO05D007381 4.8e-97 358.6 338 62.4
Lj4g0009716 Lotus japonicus HOM05D006010 ORTHO05D007381 3.2e-93 345.9 312 62.5
TWI53G0527 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 9.3e-93 344.4 324 61.4
Ca_05962_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 1.7e-91 340.1 325 60.3
Actinidia35721 Actinidia chinensis HOM05D006010 ORTHO05D007381 6.6e-91 338.2 336 60.1
Cc02_g11480 Coffea canephora HOM05D006010 ORTHO05D007381 8.7e-91 337.8 315 60.6
QL12p000853 Quercus lobata HOM05D006010 ORTHO05D007381 1.6e-89 333.6 382 53.7
Potri.017G135500 Populus trichocarpa HOM05D006010 ORTHO05D007381 4.8e-89 332.0 339 59.3
Phvul.004G098200 Phaseolus vulgaris HOM05D006010 ORTHO05D007381 6.2e-89 331.6 331 58.9
Lalb_Chr10g0104261 Lupinus albus HOM05D006010 ORTHO05D007381 1.8e-88 330.1 330 59.1
Cpa.g.sc116.81 Carica papaya HOM05D006010 ORTHO05D007381 4.0e-88 328.9 375 52.8
Sed0022983 Sechium edule HOM05D006010 ORTHO05D007381 4.0e-88 328.9 308 62.7
FAN26G2228 Fragaria x ananassa HOM05D006010 ORTHO05D007381 5.3e-88 328.6 263 71.5
PGR004G1862 Punica granatum HOM05D006010 ORTHO05D007381 5.3e-88 328.6 320 60.9
Sed0003139 Sechium edule HOM05D006010 ORTHO05D007381 1.2e-87 327.4 312 63.1
Sabra17G0114300 Salix brachista HOM05D006010 ORTHO05D007381 4.5e-87 325.5 348 56.9
Sabra17G0111300 Salix brachista HOM05D006010 ORTHO05D007381 1.3e-86 323.9 348 56.9
Medtr5g077800 Medicago truncatula HOM05D006010 ORTHO05D007381 2.2e-86 323.2 331 56.8
Haze_14288 Corylus avellana HOM05D006010 ORTHO05D007381 4.9e-86 322.0 325 58.2
Cfa007784 Carpinus fangiana HOM05D006010 ORTHO05D007381 3.2e-85 319.3 325 57.5
Hma1.2p1_0249F.1_g102390 Hydrangea macrophylla HOM05D006010 ORTHO05D007381 3.2e-85 319.3 310 60.3
CANSAT01G2297 Cannabis sativa HOM05D006010 ORTHO05D007381 5.5e-85 318.5 361 55.1
CsaV3_2G017210 Cucumis sativus L. HOM05D006010 ORTHO05D007381 9.3e-85 317.8 309 62.1
Psat2g045640 Pisum sativum HOM05D006010 ORTHO05D007381 1.2e-84 317.4 332 56.9
arahy.Tifrunner.gnm1.ann1.14A9Q3 Arachis hypogaea HOM05D006010 ORTHO05D007381 4.6e-84 315.5 323 58.8
arahy.Tifrunner.gnm1.ann1.RW4QB8 Arachis hypogaea HOM05D006010 ORTHO05D007381 4.6e-84 315.5 321 59.8
GSVIVG01015997001 Vitis vinifera HOM05D006010 ORTHO05D007381 1.8e-83 313.5 405 50.4
Ciclev10026000m.g Citrus clementina HOM05D006010 ORTHO05D007381 8.7e-83 311.2 345 56.5
arahy.Tifrunner.gnm1.ann1.ZG5C6W Arachis hypogaea HOM05D006010 ORTHO05D007381 1.9e-82 310.1 317 59.0
MELO3C020924.2 Cucumis melo HOM05D006010 ORTHO05D007381 3.3e-82 309.3 309 61.2
Rhsim10G0180400 Rhododendron simsii HOM05D006010 ORTHO05D007381 3.7e-81 305.8 330 55.5
