Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 1.1e-306 1055.8 547 100.0
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 3.0e-251 871.7 568 80.8
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 4.3e-226 788.1 569 72.9
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 7.4e-226 787.3 569 72.9
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.6e-225 786.2 569 72.9
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.5e-221 772.3 568 71.8
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 1.5e-218 763.1 570 71.9
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 2.1e-204 716.1 572 66.8
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 8.2e-201 704.1 568 66.2
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 1.6e-199 699.9 568 64.3
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 2.6e-199 699.1 569 64.1
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 3.8e-198 695.3 568 63.9
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 1.1e-197 693.7 573 63.7
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 2.1e-196 689.5 569 63.1
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 4.7e-196 688.3 572 63.8
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 5.3e-192 674.9 567 62.1
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 1.2e-191 673.7 570 61.9
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 2.0e-191 672.9 567 63.0
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 2.7e-191 672.5 570 62.8
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 1.0e-187 660.6 567 61.7
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 2.3e-187 659.4 567 61.2
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 3.7e-185 652.1 569 59.4
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 3.7e-185 652.1 597 61.0
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 7.0e-184 647.9 567 60.8
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 6.1e-180 634.8 570 58.6
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 6.8e-179 631.3 569 58.7
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 5.7e-178 628.2 567 59.1
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 7.5e-178 627.9 567 59.3
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 3.7e-177 625.5 569 58.5
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 7.0e-176 621.3 569 58.2
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 2.0e-175 619.8 573 58.3
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 4.5e-175 618.6 567 56.8
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 5.9e-175 618.2 571 59.0
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 1.3e-174 617.1 567 58.7
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 1.3e-174 617.1 567 58.2
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 1.9e-173 613.2 518 62.2
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 2.8e-172 609.4 569 57.6
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 1.4e-171 607.1 558 58.2
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 1.5e-170 603.6 550 58.0
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 3.4e-170 602.4 567 56.1
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 7.5e-170 601.3 557 56.9
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 2.9e-169 599.4 557 56.7
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 3.7e-169 599.0 559 56.9
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 8.3e-169 597.8 558 57.9
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 8.3e-169 597.8 559 56.9
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 8.3e-169 597.8 559 56.9
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 1.1e-168 597.4 560 56.6
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 7.0e-168 594.7 557 57.3
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 7.0e-168 594.7 566 57.2
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 9.2e-168 594.3 605 55.0
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 1.2e-167 594.0 555 56.6
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 1.6e-167 593.6 528 59.3
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 2.7e-167 592.8 576 56.8
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 1.7e-166 590.1 567 54.5
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 2.3e-166 589.7 571 54.8
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 5.0e-166 588.6 558 57.7
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 8.6e-166 587.8 567 55.9
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 1.1e-165 587.4 571 54.1
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 2.5e-165 586.3 578 55.7
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 4.3e-165 585.5 568 55.5
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 9.5e-165 584.3 528 60.0
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 1.6e-164 583.6 567 53.8
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 8.0e-164 581.3 568 55.6
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 1.0e-163 580.9 607 53.0
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 6.8e-163 578.2 572 54.0
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 9.2e-160 567.8 557 56.0
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 6.6e-158 561.6 570 55.3
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 1.9e-157 560.1 530 60.8
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 2.5e-157 559.7 544 55.0
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 5.6e-157 558.5 575 54.6
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 3.6e-156 555.8 464 62.9
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 3.1e-155 552.7 570 51.8
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 8.3e-153 544.7 574 51.9
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 1.4e-152 543.9 574 53.3
