Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G560700 Prunus persica HOM05D003896 ORTHO05D004517 4.8e-69 264.2 122 100.0
CDE04G2322 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 1.9e-36 156.0 71 94.4
PGR142G1796 Punica granatum HOM05D003896 ORTHO05D004517 2.4e-36 155.6 70 98.6
MELO3C019495.2 Cucumis melo HOM05D003896 ORTHO05D004517 1.2e-35 153.3 74 87.8
Actinidia00232 Actinidia chinensis HOM05D003896 ORTHO05D004517 2.1e-35 152.5 70 94.3
FAN13G2961 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.7e-35 152.1 71 93.0
THA.LOC109116537 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 2.7e-35 152.1 70 94.3
Nn5g28709 Nelumbo nucifera HOM05D003896 ORTHO05D004517 6.0e-35 151.0 69 95.7
CANSAT11G1560 Cannabis sativa HOM05D003896 ORTHO05D004517 7.8e-35 150.6 70 94.3
Aqoxy2G00844 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 1.0e-34 150.2 75 86.7
Dinv19332 Davidia involucrata HOM05D003896 ORTHO05D004517 1.0e-34 150.2 68 94.1
MD08G1223400 Malus domestica HOM05D003896 ORTHO05D004517 1.0e-34 150.2 70 91.4
CsaV3_3G018780 Cucumis sativus L. HOM05D003896 ORTHO05D004517 1.3e-34 149.8 73 87.7
MBI13_g20498_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 1.3e-34 149.8 69 94.2
arahy.Tifrunner.gnm1.ann1.D7TB4J Arachis hypogaea HOM05D003896 ORTHO05D004517 1.7e-34 149.4 69 89.9
arahy.Tifrunner.gnm1.ann1.EN81KK Arachis hypogaea HOM05D003896 ORTHO05D004517 1.7e-34 149.4 69 89.9
MBI13_g29655_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 1.7e-34 149.4 68 94.1
FvH4_5g30500 Fragaria vesca HOM05D003896 ORTHO05D004517 2.3e-34 149.1 70 92.9
FAN18G4256 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.3e-34 149.1 70 92.9
Glyma.08G181800 Glycine max HOM05D003896 ORTHO05D004517 2.3e-34 149.1 70 91.4
Manes.02G178600 Manihot esculenta HOM05D003896 ORTHO05D004517 2.3e-34 149.1 70 92.9
Manes.18G091100 Manihot esculenta HOM05D003896 ORTHO05D004517 2.3e-34 149.1 70 91.4
Actinidia38960 Actinidia chinensis HOM05D003896 ORTHO05D004517 3.0e-34 148.7 70 91.4
Eucgr.I02701 Eucalyptus grandis HOM05D003896 ORTHO05D004517 3.0e-34 148.7 70 91.4
FAN04G1676 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.0e-34 148.7 115 62.6
RcHm_v2.0_Chr7g0225181 Rosa chinensis HOM05D003896 ORTHO05D004517 3.0e-34 148.7 69 92.8
Glyma.15G050500 Glycine max HOM05D003896 ORTHO05D004517 5.1e-34 147.9 70 90.0
Sed0011383 Sechium edule HOM05D003896 ORTHO05D004517 5.1e-34 147.9 74 87.8
Thecc.02G044000 Theobroma cacao HOM05D003896 ORTHO05D004517 5.1e-34 147.9 70 91.4
Atru.chr6.939 Acer truncatum HOM05D003896 ORTHO05D004517 6.6e-34 147.5 70 90.0
Potri.002G069200 Populus trichocarpa HOM05D003896 ORTHO05D004517 6.6e-34 147.5 70 92.9
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 1.1e-33 146.7 70 91.4
CiPaw.05G040300 Carya illinoinensis HOM05D003896 ORTHO05D004517 1.1e-33 146.7 70 91.4
Haze_10788 Corylus avellana HOM05D003896 ORTHO05D004517 1.1e-33 146.7 72 90.3
Sed0019459 Sechium edule HOM05D003896 ORTHO05D004517 1.5e-33 146.4 69 91.3
Aa31LG2G8780 Aethionema arabicum HOM05D003896 ORTHO05D004517 1.9e-33 146.0 69 92.8
AT1G15120 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 1.9e-33 146.0 70 90.0
