Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G419300 Prunus persica HOM05D005317 ORTHO05D005146 3.8e-84 314.7 148 100.0
Manes.05G183500 Manihot esculenta HOM05D005317 ORTHO05D005146 7.3e-27 124.4 148 52.0
COL.COLO4_28461 Corchorus olitorius HOM05D005317 ORTHO05D005146 2.3e-25 119.4 149 46.3
TAR381G0867 Trochodendron aralioides HOM05D005317 ORTHO05D005146 4.0e-25 118.6 146 48.6
Haze_22391 Corylus avellana HOM05D005317 ORTHO05D005146 2.0e-24 116.3 176 40.9
Oeu053645.1 Olea europaea HOM05D005317 ORTHO05D005146 3.4e-24 115.5 158 44.3
Oeu047228.1 Olea europaea HOM05D005317 ORTHO05D005146 9.8e-24 114.0 159 43.4
Aqoxy6G02455 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 4.9e-23 111.7 159 45.3
Potri.014G013000 Populus trichocarpa HOM05D005317 ORTHO05D005146 1.1e-22 110.5 155 48.4
Thecc.08G084700 Theobroma cacao HOM05D005317 ORTHO05D005146 1.9e-22 109.8 148 43.2
Sabra14G0007800 Salix brachista HOM05D005317 ORTHO05D005146 3.2e-22 109.0 155 47.1
TAR628G1097 Trochodendron aralioides HOM05D005317 ORTHO05D005146 3.2e-22 109.0 146 45.9
GSVIVG01009301001 Vitis vinifera HOM05D005317 ORTHO05D005146 5.4e-22 108.2 144 48.6
Cfa013739 Carpinus fangiana HOM05D005317 ORTHO05D005146 7.0e-22 107.8 148 48.0
TAR376G0587 Trochodendron aralioides HOM05D005317 ORTHO05D005146 1.3e-20 103.6 147 46.9
Gorai.010G027300 Gossypium raimondii HOM05D005317 ORTHO05D005146 3.9e-20 102.1 153 43.8
CiPaw.08G052300 Carya illinoinensis HOM05D005317 ORTHO05D005146 5.1e-20 101.7 139 46.0
Gohir.A06G025600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.1e-19 100.5 153 41.8
Eucgr.F00095 Eucalyptus grandis HOM05D005317 ORTHO05D005146 1.5e-19 100.1 148 40.5
Gohir.D06G022700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.5e-19 99.4 153 43.1
Lj5g0002019 Lotus japonicus HOM05D005317 ORTHO05D005146 2.5e-19 99.4 154 44.8
Rhsim07G0217500 Rhododendron simsii HOM05D005317 ORTHO05D005146 2.5e-19 99.4 152 44.7
Ciclev10029376m.g Citrus clementina HOM05D005317 ORTHO05D005146 3.3e-19 99.0 177 37.3
VMungo0647G1960 Vigna mungo HOM05D005317 ORTHO05D005146 7.3e-19 97.8 149 41.6
Actinidia29632 Actinidia chinensis HOM05D005317 ORTHO05D005146 1.2e-18 97.1 95 53.7
Actinidia10221 Actinidia chinensis HOM05D005317 ORTHO05D005146 2.8e-18 95.9 99 50.5
Nn5g30662 Nelumbo nucifera HOM05D005317 ORTHO05D005146 2.8e-18 95.9 140 41.4
FAN27G2237 Fragaria x ananassa HOM05D030376 ORTHO05D005146 3.6e-18 95.5 172 43.0
DCAR_020064 Daucus carota HOM05D005317 ORTHO05D005146 8.1e-18 94.4 146 42.5
SalBow4G3082 Salvia bowleyana HOM05D005317 ORTHO05D005146 8.1e-18 94.4 153 40.5
Phvul.001G030800 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 1.1e-17 94.0 149 40.9
Lj4C75G10 Lonicera japonica HOM05D002048 ORTHO05D002146 1.4e-17 93.6 93 53.8
FAN15G0380 Fragaria x ananassa HOM05D030376 ORTHO05D005146 5.2e-17 91.7 175 42.3
Lalb_Chr09g0335521 Lupinus albus HOM05D005317 ORTHO05D005146 8.9e-17 90.9 151 36.4