Eucgr.F02881 Eucalyptus grandis HOM05D006010 ORTHO05D007381 6.2e-81 305.1 319 58.6
ClCG05G010670 Citrullus lanatus HOM05D006010 ORTHO05D007381 1.4e-80 303.9 308 60.1
VMungo0464G0699 Vigna mungo HOM05D006010 ORTHO05D007381 3.1e-80 302.8 297 58.6
Peaxi162Scf00464g00430 Petunia axillaris HOM05D006010 ORTHO05D007381 5.3e-80 302.0 329 55.3
MSTRG.15654 Avicennia marina HOM05D006010 ORTHO05D007381 3.4e-79 299.3 337 54.3
EL10Ac3g05516 Beta vulgaris HOM05D006010 ORTHO05D007381 1.4e-77 293.9 313 55.3
PGSC0003DMG400013242 Solanum tuberosum HOM05D006010 ORTHO05D007381 1.9e-77 293.5 329 54.7
Actinidia28796 Actinidia chinensis HOM05D006010 ORTHO05D007381 3.2e-77 292.7 280 60.0
SalBow1G7757 Salvia bowleyana HOM05D006010 ORTHO05D007381 2.7e-76 289.7 336 52.7
TPR.G23647 Trifolium pratense HOM05D006010 ORTHO05D007381 2.7e-76 289.7 297 56.6
Sopen11g006280 Solanum pennellii HOM05D006010 ORTHO05D007381 3.5e-76 289.3 329 54.4
Migut.K00936 Erythranthe guttata HOM05D006010 ORTHO05D007381 1.3e-75 287.3 318 57.9
Oeu048940.2 Olea europaea HOM05D006010 ORTHO05D007381 1.3e-75 287.3 350 51.4
CAN.G222.64 Capsicum annuum HOM05D006010 ORTHO05D007381 5.1e-75 285.4 329 54.1
Atru.chr11.39 Acer truncatum HOM05D006010 ORTHO05D007381 5.7e-74 282.0 321 54.5
Duzib235G0102 Durio zibethinus HOM05D006010 ORTHO05D007381 2.1e-73 280.0 325 54.2
Nn3g17023 Nelumbo nucifera HOM05D006010 ORTHO05D007381 1.8e-72 276.9 353 51.0
Glyma.16G168300 Glycine max HOM05D006010 ORTHO05D007381 4.1e-72 275.8 327 51.7
ECA236G4224 Erigeron canadensis HOM05D006010 ORTHO05D007381 9.0e-72 274.6 312 53.8
Lsat_1_v5_gn_3_65880 Lactuca sativa HOM05D006010 ORTHO05D007381 1.5e-71 273.9 318 53.1
Glyma.02G082600 Glycine max HOM05D006010 ORTHO05D007381 2.6e-71 273.1 331 51.7
Hund11982 Selenicereus undatus HOM05D006010 ORTHO05D007381 2.2e-70 270.0 307 52.1
THA.LOC104827184 Tarenaya hassleriana HOM05D006010 ORTHO05D007381 1.1e-69 267.7 348 50.0
HanXRQChr15g0482991 Helianthus annuus HOM05D006010 ORTHO05D007381 3.6e-68 262.7 320 50.3
AUR62016215 Chenopodium quinoa HOM05D006010 ORTHO05D007381 2.3e-67 260.0 315 52.4
Thecc.06G019600 Theobroma cacao HOM05D006010 ORTHO05D007381 1.9e-66 256.9 371 46.4
GSVIVG01015998001 Vitis vinifera HOM05D006010 ORTHO05D007381 5.7e-66 255.4 289 56.1
unitig_0.g1692 Utricularia gibba HOM05D006010 ORTHO05D007381 2.2e-65 253.4 336 48.8
vmacro20589 Vaccinium macrocarpon HOM05D006010 ORTHO05D007381 1.5e-63 247.3 353 46.5
Sed0026765 Sechium edule HOM05D006010 ORTHO05D007381 2.2e-62 243.4 305 50.2
AUR62039273 Chenopodium quinoa HOM05D006010 ORTHO05D007381 3.8e-62 242.7 276 54.0
