Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G226700 Prunus persica HOM05D007500 ORTHO05D009197 6.9e-79 298.1 176 100.0
MD13G1118300 Malus domestica HOM05D007500 ORTHO05D009197 2.4e-39 166.8 134 70.1
Haze_12411 Corylus avellana HOM05D007500 ORTHO05D009197 4.1e-39 166.0 160 60.6
QL93p2010_0098 Quercus lobata HOM05D007500 ORTHO05D009197 7.7e-38 161.8 159 59.7
FAN17G2194 Fragaria x ananassa HOM05D007500 ORTHO05D009197 2.9e-37 159.8 156 61.5
QL03p052860 Quercus lobata HOM05D007500 ORTHO05D009197 3.8e-37 159.5 159 59.1
QL03p053117 Quercus lobata HOM05D007500 ORTHO05D009197 3.8e-37 159.5 159 59.1
CANSAT01G0539 Cannabis sativa HOM05D007500 ORTHO05D009197 8.5e-37 158.3 152 58.6
MD16G1118400 Malus domestica HOM05D007500 ORTHO05D009197 8.5e-37 158.3 135 67.4
FAN07G2442 Fragaria x ananassa HOM05D007500 ORTHO05D009197 1.9e-36 157.1 179 56.4
COL.COLO4_20391 Corchorus olitorius HOM05D007500 ORTHO05D009197 4.2e-36 156.0 161 58.4
FAN22G1415 Fragaria x ananassa HOM05D007500 ORTHO05D009197 4.2e-36 156.0 156 60.3
FvH4_4g23840 Fragaria vesca HOM05D007500 ORTHO05D009197 5.5e-36 155.6 162 58.0
FAN12G0274 Fragaria x ananassa HOM05D007500 ORTHO05D009197 5.5e-36 155.6 162 58.0
Cfa009364 Carpinus fangiana HOM05D007500 ORTHO05D009197 2.1e-35 153.7 160 58.8
Potri.001G055000 Populus trichocarpa HOM05D007500 ORTHO05D009197 2.7e-35 153.3 166 53.0
Cpa.g.sc43.48 Carica papaya HOM05D007500 ORTHO05D009197 7.9e-35 151.8 158 55.1
CiPaw.05G110500 Carya illinoinensis HOM05D007500 ORTHO05D009197 7.9e-35 151.8 161 55.9
Gohir.A03G126600 Gossypium hirsutum HOM05D007500 ORTHO05D009197 1.8e-34 150.6 161 56.5
Duzib268G0307 Durio zibethinus HOM05D007500 ORTHO05D009197 5.1e-34 149.1 137 62.0
Sabra01G0039500 Salix brachista HOM05D007500 ORTHO05D009197 8.8e-34 148.3 148 56.1
Thecc.02G209700 Theobroma cacao HOM05D007500 ORTHO05D009197 8.8e-34 148.3 156 56.4
MELO3C011458.2 Cucumis melo HOM05D007500 ORTHO05D009197 2.0e-33 147.1 163 55.8
Dinv14836 Davidia involucrata HOM05D007500 ORTHO05D009197 2.6e-33 146.7 153 55.6
Gohir.D02G150000 Gossypium hirsutum HOM05D007500 ORTHO05D009197 2.6e-33 146.7 161 55.3
Gorai.005G168300 Gossypium raimondii HOM05D007500 ORTHO05D009197 2.6e-33 146.7 161 55.3
PGR102G0196 Punica granatum HOM05D007500 ORTHO05D009197 5.7e-33 145.6 132 62.9
RcHm_v2.0_Chr4g0430411 Rosa chinensis HOM05D007500 ORTHO05D009197 5.7e-33 145.6 135 63.0
CSS0001813 Camellia sinensis var. sinensis HOM05D007500 ORTHO05D009197 2.2e-32 143.7 152 55.3
CsaV3_6G032240 Cucumis sativus L. HOM05D007500 ORTHO05D009197 3.7e-32 142.9 146 58.2
TWI18G0612 Tripterygium wilfordii HOM05D007500 ORTHO05D009197 4.8e-32 142.5 146 54.1
ClCG08G010070 Citrullus lanatus HOM05D007500 ORTHO05D009197 1.1e-31 141.4 163 54.0
THA.LOC104814194 Tarenaya hassleriana HOM05D007500 ORTHO05D009197 3.1e-31 139.8 155 54.2