Cpa.g.c31093.6 Carica papaya HOM05D005317 ORTHO05D005146 1.2e-16 90.5 150 38.7
Psat0ss26165g0240 Pisum sativum HOM05D005317 ORTHO05D005146 1.5e-16 90.1 153 36.6
Cc10_g07630 Coffea canephora HOM05D005317 ORTHO05D005146 2.6e-16 89.4 163 39.3
TPR.G13020 Trifolium pratense HOM05D005317 ORTHO05D005146 3.4e-16 89.0 152 38.2
Sopen04g031150 Solanum pennellii HOM05D005317 ORTHO05D005146 5.8e-16 88.2 145 40.7
CSS0048752 Camellia sinensis var. sinensis HOM05D005317 ORTHO05D005146 7.5e-16 87.8 152 40.8
Migut.C00473 Erythranthe guttata HOM05D005317 ORTHO05D005146 9.9e-16 87.4 157 40.1
Gohir.D05G215300 Gossypium hirsutum HOM05D005317 ORTHO05D005146 9.9e-16 87.4 145 41.4
Actinidia16411 Actinidia chinensis HOM05D005317 ORTHO05D005146 2.9e-15 85.9 137 39.4
Medtr4g097480 Medicago truncatula HOM05D005317 ORTHO05D005146 2.9e-15 85.9 155 38.7
Lj4g0026806 Lotus japonicus HOM05D005317 ORTHO05D005146 3.7e-15 85.5 160 37.5
MBI16_g41241_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 4.9e-15 85.1 140 42.1
Medtr1g017500 Medicago truncatula HOM05D005317 ORTHO05D005146 4.9e-15 85.1 151 37.1
Glyma.06G048700 Glycine max HOM05D005317 ORTHO05D005146 6.4e-15 84.7 151 37.7
Atru.chr13.870 Acer truncatum HOM05D005317 ORTHO05D005146 8.3e-15 84.3 146 39.0
FAN20G0770 Fragaria x ananassa HOM05D030376 ORTHO05D005146 1.1e-14 84.0 167 41.9
QL06p038960 Quercus lobata HOM05D005317 ORTHO05D005146 1.9e-14 83.2 151 38.4
Phvul.003G233000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 2.4e-14 82.8 161 37.3
Thecc.01G076000 Theobroma cacao HOM05D005317 ORTHO05D005146 2.4e-14 82.8 143 39.2
CiPaw.07G172100 Carya illinoinensis HOM05D005317 ORTHO05D005146 4.1e-14 82.0 135 42.2
Glyma.05G108400 Glycine max HOM05D005317 ORTHO05D005146 5.4e-14 81.6 162 37.7
TPR.G3735 Trifolium pratense HOM05D005317 ORTHO05D005146 7.1e-14 81.3 159 36.5
Aqoxy6G02509 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 1.2e-13 80.5 123 43.9
Psat6g017280 Pisum sativum HOM05D005317 ORTHO05D005146 1.6e-13 80.1 141 39.0
Haze_15027 Corylus avellana HOM05D005317 ORTHO05D005146 2.1e-13 79.7 147 38.1
Oeu014288.1 Olea europaea HOM05D005317 ORTHO05D005146 3.5e-13 79.0 151 34.4
Prupe.6G217200 Prunus persica HOM05D005317 ORTHO05D005146 7.8e-13 77.8 160 38.1
ATR0739G163 Amborella trichopoda HOM05D005317 ORTHO05D005146 1.0e-12 77.4 176 36.9
Gorai.009G222000 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.7e-12 76.6 149 36.9
Manes.05G183600 Manihot esculenta HOM05D005317 ORTHO05D005146 3.9e-12 75.5 156 34.6
Gohir.D12G076800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 6.6e-12 74.7 137 41.6
Gorai.008G085600 Gossypium raimondii HOM05D005317 ORTHO05D005146 6.6e-12 74.7 137 41.6
RcHm_v2.0_Chr2g0108721 Rosa chinensis HOM05D005317 ORTHO05D005146 8.6e-12 74.3 169 33.7
VMungo0251G0145 Vigna mungo HOM05D005317 ORTHO05D005146 1.9e-11 73.2 150 32.7
