Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 9.2e-133 476.9 237 100.0
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 5.3e-128 461.1 237 96.2
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 2.5e-93 345.9 237 69.6
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 3.9e-91 338.6 234 68.4
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 1.1e-90 337.0 232 68.5
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 2.2e-89 332.8 232 68.5
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 5.3e-88 328.2 234 68.4
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 4.5e-87 325.1 230 67.0
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 8.5e-86 320.9 234 65.8
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.1e-85 320.5 234 65.4
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 2.5e-85 319.3 234 64.5
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 2.7e-84 315.8 200 77.0
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 1.0e-83 313.9 237 62.9
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 2.3e-83 312.8 230 65.2
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 3.0e-83 312.4 234 61.5
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 3.9e-83 312.0 233 65.2
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 5.1e-83 311.6 234 64.5
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 6.7e-83 311.2 237 62.9
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 8.8e-83 310.8 237 62.4
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.0e-82 309.7 234 64.5
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 3.3e-82 308.9 233 63.5
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 5.7e-82 308.1 234 64.5
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 3.7e-81 305.4 234 64.1
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.0e-79 299.7 235 62.6
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 5.9e-79 298.1 232 63.4
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 1.0e-78 297.4 234 62.0
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 1.3e-78 297.0 233 61.8
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 5.0e-78 295.0 233 61.4
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.5e-77 293.5 234 59.4
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 2.5e-77 292.7 230 61.3
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 3.0e-75 285.8 230 60.9
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 8.8e-75 284.3 230 60.9
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 2.0e-74 283.1 230 60.4
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 1.3e-73 280.4 232 59.1
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 2.2e-73 279.6 235 58.7
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 2.8e-73 279.3 237 59.5
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 3.7e-73 278.9 232 58.6
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 4.8e-73 278.5 233 57.9
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 8.2e-73 277.7 230 56.5
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 4.1e-72 275.4 238 57.6
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 9.1e-72 274.2 238 57.6
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 1.2e-71 273.9 231 59.3
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.2e-71 273.9 232 56.0
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.6e-71 273.5 238 57.6
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.6e-71 273.5 238 57.6
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 7.7e-71 271.2 238 57.1
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 7.7e-71 271.2 233 56.7
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 1.7e-70 270.0 226 58.4
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 2.9e-70 269.2 205 65.4
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 1.1e-69 267.3 236 55.9
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 2.5e-69 266.2 232 55.2
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 5.5e-69 265.0 235 53.6
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 5.5e-69 265.0 230 55.7
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 5.5e-69 265.0 232 55.6
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 9.4e-69 264.2 235 57.4
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 9.4e-69 264.2 235 57.4
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 1.6e-68 263.5 235 57.4
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.7e-68 262.7 235 57.0
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.8e-67 260.0 230 54.8
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 1.8e-67 260.0 237 54.9
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.8e-67 260.0 233 57.1
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 2.3e-67 259.6 231 54.5
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 4.0e-67 258.8 232 56.0
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 8.8e-67 257.7 232 56.0
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 8.8e-67 257.7 239 54.4
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 1.2e-66 257.3 235 54.0
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 5.7e-66 255.0 225 56.0
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 5.7e-66 255.0 234 54.7
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 9.7e-66 254.2 217 55.3
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 4.1e-64 248.8 234 53.0
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.2e-63 247.3 231 52.4
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 1.6e-63 246.9 240 52.5
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 1.6e-63 246.9 230 53.0
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 5.9e-63 245.0 231 52.4
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 5.9e-63 245.0 234 53.8
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 7.7e-63 244.6 231 52.4
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.3e-62 243.8 237 51.1
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 1.3e-62 243.8 237 53.2
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 2.9e-62 242.7 226 53.5
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 2.9e-62 242.7 234 54.3
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 5.0e-62 241.9 239 50.6
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 6.5e-62 241.5 234 53.4
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 1.5e-61 240.4 225 52.4
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 3.2e-61 239.2 231 51.1
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 7.2e-61 238.0 200 57.5
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 1.6e-60 236.9 232 50.0
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 1.6e-60 236.9 215 54.4
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 1.6e-60 236.9 234 54.3
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 3.6e-60 235.7 231 51.5
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 6.1e-60 235.0 234 51.3
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 3.0e-59 232.6 236 53.0
