Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 1.3e-182 642.9 326 100.0
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 4.5e-154 548.1 326 84.0
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 5.9e-154 547.7 326 85.3
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 1.0e-150 537.0 324 83.0
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 6.7e-150 534.3 326 82.5
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 7.2e-144 514.2 313 82.1
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 9.4e-144 513.8 326 79.1
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.6e-143 513.1 353 76.5
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 3.5e-138 495.4 325 75.7
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.5e-136 489.2 347 73.5
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 9.7e-133 477.2 324 73.5
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 9.7e-133 477.2 325 74.2
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 1.4e-131 473.4 324 71.9
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 5.3e-131 471.5 323 72.8
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 1.2e-130 470.3 326 72.7
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 2.0e-130 469.5 310 75.2
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 1.7e-129 466.5 310 74.8
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.5e-129 464.5 327 74.9
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 2.7e-127 459.1 329 71.7
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 1.4e-126 456.8 326 72.1
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 1.4e-126 456.8 322 71.7
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.3e-126 456.1 324 70.7
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 2.3e-126 456.1 325 70.2
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 4.0e-126 455.3 330 70.6
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 5.2e-126 454.9 327 69.1
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 5.2e-126 454.9 324 69.4
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 8.8e-126 454.1 324 70.7
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 1.5e-125 453.4 320 70.0
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 2.0e-125 453.0 310 72.6
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 9.8e-125 450.7 310 72.3
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 9.8e-125 450.7 326 69.6
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 1.3e-124 450.3 322 68.3
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 1.3e-124 450.3 335 68.7
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 1.3e-124 450.3 317 70.7
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 1.7e-124 449.9 321 70.7
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 2.8e-124 449.1 310 72.3
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 6.3e-124 448.0 321 68.8
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 1.4e-123 446.8 328 69.5
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 1.8e-123 446.4 323 70.3
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 1.8e-123 446.4 320 69.7
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 1.8e-123 446.4 325 69.5
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 3.1e-123 445.7 309 73.1
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 4.1e-123 445.3 322 68.0
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 5.4e-123 444.9 306 73.5
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 9.1e-123 444.1 324 68.8
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 1.2e-122 443.7 326 69.3
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 1.2e-122 443.7 311 71.4
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.6e-122 443.4 324 66.0
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 3.5e-122 442.2 347 65.7
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 3.5e-122 442.2 324 67.9
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 4.5e-122 441.8 323 68.4
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 1.7e-121 439.9 350 66.9
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 2.3e-121 439.5 324 68.2
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 2.3e-121 439.5 327 69.7
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 2.9e-121 439.1 306 72.2
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 2.9e-121 439.1 314 69.4
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 1.9e-120 436.4 323 67.8
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 4.2e-120 435.3 324 67.9
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 4.2e-120 435.3 320 68.1
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 7.2e-120 434.5 319 67.4
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 7.2e-120 434.5 313 69.0
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 9.5e-120 434.1 353 63.7
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 2.1e-119 433.0 320 67.8
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 2.8e-119 432.6 266 82.3
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 4.7e-119 431.8 324 67.0
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 4.0e-118 428.7 323 66.3
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 1.2e-117 427.2 312 67.0
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.2e-117 427.2 392 58.4
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 1.2e-117 427.2 323 65.3
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 1.5e-117 426.8 311 69.1
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 1.5e-117 426.8 321 67.9
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 1.5e-117 426.8 323 65.9
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 9.8e-117 424.1 318 69.5
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 2.8e-116 422.5 312 68.3
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 8.3e-116 421.0 282 76.2
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 1.4e-115 420.2 307 69.4
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 2.4e-115 419.5 309 69.6
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 4.1e-115 418.7 319 64.6
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 9.2e-115 417.5 253 80.6
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 1.6e-114 416.8 314 65.0
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 3.5e-114 415.6 315 68.6
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 7.8e-114 414.5 310 67.4
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 1.0e-113 414.1 310 66.5
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 3.8e-113 412.1 310 68.1
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 5.0e-113 411.8 307 67.4
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 8.6e-113 411.0 320 66.2
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 1.9e-112 409.8 328 67.1
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 3.3e-112 409.1 275 75.3
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 5.6e-112 408.3 307 67.8
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 7.3e-112 407.9 368 58.7