ClCG05G026550 Citrullus lanatus HOM05D029900 ORTHO05D005146 2.5e-11 72.8 137 40.1
Glyma.14G089084 Glycine max HOM05D005317 ORTHO05D005146 3.3e-11 72.4 153 37.3
Glyma.17G158600 Glycine max HOM05D005317 ORTHO05D005146 3.3e-11 72.4 162 35.8
Hma1.2p1_1139F.1_g260880 Hydrangea macrophylla HOM05D005317 ORTHO05D005146 3.3e-11 72.4 136 38.2
CDE07G0499 Ceratophyllum demersum HOM05D000271 ORTHO05D009467 4.3e-11 72.0 140 39.3
Ciclev10026641m.g Citrus clementina HOM05D005317 ORTHO05D005146 4.3e-11 72.0 153 37.3
FAN23G2069 Fragaria x ananassa HOM05D005317 ORTHO05D005146 4.3e-11 72.0 170 32.9
Manes.13G109200 Manihot esculenta HOM05D005317 ORTHO05D005146 4.3e-11 72.0 152 37.5
Gohir.A05G212000 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.6e-11 71.6 146 36.3
CDE04G2604 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 7.3e-11 71.2 155 37.4
FAN26G0581 Fragaria x ananassa HOM05D005317 ORTHO05D005146 7.3e-11 71.2 165 32.7
Gohir.A02G149800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.3e-11 71.2 140 38.6
Lalb_Chr24g0399511 Lupinus albus HOM05D005317 ORTHO05D005146 7.3e-11 71.2 133 39.8
Gohir.A12G080100 Gossypium hirsutum HOM05D005317 ORTHO05D005146 9.5e-11 70.9 138 40.6
Ciclev10027255m.g Citrus clementina HOM05D005317 ORTHO05D005146 1.6e-10 70.1 153 37.9
DCAR_009867 Daucus carota HOM05D005317 ORTHO05D005146 1.6e-10 70.1 164 34.1
FvH4_1g18210 Fragaria vesca HOM05D005317 ORTHO05D005146 1.6e-10 70.1 171 32.2
VMungo1309G2313 Vigna mungo HOM05D005317 ORTHO05D005146 1.6e-10 70.1 140 36.4
FAN28G2997 Fragaria x ananassa HOM05D005317 ORTHO05D005146 2.1e-10 69.7 170 32.4
Glyma.17G232900 Glycine max HOM05D005317 ORTHO05D005146 2.8e-10 69.3 156 35.9
PGSC0003DMG400004968 Solanum tuberosum HOM05D005317 ORTHO05D005146 2.8e-10 69.3 142 38.0
SGA_v2.0_scaffold238G43910 Striga asiatica HOM05D005317 ORTHO05D005146 2.8e-10 69.3 152 37.5
FAN19G1325 Fragaria x ananassa HOM05D005317 ORTHO05D005146 3.6e-10 68.9 171 31.6
MBI16_g06081_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 4.7e-10 68.6 88 48.9
Dinv23042 Davidia involucrata HOM05D005317 ORTHO05D005146 6.2e-10 68.2 128 39.1
Gorai.002G136100 Gossypium raimondii HOM05D005317 ORTHO05D005146 6.2e-10 68.2 133 36.8
Prupe.1G419200 Prunus persica HOM05D005317 ORTHO05D005146 6.2e-10 68.2 156 32.1
Gohir.A01G123550 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.1e-09 67.4 138 36.2
Duzib187G1956 Durio zibethinus HOM05D005317 ORTHO05D005146 1.4e-09 67.0 150 35.3
Gohir.A01G123600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.4e-09 67.0 144 35.4
Cfa004386 Carpinus fangiana HOM05D005317 ORTHO05D005146 2.4e-09 66.2 142 34.5
Sabra07G0005300 Salix brachista HOM05D005317 ORTHO05D005146 2.4e-09 66.2 152 36.2
Potri.007G007000 Populus trichocarpa HOM05D005317 ORTHO05D005146 3.1e-09 65.9 157 35.7
MELO3C016838.2 Cucumis melo HOM05D029900 ORTHO05D005146 6.8e-09 64.7 132 37.1
Actinidia11964 Actinidia chinensis HOM05D031334 ORTHO05D026410 8.9e-09 64.3 88 48.9