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 5.2e-59 231.9 234 51.7
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 8.8e-59 231.1 233 51.1
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 1.2e-58 230.7 234 49.6
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 7.5e-58 228.0 218 51.4
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 1.7e-57 226.9 233 49.4
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 1.7e-57 226.9 197 56.9
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 2.4e-56 223.0 230 50.4
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 1.2e-55 220.7 232 49.6
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 1.2e-55 220.7 230 48.7
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 2.7e-55 219.5 233 49.8
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 5.9e-55 218.4 238 47.1
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 1.7e-54 216.9 220 50.9
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 3.3e-53 212.6 212 48.6
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 4.2e-53 212.2 207 52.7
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 7.2e-53 211.5 154 63.6
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 9.5e-53 211.1 232 48.3
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 1.2e-52 210.7 207 52.2
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 2.1e-52 209.9 232 47.0
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 2.1e-52 209.9 232 47.0
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 8.0e-52 208.0 230 47.0
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 1.4e-51 207.2 232 46.1
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 1.8e-51 206.8 232 46.1
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 1.8e-51 206.8 232 46.1
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 3.0e-51 206.1 233 48.1
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 1.5e-50 203.8 233 45.9
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 1.5e-50 203.8 235 46.4
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 2.6e-50 203.0 228 46.5
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.4e-50 202.6 235 49.4
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 1.7e-49 200.3 232 44.8
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 3.7e-49 199.1 202 52.0
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 4.9e-49 198.7 239 41.8
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 4.1e-48 195.7 154 59.7
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 2.0e-47 193.4 216 46.8
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 2.7e-47 193.0 194 49.5
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 4.5e-47 192.2 234 45.7
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 7.8e-47 191.4 233 44.6
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 9.5e-45 184.5 226 41.6
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 2.1e-44 183.3 231 40.7
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 3.6e-44 182.6 152 58.6
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 4.7e-44 182.2 230 41.3
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 6.1e-44 181.8 232 45.7
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 4.0e-43 179.1 232 47.0
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 2.0e-42 176.8 229 44.5
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 5.8e-42 175.3 154 51.9
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 7.5e-42 174.9 183 48.1
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 3.7e-41 172.6 231 36.4
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 3.7e-41 172.6 232 45.7
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 3.7e-41 172.6 232 43.5
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 6.4e-41 171.8 178 48.3
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 8.3e-41 171.4 118 72.9
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 8.3e-41 171.4 239 37.7
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 1.9e-40 170.2 214 38.8
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 9.2e-40 167.9 232 43.1
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 2.7e-39 166.4 165 49.7
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 1.3e-38 164.1 233 43.3
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 1.3e-38 164.1 233 43.3
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.0e-38 162.9 212 46.7
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 2.5e-37 159.8 230 36.1
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 5.6e-37 158.7 107 71.0
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 1.2e-36 157.5 204 44.1
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 2.1e-36 156.8 147 51.7
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 6.8e-35 151.8 218 38.5
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 1.5e-34 150.6 164 47.0
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 2.4e-32 143.3 145 51.0
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 7.1e-32 141.7 219 33.8
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 3.5e-31 139.4 227 33.5
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 1.1e-29 134.4 139 48.2
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.9e-29 133.7 203 42.9
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 5.6e-29 132.1 191 35.1
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 6.4e-25 118.6 225 34.7
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.4e-24 116.7 145 47.6
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 1.6e-23 114.0 129 51.2
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 3.5e-23 112.8 80 65.0
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 2.3e-22 110.2 111 53.2
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 4.3e-21 105.9 127 42.5
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 4.3e-21 105.9 195 36.9
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 1.6e-20 104.0 91 58.2
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 6.2e-20 102.1 173 38.2
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 2.0e-18 97.1 79 60.8
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 2.9e-17 93.2 92 50.0
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 4.9e-17 92.4 159 30.2
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 2.7e-15 86.7 81 49.4
TAR636G2069 Trochodendron aralioides HOM05D003762 ORTHO05D004374 3.0e-14 83.2 60 63.3
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 2.5e-13 80.1 113 40.7
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 4.3e-13 79.3 100 42.0
Nitab4.5_0009310g0070 Nicotiana tabacum HOM05D003419 ORTHO05D004374 5.6e-13 79.0 142 38.7
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 2.4e-11 73.6 99 37.4
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 1.5e-10 70.9 54 57.4
SEGI_04929 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 7.9e-07 58.5 78 34.6
Nitab4.5_0004267g0010 Nicotiana tabacum HOM05D003762 ORTHO05D004374 5.1e-06 55.8 76 43.4


User provided reference genes

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