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 7.3e-112 407.9 309 66.7
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 1.2e-111 407.1 323 63.8
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 8.0e-111 404.4 307 66.4
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 1.4e-110 403.7 311 66.9
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 2.3e-110 402.9 291 69.8
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.0e-110 402.1 323 66.6
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 5.7e-109 398.3 277 71.5
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 7.5e-109 397.9 335 61.8
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 9.8e-109 397.5 310 64.8
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 9.8e-109 397.5 307 66.1
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 3.7e-108 395.6 304 66.1
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 1.1e-107 394.0 344 58.7
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 9.2e-107 391.0 310 64.2
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 2.7e-106 389.4 304 65.1
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 3.0e-105 386.0 292 68.5
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 8.6e-105 384.4 276 69.2
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 1.1e-104 384.0 269 70.6
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 4.3e-104 382.1 269 69.5
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 8.9e-102 374.4 278 68.0
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 2.6e-101 372.9 231 82.3
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 9.8e-101 370.9 309 62.1
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 1.1e-99 367.5 331 59.5
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 3.2e-99 365.9 306 61.1
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 4.1e-99 365.5 323 59.8
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 7.0e-99 364.8 324 59.6
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 9.2e-99 364.4 304 60.5
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 1.9e-96 356.7 303 61.7
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 7.3e-96 354.8 304 60.5
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 3.6e-95 352.4 320 58.1
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 4.7e-95 352.1 247 67.2
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 6.8e-94 348.2 303 57.1
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 1.9e-91 340.1 315 57.1
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 2.1e-90 336.7 311 58.5
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 2.3e-89 333.2 314 54.5
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 1.5e-85 320.5 457 44.6
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 3.3e-80 302.8 232 65.5
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 3.6e-79 299.3 314 52.9
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.3e-76 290.8 211 73.5
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 3.0e-73 279.6 203 67.5
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 2.4e-70 270.0 307 49.8
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 4.6e-66 255.8 186 68.8
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 1.8e-65 253.8 172 75.0
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 7.6e-61 238.4 188 66.0
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 2.9e-60 236.5 180 67.8
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 7.1e-59 231.9 165 70.3
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 9.3e-59 231.5 183 67.2
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.2e-58 231.1 198 64.1
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 2.7e-58 229.9 221 54.8
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 1.3e-57 227.6 345 41.4
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 1.8e-57 227.3 171 69.0
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 3.0e-57 226.5 267 49.8
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 5.1e-57 225.7 214 57.9
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 1.6e-55 220.7 266 47.0
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 3.1e-54 216.5 148 73.0
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.2e-53 214.5 237 51.9
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 7.6e-53 211.8 196 54.6
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 1.1e-51 208.0 151 69.5
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 3.5e-50 203.0 289 42.9
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 1.3e-49 201.1 142 70.4
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 7.4e-48 195.3 216 50.5
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 1.1e-46 191.4 139 66.9
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 2.6e-45 186.8 132 70.5
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 1.1e-43 181.4 309 42.4
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 2.5e-43 180.3 121 71.1
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 1.0e-41 174.9 117 71.8
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 5.3e-38 162.5 153 56.2
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 1.7e-36 157.5 179 43.0
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 7.2e-35 152.1 106 75.5
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 6.3e-31 139.0 178 46.6
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 9.4e-27 125.2 114 57.0
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 3.6e-26 123.2 146 48.6
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 9.7e-24 115.2 116 57.8
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 2.8e-23 113.6 123 47.2
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 5.9e-21 105.9 85 68.2
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 7.2e-19 99.0 84 63.1
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 8.0e-18 95.5 62 71.0
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 3.7e-15 86.7 66 68.2
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 1.2e-13 81.6 75 57.3
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 3.5e-13 80.1 90 45.6
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 7.7e-13 79.0 66 65.2
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 5.5e-11 72.8 92 44.6
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 7.2e-11 72.4 44 79.5
Atru.chr5.2810 Acer truncatum HOM05D003898 ORTHO05D004642 4.4e-08 63.2 56 55.4
arahy.Tifrunner.gnm1.ann1.8FT8UW Arachis hypogaea HOM05D003898 ORTHO05D000721 3.7e-07 60.1 50 54.0
arahy.Tifrunner.gnm1.ann1.JWT6XR Arachis hypogaea HOM05D003898 ORTHO05D004642 3.7e-07 60.1 50 54.0
Gohir.D02G117850 Gossypium hirsutum HOM05D034602 ORTHO05D048040 1.4e-06 58.2 36 75.0
FAN03G2149 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.8e-06 57.8 38 71.1
Gorai.007G225200 Gossypium raimondii HOM05D034602 ORTHO05D048040 1.8e-06 57.8 34 79.4
FAN06G2515 Fragaria x ananassa HOM05D057127 ORTHO05D208480 9.1e-06 55.5 42 69.0


User provided reference genes

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