Atru.chr3.1057 Acer truncatum HOM05D005317 ORTHO05D005146 1.5e-08 63.5 160 33.1
MSTRG.25022 Avicennia marina HOM05D005317 ORTHO05D005146 1.5e-08 63.5 153 34.6
CiPaw.01G002200 Carya illinoinensis HOM05D005317 ORTHO05D005146 1.5e-08 63.5 150 36.0
COL.COLO4_11612 Corchorus olitorius HOM05D005317 ORTHO05D005146 1.5e-08 63.5 153 35.3
Gohir.D03G030600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.5e-08 63.5 140 36.4
Dinv26957 Davidia involucrata HOM05D005317 ORTHO05D005146 2.6e-08 62.8 114 40.4
Gorai.002G136200 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.6e-08 62.8 143 35.0
Gorai.003G032200 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.6e-08 62.8 140 33.6
SGA_v2.0_scaffold15G07499 Striga asiatica HOM05D005317 ORTHO05D005146 2.6e-08 62.8 150 29.3
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 3.4e-08 62.4 145 34.5
Eucgr.H02331 Eucalyptus grandis HOM05D005317 ORTHO05D005146 7.6e-08 61.2 153 34.6
Gohir.D01G111432 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.6e-08 61.2 144 34.0
Oeu021452.1 Olea europaea HOM05D005317 ORTHO05D005146 7.6e-08 61.2 147 30.6
Thecc.08G084600 Theobroma cacao HOM05D005317 ORTHO05D005146 9.9e-08 60.8 135 35.6
Gohir.A06G025700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.7e-07 60.1 141 35.5
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 2.9e-07 59.3 148 35.1
Gorai.010G027400 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.9e-07 59.3 143 35.7
Gohir.D06G022800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 4.9e-07 58.5 141 35.5
unitig_749.g13883 Utricularia gibba HOM05D005317 ORTHO05D005146 8.4e-07 57.8 127 34.6
COL.COLO4_28460 Corchorus olitorius HOM05D005317 ORTHO05D005146 1.9e-06 56.6 141 34.8
BcaC05g24800 Brassica carinata HOM05D011270 ORTHO05D012905 3.2e-06 55.8 88 39.8
C05p08330 Brassica napus HOM05D011270 ORTHO05D012905 3.2e-06 55.8 88 38.6
BolC5t29583H Brassica oleracea HOM05D011270 ORTHO05D012905 3.2e-06 55.8 88 38.6
Haze_22390 Corylus avellana HOM05D000071 ORTHO05D000029 3.2e-06 55.8 149 33.6
A06p06850 Brassica napus HOM05D011270 ORTHO05D012905 4.2e-06 55.5 88 38.6
BraA06t23899Z Brassica rapa HOM05D011270 ORTHO05D012905 4.2e-06 55.5 88 38.6
Gohir.A11G212400 Gossypium hirsutum HOM05D005317 ORTHO05D005146 4.2e-06 55.5 150 32.0
CsaV3_4G035270 Cucumis sativus L. HOM05D029900 ORTHO05D005146 5.4e-06 55.1 94 40.4
Gohir.D01G111366 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.4e-06 55.1 85 41.2
CARHR010290 Cardamine hirsuta HOM05D011270 ORTHO05D012905 7.1e-06 54.7 87 37.9
TPR.G13134 Trifolium pratense HOM05D014755 ORTHO05D005146 7.1e-06 54.7 143 32.9
FAN24G2816 Fragaria x ananassa HOM05D030376 ORTHO05D005146 9.2e-06 54.3 144 34.0
Lsat_1_v5_gn_3_86260 Lactuca sativa HOM05D005317 ORTHO05D005146 9.2e-06 54.3 125 36.0


User provided reference genes

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