Atru.chr11.2314 Acer truncatum HOM05D007500 ORTHO05D009197 1.2e-30 137.9 162 50.0
arahy.Tifrunner.gnm1.ann1.Z93F9T Arachis hypogaea HOM05D007500 ORTHO05D009197 5.9e-30 135.6 158 51.3
Ciclev10033679m.g Citrus clementina HOM05D007500 ORTHO05D009197 5.9e-30 135.6 157 52.9
Solyc05g015330.1 Solanum lycopersicum HOM05D007500 ORTHO05D009197 5.9e-30 135.6 150 51.3
Sed0012176 Sechium edule HOM05D007500 ORTHO05D009197 7.7e-30 135.2 134 56.0
Sopen05g010600 Solanum pennellii HOM05D007500 ORTHO05D009197 1.0e-29 134.8 150 51.3
PGSC0003DMG400029106 Solanum tuberosum HOM05D007500 ORTHO05D009197 2.2e-29 133.7 132 55.3
Manes.12G012100 Manihot esculenta HOM05D007500 ORTHO05D009197 2.9e-29 133.3 160 50.6
Carub.0008s0545 Capsella rubella HOM05D007500 ORTHO05D009197 8.5e-29 131.7 148 53.4
Sc14g0009050 Simmondsia chinensis HOM05D007500 ORTHO05D009197 1.4e-28 131.0 135 54.8
Rhsim12G0026300 Rhododendron simsii HOM05D007500 ORTHO05D009197 4.2e-28 129.4 126 59.5
AT5G43250 Arabidopsis thaliana HOM05D007500 ORTHO05D009197 5.5e-28 129.0 141 52.5
Peaxi162Scf00128g00124 Petunia axillaris HOM05D007500 ORTHO05D009197 5.5e-28 129.0 132 54.5
Cc11_g16840 Coffea canephora HOM05D007500 ORTHO05D009197 9.4e-28 128.3 148 54.1
Nn5g28851 Nelumbo nucifera HOM05D007500 ORTHO05D009197 1.2e-27 127.9 160 52.5
Nitab4.5_0001404g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 1.2e-27 127.9 152 50.0
Sp2g08040 Schrenkiella parvula HOM05D007500 ORTHO05D009197 1.2e-27 127.9 139 55.4
Actinidia30653 Actinidia chinensis HOM05D007500 ORTHO05D009197 2.7e-27 126.7 102 66.7
Migut.K00728 Erythranthe guttata HOM05D007500 ORTHO05D009197 3.6e-27 126.3 117 57.3
Thhalv10003290m.g Eutrema salsugineum HOM05D007500 ORTHO05D009197 4.7e-27 125.9 139 54.7
AL8G17240 Arabidopsis lyrata HOM05D007500 ORTHO05D009197 6.1e-27 125.6 138 52.9
TAR381G0854 Trochodendron aralioides HOM05D007500 ORTHO05D009197 8.0e-27 125.2 150 61.3
Phvul.001G261300 Phaseolus vulgaris HOM05D007500 ORTHO05D009197 2.3e-26 123.6 155 49.7
C07p25790 Brassica napus HOM05D007500 ORTHO05D009197 3.0e-26 123.2 138 54.3
BcaC06g31713 Brassica carinata HOM05D007500 ORTHO05D009197 3.9e-26 122.9 139 53.2
BcaC06g31714 Brassica carinata HOM05D007500 ORTHO05D009197 3.9e-26 122.9 139 53.2
BcaC06g34668 Brassica carinata HOM05D007500 ORTHO05D009197 5.2e-26 122.5 138 54.3
BolC7t43101H Brassica oleracea HOM05D007500 ORTHO05D009197 5.2e-26 122.5 138 54.3
Ca_16464_v3 Cicer arietinum L. HOM05D007500 ORTHO05D009197 5.2e-26 122.5 155 49.7
Nitab4.5_0000861g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 6.7e-26 122.1 130 55.4
Aqoxy6G00433 Aquilegia oxysepala HOM05D007500 ORTHO05D009197 8.8e-26 121.7 155 45.2
DCAR_031200 Daucus carota HOM05D007500 ORTHO05D009197 8.8e-26 121.7 138 52.2
MSTRG.7998 Avicennia marina HOM05D007500 ORTHO05D009197 1.5e-25 120.9 115 57.4