Solyc11g011490.2 Solanum lycopersicum HOM05D006010 ORTHO05D007381 3.8e-62 242.7 277 54.9
DCAR_014157 Daucus carota HOM05D006010 ORTHO05D007381 6.5e-62 241.9 319 47.3
Sp3g01890 Schrenkiella parvula HOM05D006010 ORTHO05D007381 6.1e-60 235.3 351 45.9
GSVIVG01016007001 Vitis vinifera HOM05D006010 ORTHO05D007381 3.0e-59 233.0 281 54.1
TAR623G0083 Trochodendron aralioides HOM05D006010 ORTHO05D007381 1.5e-58 230.7 364 45.1
COL.COLO4_31121 Corchorus olitorius HOM05D006010 ORTHO05D007381 2.0e-58 230.3 391 41.2
TWI74G0222 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 8.2e-57 224.9 256 53.9
CDE09G0547 Ceratophyllum demersum HOM05D006010 ORTHO05D007381 2.4e-56 223.4 385 40.5
Aa31LG5G13330 Aethionema arabicum HOM05D006010 ORTHO05D007381 1.5e-55 220.7 357 42.6
Sc22g0001300 Simmondsia chinensis HOM05D006010 ORTHO05D007381 1.5e-55 220.7 280 50.7
SGA_v2.0_scaffold115G32097 Striga asiatica HOM05D006010 ORTHO05D007381 2.0e-55 220.3 320 46.2
Gohir.A10G157800 Gossypium hirsutum HOM05D006010 ORTHO05D007381 6.5e-54 215.3 420 38.6
BcaC05g30500 Brassica carinata HOM05D000919 ORTHO05D004442 9.4e-53 211.5 313 46.3
Carub.0003s0196 Capsella rubella HOM05D006010 ORTHO05D007381 6.1e-52 208.8 281 48.0
Gorai.011G090700 Gossypium raimondii HOM05D006010 ORTHO05D007381 1.4e-51 207.6 422 37.9
FAN25G0538 Fragaria x ananassa HOM05D006010 ORTHO05D007381 3.0e-51 206.5 158 74.7
Lj2A517G41 Lonicera japonica HOM05D006010 ORTHO05D007381 3.0e-51 206.5 229 54.1
Gohir.D10G083400 Gossypium hirsutum HOM05D006010 ORTHO05D007381 1.5e-50 204.1 424 37.7
Ah.05g176710 Amaranthus hybridus HOM05D006010 ORTHO05D007381 2.0e-50 203.8 379 40.6
AL3G12280 Arabidopsis lyrata HOM05D006010 ORTHO05D007381 3.3e-50 203.0 280 46.1
Manes.07G077600 Manihot esculenta HOM05D006010 ORTHO05D007381 4.4e-50 202.6 284 48.6
C09p75990 Brassica napus HOM05D006010 ORTHO05D007381 6.3e-49 198.7 276 47.5
BolC5t35058H Brassica oleracea HOM05D006010 ORTHO05D007381 6.3e-49 198.7 276 47.5
A05p44250 Brassica napus HOM05D006010 ORTHO05D007381 8.2e-49 198.4 275 46.2
BraA06t23281Z Brassica rapa HOM05D000919 ORTHO05D004442 8.2e-49 198.4 275 46.2
AT3G02860 Arabidopsis thaliana HOM05D006010 ORTHO05D007381 1.8e-48 197.2 259 48.3
Thhalv10021193m.g Eutrema salsugineum HOM05D006010 ORTHO05D007381 2.0e-47 193.7 271 46.1
GSVIVG01016005001 Vitis vinifera HOM05D006010 ORTHO05D007381 3.5e-47 193.0 150 72.7
CARHR076870 Cardamine hirsuta HOM05D006010 ORTHO05D007381 7.2e-45 185.3 281 44.8
Ca_05837_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 5.2e-43 179.1 204 57.4
Os05g0495100 Oryza sativa ssp. japonica HOM05D006010 ORTHO05D007381 2.2e-41 173.7 365 37.3