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 5.1e-150 535.4 512 56.8
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 2.5e-149 533.1 532 53.2
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 1.6e-148 530.4 569 51.1
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 4.7e-148 528.9 545 52.5
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 6.2e-148 528.5 571 50.8
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 5.2e-147 525.4 557 52.1
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 2.0e-146 523.5 570 50.5
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 6.4e-145 518.5 469 59.5
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 1.4e-144 517.3 416 63.7
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 2.4e-144 516.5 476 58.0
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 2.4e-144 516.5 610 50.0
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 3.2e-144 516.2 416 63.5
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 9.2e-144 514.6 571 50.8
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 5.1e-142 508.8 385 69.1
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 3.6e-140 502.7 568 50.7
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 1.1e-136 491.1 567 46.6
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 3.5e-135 486.1 572 48.1
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 3.8e-129 466.1 570 45.6
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 3.0e-126 456.4 562 46.8
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 8.7e-126 454.9 572 46.7
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 2.8e-124 449.9 479 52.2
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 1.6e-116 424.1 383 57.4
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 1.0e-113 414.8 582 44.0
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 2.9e-113 413.3 559 45.4
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 9.3e-104 381.7 471 46.5
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 2.0e-90 337.4 303 58.4
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 5.5e-72 276.2 495 39.6
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 5.5e-72 276.2 495 39.6
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 3.0e-70 270.4 540 35.4
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 1.2e-66 258.5 311 50.5
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 2.3e-65 254.2 567 28.9
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 1.6e-63 248.1 563 29.7
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 1.5e-61 241.5 379 41.7
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 9.5e-56 222.2 373 41.0
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 4.0e-54 216.9 402 32.3
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.1e-51 208.8 261 44.1
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 9.5e-48 195.7 565 26.5
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 6.2e-47 193.0 235 46.8
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 8.0e-47 192.6 235 46.8
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 5.0e-41 173.3 143 61.5
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 2.1e-39 167.9 164 55.5
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 1.5e-37 161.8 164 53.7
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 2.6e-37 161.0 130 65.4
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 4.4e-37 160.2 239 47.3
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 6.0e-34 149.8 142 55.6
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 1.9e-32 144.8 143 52.4
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 9.9e-29 132.5 136 53.7
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 9.9e-29 132.5 327 33.6
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 1.3e-28 132.1 222 37.8
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 2.7e-26 124.4 82 73.2
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 2.7e-26 124.4 117 49.6
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 3.5e-26 124.0 89 66.3
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 1.3e-25 122.1 113 53.1
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.3e-25 122.1 242 37.6
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 4.7e-23 113.6 333 24.3
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 2.9e-20 104.4 327 28.1
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 3.0e-17 94.4 118 40.7
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 1.9e-16 91.7 118 39.0
SHI18507 Sapria himalayana HOM05D004744 ORTHO05D005655 3.6e-15 87.4 87 57.5
SEGI_08303 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.5e-13 82.0 66 57.6
C08p02720 Brassica napus HOM05D004744 ORTHO05D005655 3.4e-13 80.9 77 53.2
TWI63G1552 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 1.9e-11 75.1 92 46.7
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 7.1e-11 73.2 144 31.9
BcaC06g36552 Brassica carinata HOM05D016909 ORTHO05D027203 9.3e-11 72.8 122 41.0
unitig_748.g7861 Utricularia gibba HOM05D004744 ORTHO05D005655 9.3e-11 72.8 74 51.4
CsaV3_4G016180 Cucumis sativus L. HOM05D004744 ORTHO05D005655 2.1e-10 71.6 44 72.7
C07p02990 Brassica napus HOM05D016909 ORTHO05D027203 1.9e-08 65.1 118 39.8
CsaV3_5G015120 Cucumis sativus L. HOM05D004744 ORTHO05D005655 1.3e-07 62.4 34 85.3
unitig_60.g25872 Utricularia gibba HOM05D004744 ORTHO05D005655 1.6e-07 62.0 84 44.0
Lsat_1_v5_gn_2_25721 Lactuca sativa HOM05D004744 ORTHO05D005655 1.4e-06 58.9 197 26.4
TWI34G1186 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 1.8e-06 58.5 40 65.0
FAN15G0776 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.4e-06 58.2 36 72.2
SEGI_21256 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 6.9e-06 56.6 74 41.9


User provided reference genes

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