Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 7.3e-55 216.9 100 100.0
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 6.8e-37 157.1 106 72.6
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 3.8e-35 151.4 106 70.8
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 1.2e-20 103.2 106 50.9
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 2.0e-20 102.4 103 52.4
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.0e-20 102.4 103 52.4
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 2.0e-20 102.4 103 55.3
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 2.6e-20 102.1 103 52.4
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.6e-20 102.1 103 52.4
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 4.5e-20 101.3 103 52.4
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.8e-20 100.9 104 51.9
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 1.7e-19 99.4 104 51.9
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 2.2e-19 99.0 105 53.3
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 2.2e-19 99.0 105 53.3
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 2.2e-19 99.0 105 53.3
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 2.9e-19 98.6 98 52.0
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 2.9e-19 98.6 103 51.5
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.9e-19 97.8 102 52.0
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 4.9e-19 97.8 104 49.0
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 6.4e-19 97.4 102 52.0
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 6.4e-19 97.4 103 48.5
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 6.4e-19 97.4 106 48.1
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 6.4e-19 97.4 103 49.5
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 1.1e-18 96.7 102 51.0
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.1e-18 96.7 102 51.0
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 1.1e-18 96.7 104 47.1
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 1.4e-18 96.3 100 54.0
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 1.9e-18 95.9 103 52.4
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 1.9e-18 95.9 105 50.5
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 4.2e-18 94.7 105 48.6
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.2e-18 94.7 99 53.5
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 5.4e-18 94.4 103 48.5
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 9.3e-18 93.6 108 46.3
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 9.3e-18 93.6 98 52.0
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 9.3e-18 93.6 103 49.5
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.2e-17 93.2 108 46.3
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 1.6e-17 92.8 106 48.1
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.1e-17 92.4 108 45.4
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 2.1e-17 92.4 103 47.6
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 2.7e-17 92.0 102 50.0
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 2.7e-17 92.0 103 49.5
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.7e-17 92.0 103 49.5
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 4.6e-17 91.3 103 45.6
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 4.6e-17 91.3 99 49.5
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 6.0e-17 90.9 99 47.5
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 6.0e-17 90.9 104 46.2
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 7.9e-17 90.5 104 41.3
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 7.9e-17 90.5 104 41.3
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 7.9e-17 90.5 103 45.6
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 1.0e-16 90.1 104 43.3
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 1.0e-16 90.1 105 48.6
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 1.3e-16 89.7 102 44.1
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.3e-16 89.7 103 48.5
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.3e-16 89.7 103 48.5
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 1.3e-16 89.7 103 47.6
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 1.3e-16 89.7 98 49.0
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 1.3e-16 89.7 103 46.6
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 1.8e-16 89.4 103 47.6
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 2.3e-16 89.0 104 46.2
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 3.0e-16 88.6 109 47.7
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 3.0e-16 88.6 103 45.6
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 3.9e-16 88.2 103 45.6
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 3.9e-16 88.2 103 47.6
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 3.9e-16 88.2 103 47.6
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 5.1e-16 87.8 103 46.6
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 5.1e-16 87.8 105 46.7
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 6.7e-16 87.4 105 46.7
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 6.7e-16 87.4 103 45.6
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 6.7e-16 87.4 103 47.6
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 6.7e-16 87.4 104 45.2
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 8.7e-16 87.0 109 45.0
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 8.7e-16 87.0 103 44.7
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 8.7e-16 87.0 103 45.6
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 1.1e-15 86.7 103 44.7
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 1.1e-15 86.7 103 44.7
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 1.1e-15 86.7 103 45.6
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 1.1e-15 86.7 99 48.5
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 1.5e-15 86.3 107 44.9
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 1.5e-15 86.3 101 48.5
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 1.5e-15 86.3 106 47.2
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 1.9e-15 85.9 103 45.6
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 1.9e-15 85.9 103 45.6
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.9e-15 85.9 103 45.6
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 3.3e-15 85.1 103 44.7
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 4.3e-15 84.7 103 43.7
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 5.6e-15 84.3 102 42.2
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 5.6e-15 84.3 103 44.7
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 5.6e-15 84.3 104 44.2
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 7.4e-15 84.0 105 41.0
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 7.4e-15 84.0 100 47.0
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 7.4e-15 84.0 105 43.8
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 7.4e-15 84.0 103 42.7
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 9.6e-15 83.6 99 44.4
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 9.6e-15 83.6 99 44.4
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 1.3e-14 83.2 99 44.4
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 1.3e-14 83.2 99 44.4
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 1.3e-14 83.2 103 42.7
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 1.3e-14 83.2 98 43.9
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 1.3e-14 83.2 101 41.6
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 2.1e-14 82.4 103 43.7
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 2.1e-14 82.4 103 43.7
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 2.8e-14 82.0 110 42.7
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 2.8e-14 82.0 103 44.7
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 3.7e-14 81.6 100 45.0
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 4.8e-14 81.3 103 41.7
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 4.8e-14 81.3 103 42.7
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 4.8e-14 81.3 103 42.7
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 6.2e-14 80.9 103 41.7
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 8.1e-14 80.5 103 41.7
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 8.1e-14 80.5 99 43.4
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 1.1e-13 80.1 108 39.8
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 1.1e-13 80.1 108 39.8
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 1.1e-13 80.1 99 43.4
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 1.1e-13 80.1 99 43.4
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 1.1e-13 80.1 103 40.8
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 1.1e-13 80.1 103 43.7
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 1.4e-13 79.7 103 40.8
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 1.8e-13 79.3 103 42.7
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 4.0e-13 78.2 99 42.4
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 6.9e-13 77.4 103 42.7
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 9.0e-13 77.0 96 44.8
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 9.0e-13 77.0 110 41.8
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 1.2e-12 76.6 100 44.0
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 2.0e-12 75.9 103 41.7
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 2.0e-12 75.9 103 40.8
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 2.6e-12 75.5 103 41.7
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 5.8e-12 74.3 97 43.3
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 1.3e-11 73.2 96 39.6
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 1.3e-11 73.2 99 39.4
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 1.7e-11 72.8 103 36.9
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 1.7e-11 72.8 103 36.9
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 1.7e-11 72.8 106 40.6
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 2.2e-11 72.4 90 44.4
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 3.8e-11 71.6 91 46.2
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 6.5e-11 70.9 97 41.2
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 6.5e-11 70.9 103 37.9
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 8.4e-11 70.5 91 44.0
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 1.9e-10 69.3 103 40.8
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.9e-10 69.3 105 36.2
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 2.5e-10 68.9 103 39.8
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 2.5e-10 68.9 103 35.0
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 2.5e-10 68.9 99 41.4
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 4.2e-10 68.2 103 41.7
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 5.5e-10 67.8 102 38.2
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 2.1e-09 65.9 103 38.8
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 2.1e-09 65.9 101 37.6
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 2.7e-09 65.5 103 32.0
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 1.0e-08 63.5 103 35.0
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.8e-08 62.8 91 39.6
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 3.0e-08 62.0 103 35.0
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 1.5e-07 59.7 100 32.0
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 1.5e-07 59.7 59 50.8
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 1.6e-06 56.2 62 51.6
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 2.8e-06 55.5 46 65.2


User provided reference genes

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