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 2.8e-41 173.3 198 50.5
Zm00001eb291600 Zea mays HOM05D006010 ORTHO05D007381 3.1e-40 169.9 348 38.5
CSS0039891 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 5.3e-40 169.1 138 66.7
AagrBONN_evm.TU.Sc2ySwM_369.381 Anthoceros agrestis HOM05D006010 ORTHO05D007381 2.7e-39 166.8 260 44.6
Ca_05839_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 3.8e-38 162.9 132 63.6
SHI30126 Sapria himalayana HOM05D006010 ORTHO05D007381 2.8e-33 146.7 157 54.8
PSO478G0898 Papaver somniferum HOM05D006010 ORTHO05D007381 1.6e-31 141.0 255 41.2
ATR0320G006 Amborella trichopoda HOM05D006010 ORTHO05D007381 3.5e-31 139.8 159 52.2
Lj2A517G40 Lonicera japonica HOM05D006010 ORTHO05D007381 1.5e-29 134.4 103 74.8
FAN21G0982 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.5e-29 133.7 158 53.2
PSO017G1892 Papaver somniferum HOM05D006010 ORTHO05D007381 2.8e-28 130.2 363 33.1
SEGI_17538 Sequoiadendron giganteum HOM05D006010 ORTHO05D007381 6.1e-28 129.0 236 39.8
Mapoly0044s0136 Marchantia polymorpha HOM05D006010 ORTHO05D007381 8.0e-28 128.6 323 35.9
CSS0001849 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 1.4e-27 127.9 110 66.4
CSS0044569 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 1.4e-27 127.9 110 66.4
Nitab4.5_0011135g0050 Nicotiana tabacum HOM05D006010 ORTHO05D007381 4.4e-26 122.9 125 60.0
Aqoxy3G00232 Aquilegia oxysepala HOM05D006010 ORTHO05D007381 1.3e-22 111.3 126 54.8
Sed0018686 Sechium edule HOM05D006010 ORTHO05D007381 3.8e-22 109.8 65 78.5
Sed0023512 Sechium edule HOM05D006010 ORTHO05D007381 3.8e-22 109.8 68 76.5
ATR0320G008 Amborella trichopoda HOM05D006010 ORTHO05D007381 1.2e-20 104.8 138 45.7
GSVIVG01016036001 Vitis vinifera HOM05D006010 ORTHO05D007381 1.7e-17 94.4 67 70.1
Pp3c12_7630 Physcomitrium patens HOM05D006010 ORTHO05D007381 5.0e-14 82.8 263 31.6
SHI30124 Sapria himalayana HOM05D006010 ORTHO05D007381 5.0e-14 82.8 118 39.8
Glyma.14G212900 Glycine max HOM05D026408 ORTHO05D029776 2.5e-13 80.5 174 37.4
VMungo0647G0061 Vigna mungo HOM05D026408 ORTHO05D029776 4.9e-09 66.2 127 36.2
TPR.G36575 Trifolium pratense HOM05D006010 ORTHO05D007381 3.2e-08 63.5 54 59.3
CSS0015748 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 4.1e-08 63.2 70 52.9
CSS0044039 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 4.1e-08 63.2 70 52.9
QL06p002867 Quercus lobata HOM05D006010 ORTHO05D007381 9.2e-08 62.0 62 53.2
Phvul.008G238000 Phaseolus vulgaris HOM05D026408 ORTHO05D029776 1.3e-06 58.2 173 32.4


User provided reference genes

Program Settings