EL10Ac6g13495 Beta vulgaris HOM05D007500 ORTHO05D009197 1.5e-25 120.9 113 55.8
Glyma.11G250000 Glycine max HOM05D007500 ORTHO05D009197 1.5e-25 120.9 164 49.4
Lj6g0001546 Lotus japonicus HOM05D007500 ORTHO05D009197 2.6e-25 120.2 136 50.7
Glyma.18G007100 Glycine max HOM05D007500 ORTHO05D009197 3.3e-25 119.8 156 48.7
Psat5g095440 Pisum sativum HOM05D007500 ORTHO05D009197 4.4e-25 119.4 159 48.4
CARHR180640 Cardamine hirsuta HOM05D007500 ORTHO05D009197 5.7e-25 119.0 133 51.9
AUR62005615 Chenopodium quinoa HOM05D007500 ORTHO05D009197 5.7e-25 119.0 114 56.1
TPR.G28279 Trifolium pratense HOM05D007500 ORTHO05D009197 5.7e-25 119.0 103 63.1
Lsat_1_v5_gn_8_131281 Lactuca sativa HOM05D007500 ORTHO05D009197 7.4e-25 118.6 148 47.3
SGA_v2.0_scaffold9G04716 Striga asiatica HOM05D007500 ORTHO05D009197 9.7e-25 118.2 86 67.4
VMungo1383G3421 Vigna mungo HOM05D007500 ORTHO05D009197 1.7e-24 117.5 155 47.7
Lalb_Chr08g0230661 Lupinus albus HOM05D007500 ORTHO05D009197 3.7e-24 116.3 99 64.6
Aa31LG9G13320 Aethionema arabicum HOM05D007500 ORTHO05D009197 1.1e-23 114.8 139 49.6
A06p47960 Brassica napus HOM05D007500 ORTHO05D009197 1.1e-23 114.8 112 57.1
BraA06t27666Z Brassica rapa HOM05D007500 ORTHO05D009197 1.1e-23 114.8 112 57.1
MBI01_g29007_MAGBIO Magnolia biondii HOM05D007500 ORTHO05D009197 1.1e-23 114.8 146 47.9
Medtr3g085430 Medicago truncatula HOM05D007500 ORTHO05D009197 1.8e-23 114.0 156 48.7
PSO541G0382 Papaver somniferum HOM05D007500 ORTHO05D009197 2.4e-23 113.6 133 51.1
AUR62024115 Chenopodium quinoa HOM05D007500 ORTHO05D009197 9.1e-23 111.7 128 52.3
HanXRQChr09g0258281 Helianthus annuus HOM05D007500 ORTHO05D009197 9.1e-23 111.7 106 55.7
CAN.G43.17 Capsicum annuum HOM05D007500 ORTHO05D009197 1.6e-22 110.9 122 54.9
SalBow2G0500 Salvia bowleyana HOM05D007500 ORTHO05D009197 2.0e-22 110.5 87 66.7
Ah.03g136190 Amaranthus hybridus HOM05D007500 ORTHO05D009197 5.9e-22 109.0 124 48.4
unitig_26.g10395 Utricularia gibba HOM05D007500 ORTHO05D009197 2.2e-21 107.1 121 50.4
ECA233G2547 Erigeron canadensis HOM05D007500 ORTHO05D009197 1.5e-20 104.4 122 48.4
PSO675G4883 Papaver somniferum HOM05D007500 ORTHO05D009197 9.4e-20 101.7 121 51.2
HPP92_002864 Vanilla planifolia HOM05D007500 ORTHO05D009197 8.8e-18 95.1 114 54.4
CDE06G2379 Ceratophyllum demersum HOM05D007500 ORTHO05D009197 1.2e-17 94.7 141 46.1
ATR1120G099 Amborella trichopoda HOM05D007500 ORTHO05D009197 2.0e-17 94.0 108 50.9
Zm00001eb122050 Zea mays HOM05D007500 ORTHO05D009197 2.9e-13 80.1 151 41.7
Os01g0183400 Oryza sativa ssp. japonica HOM05D007500 ORTHO05D009197 8.0e-11 72.0 131 37.4
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 5.2e-10 69.3 50 70.0
SEGI_35529 Sequoiadendron giganteum HOM05D007500 ORTHO05D009197 2.0e-09 67.4 95 38.9


User provided reference genes

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