TAR628G1659 Trochodendron aralioides HOM05D003896 ORTHO05D004517 1.9e-33 146.0 70 90.0
arahy.Tifrunner.gnm1.ann1.Q4HF2T Arachis hypogaea HOM05D003896 ORTHO05D004517 2.5e-33 145.6 70 91.4
CARHR015640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 2.5e-33 145.6 70 90.0
Psat1g218920 Pisum sativum HOM05D003896 ORTHO05D004517 2.5e-33 145.6 70 88.6
TWI14G0008 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 2.5e-33 145.6 70 90.0
BolC5t30061H Brassica oleracea HOM05D003896 ORTHO05D004517 3.3e-33 145.2 70 90.0
QL11p018723 Quercus lobata HOM05D003896 ORTHO05D004517 3.3e-33 145.2 68 91.2
BcaC05g25441 Brassica carinata HOM05D003896 ORTHO05D004517 5.6e-33 144.4 69 91.3
BraA08t35095Z Brassica rapa HOM05D003896 ORTHO05D004517 7.3e-33 144.1 70 88.6
Phvul.006G209400 Phaseolus vulgaris HOM05D003896 ORTHO05D004517 7.3e-33 144.1 70 87.1
ATR0772G203 Amborella trichopoda HOM05D003896 ORTHO05D004517 9.6e-33 143.7 79 82.3
Lj6g0000311 Lotus japonicus HOM05D003896 ORTHO05D004517 9.6e-33 143.7 70 90.0
VMungo0540G0553 Vigna mungo HOM05D000025 ORTHO05D000136 9.6e-33 143.7 69 89.9
AL1G27180 Arabidopsis lyrata HOM05D003896 ORTHO05D004517 1.2e-32 143.3 69 89.9
Potri.002G069301 Populus trichocarpa HOM05D003896 ORTHO05D004517 1.2e-32 143.3 69 88.4
Sp1g13460 Schrenkiella parvula HOM05D003896 ORTHO05D004517 1.2e-32 143.3 69 89.9
TWI23G0468 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 1.2e-32 143.3 70 87.1
BcaC07g38769 Brassica carinata HOM05D003896 ORTHO05D004517 1.6e-32 142.9 70 87.1
CSS0003096 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 1.6e-32 142.9 70 91.4
CSS0009103 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 1.6e-32 142.9 70 91.4
Dinv05188 Davidia involucrata HOM05D003896 ORTHO05D004517 1.6e-32 142.9 72 86.1
Gohir.D01G001100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.6e-32 142.9 70 88.6
Nn1g06112 Nelumbo nucifera HOM05D003896 ORTHO05D004517 1.6e-32 142.9 70 90.0
BcaB03g14560 Brassica carinata HOM05D003896 ORTHO05D004517 2.1e-32 142.5 80 80.0
A08p31730 Brassica napus HOM05D003896 ORTHO05D004517 2.1e-32 142.5 78 82.1
Carub.0001s1488 Capsella rubella HOM05D003896 ORTHO05D004517 2.1e-32 142.5 70 87.1
arahy.Tifrunner.gnm1.ann1.MYBE61 Arachis hypogaea HOM05D003896 ORTHO05D004517 2.8e-32 142.1 69 89.9
C08p17020 Brassica napus HOM05D003896 ORTHO05D004517 2.8e-32 142.1 80 76.2
BolC8t49327H Brassica oleracea HOM05D003896 ORTHO05D004517 2.8e-32 142.1 80 76.2
Duzib052G0314 Durio zibethinus HOM05D003896 ORTHO05D004517 3.6e-32 141.7 70 85.7
FAN17G0735 Fragaria x ananassa HOM05D003896 ORTHO05D004517 4.7e-32 141.4 70 87.1
Dinv24242 Davidia involucrata HOM05D003896 ORTHO05D004517 8.1e-32 140.6 70 87.1
ECA236G2466 Erigeron canadensis HOM05D003896 ORTHO05D004517 1.1e-31 140.2 74 79.7
Medtr2g008070 Medicago truncatula HOM05D003896 ORTHO05D004517 1.1e-31 140.2 69 88.4
BcaB03g13075 Brassica carinata HOM05D003896 ORTHO05D004517 1.4e-31 139.8 70 85.7
Sc02g0004100 Simmondsia chinensis HOM05D003896 ORTHO05D004517 1.4e-31 139.8 70 88.6
TPR.G19749 Trifolium pratense HOM05D003896 ORTHO05D004517 1.4e-31 139.8 68 85.3
Dinv01060 Davidia involucrata HOM05D003896 ORTHO05D004517 3.1e-31 138.7 70 87.1
TAR381G0439 Trochodendron aralioides HOM05D003896 ORTHO05D004517 3.1e-31 138.7 62 95.2
BolC8t52063H Brassica oleracea HOM05D003896 ORTHO05D004517 4.0e-31 138.3 69 85.5
FAN12G2386 Fragaria x ananassa HOM05D003896 ORTHO05D004517 4.0e-31 138.3 70 85.7
HanXRQChr11g0337591 Helianthus annuus HOM05D003896 ORTHO05D004517 4.0e-31 138.3 70 82.9
vmacro22914 Vaccinium macrocarpon HOM05D003896 ORTHO05D004517 4.0e-31 138.3 75 81.3
A02p31670 Brassica napus HOM05D003896 ORTHO05D004517 5.2e-31 137.9 92 70.7
BraA02t08170Z Brassica rapa HOM05D003896 ORTHO05D004517 5.2e-31 137.9 81 75.3
Duzib132G0061 Durio zibethinus HOM05D003896 ORTHO05D004517 5.2e-31 137.9 70 85.7
C02p49010 Brassica napus HOM05D003896 ORTHO05D004517 6.8e-31 137.5 91 70.3
BolC2t10995H Brassica oleracea HOM05D003896 ORTHO05D004517 6.8e-31 137.5 70 85.7
Thhalv10001040m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 6.8e-31 137.5 72 86.1
Gohir.A01G001400 Gossypium hirsutum HOM05D003896 ORTHO05D004517 6.8e-31 137.5 70 84.3
Gohir.A12G033300 Gossypium hirsutum HOM05D003896 ORTHO05D004517 6.8e-31 137.5 70 84.3
Gohir.D12G039500 Gossypium hirsutum HOM05D003896 ORTHO05D004517 6.8e-31 137.5 70 84.3
Duzib248G1617 Durio zibethinus HOM05D003896 ORTHO05D004517 8.9e-31 137.1 70 82.9
Aqoxy5G02118 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 1.5e-30 136.3 68 89.7
Cpa.g.sc2.46 Carica papaya HOM05D003896 ORTHO05D004517 1.5e-30 136.3 69 85.5
CARHR143640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 2.0e-30 136.0 70 84.3
CiPaw.06G150500 Carya illinoinensis HOM05D003896 ORTHO05D004517 2.0e-30 136.0 70 85.7
CDE04G0116 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 2.0e-30 136.0 70 85.7
AUR62035137 Chenopodium quinoa HOM05D003896 ORTHO05D004517 2.6e-30 135.6 71 83.1
FAN03G2302 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.6e-30 135.6 70 84.3
Os11g0162200 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 2.6e-30 135.6 70 80.0
Potri.005G190901 Populus trichocarpa HOM05D003896 ORTHO05D004517 2.6e-30 135.6 70 81.4
THA.LOC109117087 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 4.4e-30 134.8 70 84.3
Lsat_1_v5_gn_9_116680 Lactuca sativa HOM05D003896 ORTHO05D004517 5.8e-30 134.4 75 73.3
MD05G1023300 Malus domestica HOM05D003896 ORTHO05D004517 5.8e-30 134.4 69 84.1
Sabra05G0145900 Salix brachista HOM05D003896 ORTHO05D004517 5.8e-30 134.4 70 82.9
EL10Ac1g01528 Beta vulgaris HOM05D003896 ORTHO05D004517 7.6e-30 134.0 70 82.9
AUR62042907 Chenopodium quinoa HOM05D003896 ORTHO05D004517 1.3e-29 133.3 70 82.9
FvH4_7g02900 Fragaria vesca HOM05D003896 ORTHO05D004517 1.3e-29 133.3 70 85.7
A06p11120 Brassica napus HOM05D003896 ORTHO05D004517 2.9e-29 132.1 68 82.4
BraA06t24292Z Brassica rapa HOM05D003896 ORTHO05D004517 4.9e-29 131.3 68 80.9
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 4.9e-29 131.3 68 77.9
Sc26g0002640 Simmondsia chinensis HOM05D003896 ORTHO05D004517 4.9e-29 131.3 70 81.4
Manes.18G073709 Manihot esculenta HOM05D003896 ORTHO05D004517 6.4e-29 131.0 70 81.4
Manes.18G090900 Manihot esculenta HOM05D003896 ORTHO05D004517 6.4e-29 131.0 70 81.4
Atru.chr13.2169 Acer truncatum HOM05D003896 ORTHO05D004517 8.4e-29 130.6 70 78.6
FAN08G0225 Fragaria x ananassa HOM05D003896 ORTHO05D004517 8.4e-29 130.6 59 93.2
Nitab4.5_0004027g0040 Nicotiana tabacum HOM05D003896 ORTHO05D004517 8.4e-29 130.6 70 80.0
FAN06G4594 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.1e-28 130.2 70 84.3
Prupe.8G028000 Prunus persica HOM05D003896 ORTHO05D004517 1.9e-28 129.4 70 81.4
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 1.9e-28 129.4 60 91.7
TWI34G0745 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 1.9e-28 129.4 70 80.0
C05p13240 Brassica napus HOM05D003896 ORTHO05D004517 2.4e-28 129.0 61 88.5
GSVIVG01034509001 Vitis vinifera HOM05D003896 ORTHO05D004517 2.4e-28 129.0 69 79.7
Gorai.002G001600 Gossypium raimondii HOM05D003896 ORTHO05D004517 3.2e-28 128.6 61 88.5
TAR625G1245 Trochodendron aralioides HOM05D003896 ORTHO05D004517 3.2e-28 128.6 61 88.5
Nitab4.5_0000078g0350 Nicotiana tabacum HOM05D003896 ORTHO05D004517 4.2e-28 128.3 69 79.7
BcaB02g06577 Brassica carinata HOM05D003896 ORTHO05D004517 5.4e-28 127.9 64 87.5
Peaxi162Scf00067g02527 Petunia axillaris HOM05D003896 ORTHO05D004517 5.4e-28 127.9 70 80.0
Thhalv10009667m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 7.1e-28 127.5 61 86.9
A09p61560 Brassica napus HOM05D003896 ORTHO05D004517 9.3e-28 127.1 96 63.5
BraA09t41529Z Brassica rapa HOM05D003896 ORTHO05D004517 9.3e-28 127.1 96 63.5
HanXRQChr11g0337581 Helianthus annuus HOM05D003896 ORTHO05D004517 9.3e-28 127.1 68 79.4
Solyc09g074870.4 Solanum lycopersicum HOM05D003896 ORTHO05D004517 9.3e-28 127.1 74 74.3
Thecc.08G150500 Theobroma cacao HOM05D003896 ORTHO05D004517 9.3e-28 127.1 70 75.7
Hma1.2p1_1800F.1_g302950 Hydrangea macrophylla HOM05D003896 ORTHO05D004517 1.2e-27 126.7 68 80.9
PSO210G7830 Papaver somniferum HOM05D003896 ORTHO05D004517 2.1e-27 125.9 70 78.6
PSO238G0030 Papaver somniferum HOM05D003896 ORTHO05D004517 2.1e-27 125.9 70 78.6
Ciclev10002923m.g Citrus clementina HOM05D003896 ORTHO05D004517 2.7e-27 125.6 70 78.6
Oeu012724.1 Olea europaea HOM05D003896 ORTHO05D004517 2.7e-27 125.6 70 77.1
FAN07G2777 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.5e-27 125.2 61 85.2
AT2G01090 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 6.0e-27 124.4 61 85.2
Gorai.008G041200 Gossypium raimondii HOM05D003896 ORTHO05D004517 6.0e-27 124.4 59 86.4
C08p45150 Brassica napus HOM05D003896 ORTHO05D004517 1.0e-26 123.6 60 85.0
PGSC0003DMG400011391 Solanum tuberosum HOM05D003896 ORTHO05D004517 1.0e-26 123.6 70 74.3
unitig_578.g15948 Utricularia gibba HOM05D003896 ORTHO05D004517 1.3e-26 123.2 75 73.3
Sopen09g029690 Solanum pennellii HOM05D003896 ORTHO05D004517 2.3e-26 122.5 70 75.7
AagrBONN_evm.TU.Sc2ySwM_228.2620 Anthoceros agrestis HOM05D003896 ORTHO05D004517 3.9e-26 121.7 68 76.5
Migut.N01017 Erythranthe guttata HOM05D003896 ORTHO05D004517 5.1e-26 121.3 74 68.9
Solyc09g150155.1 Solanum lycopersicum HOM05D003896 ORTHO05D004517 6.6e-26 120.9 74 70.3
CBR_g10999 Chara braunii HOM05D003896 ORTHO05D004517 1.5e-25 119.8 72 73.6
CAN.G339.37 Capsicum annuum HOM05D003896 ORTHO05D004517 1.9e-25 119.4 69 72.5
Migut.B00649 Erythranthe guttata HOM05D003896 ORTHO05D004517 2.5e-25 119.0 69 73.9
SalBow6G5306 Salvia bowleyana HOM05D003896 ORTHO05D004517 2.5e-25 119.0 67 74.6
Duzib116G0919 Durio zibethinus HOM05D003896 ORTHO05D004517 3.3e-25 118.6 70 72.9
Peaxi162Scf00152g01234 Petunia axillaris HOM05D003896 ORTHO05D004517 5.6e-25 117.9 99 57.6
Mapoly0020s0072 Marchantia polymorpha HOM05D003896 ORTHO05D004517 2.1e-24 115.9 67 70.1
Lsat_1_v5_gn_7_79760 Lactuca sativa HOM05D003896 ORTHO05D004517 1.4e-23 113.2 76 63.2
Gorai.013G108600 Gossypium raimondii HOM05D003896 ORTHO05D004517 1.8e-23 112.8 70 71.4
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 2.4e-23 112.5 70 72.9
Gohir.A02G111100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.4e-23 112.5 70 70.0
Zm00001eb202390 Zea mays HOM05D003896 ORTHO05D004517 4.0e-23 111.7 57 77.2
Gohir.D03G062900 Gossypium hirsutum HOM05D003896 ORTHO05D004517 5.3e-23 111.3 70 70.0
Pp3c26_10210 Physcomitrium patens HOM05D003896 ORTHO05D004517 9.0e-23 110.5 64 73.4
Pp3c26_10390 Physcomitrium patens HOM05D003896 ORTHO05D004517 9.0e-23 110.5 64 73.4
CAN.G339.36 Capsicum annuum HOM05D000541 ORTHO05D000137 2.6e-22 109.0 60 75.0
Nitab4.5_0005474g0030 Nicotiana tabacum HOM05D003896 ORTHO05D004517 5.8e-22 107.8 60 71.7
Zm00001eb139450 Zea mays HOM05D003896 ORTHO05D004517 7.6e-22 107.5 58 75.9
CBR_g10998 Chara braunii HOM05D016306 ORTHO05D018315 4.9e-21 104.8 71 64.8
PRCOL_00005271 Prasinoderma coloniale HOM05D003896 ORTHO05D004517 2.4e-20 102.4 68 61.8
MCO16G078 Micromonas commoda HOM05D003896 ORTHO05D004517 4.6e-19 98.2 68 61.8
Nitab4.5_0013344g0010 Nicotiana tabacum HOM05D003896 ORTHO05D004517 6.0e-19 97.8 49 73.5
Pp3c19_20470 Physcomitrium patens HOM05D003896 ORTHO05D004517 6.0e-19 97.8 57 64.9
Duzib132G0328 Durio zibethinus HOM05D003896 ORTHO05D004517 6.6e-18 94.4 42 92.9
ClCG05G009840 Citrullus lanatus HOM05D003896 ORTHO05D004517 1.1e-17 93.6 41 92.7
Atru.chr6.943 Acer truncatum HOM05D003896 ORTHO05D004517 1.5e-17 93.2 41 92.7
SMO117G0126 Selaginella moellendorffii HOM05D003896 ORTHO05D004517 9.6e-17 90.5 58 62.1
Thhalv10028069m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 1.5e-14 83.2 43 86.0
Thhalv10029056m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 1.5e-14 83.2 43 86.0
FAN22G1408 Fragaria x ananassa HOM05D003896 ORTHO05D004517 4.5e-14 81.6 43 81.4
PGSC0003DMG400011392 Solanum tuberosum HOM05D003896 ORTHO05D004517 3.8e-13 78.6 51 62.7
Zm00001eb181710 Zea mays HOM05D003896 ORTHO05D004517 4.2e-12 75.1 70 54.3
Zm00001eb243140 Zea mays HOM05D003896 ORTHO05D004517 7.9e-11 70.9 70 51.4
unitig_8.g2965 Utricularia gibba HOM05D003896 ORTHO05D004517 1.8e-10 69.7 34 73.5
COL.COLO4_17923 Corchorus olitorius HOM05D003896 ORTHO05D004517 3.0e-10 68.9 36 80.6
arahy.Tifrunner.gnm1.ann1.13ME4F Arachis hypogaea HOM05D000724 ORTHO05D015426 8.7e-10 67.4 50 60.0
Os02g0541700 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 1.5e-09 66.6 70 50.0
Cfa005572 Carpinus fangiana HOM05D003896 ORTHO05D004517 1.8e-07 59.7 32 87.5


User provided reference genes

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