Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G173500 Prunus persica HOM05D002182 ORTHO05D008382 1.7e-148 529.3 255 100.0
MD04G1023600 Malus domestica HOM05D002182 ORTHO05D008382 3.6e-98 362.1 394 53.6
Prupe.1G173400 Prunus persica HOM05D002182 ORTHO05D008382 8.8e-97 357.5 204 86.8
RcHm_v2.0_Chr4g0412031 Rosa chinensis HOM05D002182 ORTHO05D008382 1.1e-94 350.5 394 52.3
FvH4_4g12750 Fragaria vesca HOM05D002182 ORTHO05D008382 1.8e-94 349.7 394 52.0
FAN22G0833 Fragaria x ananassa HOM05D002182 ORTHO05D008382 5.3e-94 348.2 394 51.8
FAN12G0184 Fragaria x ananassa HOM05D002182 ORTHO05D008382 2.7e-90 335.9 204 79.9
FAN17G1163 Fragaria x ananassa HOM05D002182 ORTHO05D008382 2.3e-89 332.8 204 79.4
TAR365G1258 Trochodendron aralioides HOM05D002182 ORTHO05D008382 3.4e-88 328.9 395 47.3
Gorai.011G150100 Gossypium raimondii HOM05D002182 ORTHO05D008382 1.1e-86 323.9 395 47.6
Haze_11692 Corylus avellana HOM05D002182 ORTHO05D008382 1.4e-86 323.6 395 48.6
Duzib212G0342 Durio zibethinus HOM05D002182 ORTHO05D008382 1.8e-86 323.2 395 47.6
CiPaw.01G112100 Carya illinoinensis HOM05D002182 ORTHO05D008382 3.1e-86 322.4 395 48.4
COL.COLO4_35972 Corchorus olitorius HOM05D002182 ORTHO05D008382 7.0e-86 321.2 395 46.8
CSS0003059 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D008382 2.7e-85 319.3 395 47.6
Glyma.11G253100 Glycine max HOM05D002182 ORTHO05D008382 2.7e-85 319.3 391 46.3
Gohir.A10G131800 Gossypium hirsutum HOM05D002182 ORTHO05D008382 7.7e-85 317.8 395 47.1
Psat5g097840 Pisum sativum HOM05D002182 ORTHO05D008382 6.5e-84 314.7 391 46.0
Thecc.04G190100 Theobroma cacao HOM05D002182 ORTHO05D008382 8.5e-84 314.3 395 45.8
GSVIVG01031636001 Vitis vinifera HOM05D002182 ORTHO05D008382 1.1e-83 313.9 204 73.5
Actinidia35818 Actinidia chinensis HOM05D002182 ORTHO05D008382 5.5e-83 311.6 204 73.5
VMungo1383G0373 Vigna mungo HOM05D002182 ORTHO05D008382 5.5e-83 311.6 391 45.8
arahy.Tifrunner.gnm1.ann1.RWIY1E Arachis hypogaea HOM05D002182 ORTHO05D008382 1.6e-82 310.1 391 45.5
Gohir.D10G135200 Gossypium hirsutum HOM05D002182 ORTHO05D008382 1.6e-82 310.1 204 73.0
arahy.Tifrunner.gnm1.ann1.93YPU9 Arachis hypogaea HOM05D002182 ORTHO05D008382 2.7e-82 309.3 391 45.5
Lalb_Chr23g0278251 Lupinus albus HOM05D002182 ORTHO05D008382 3.6e-82 308.9 391 45.5
Phvul.001G264300 Phaseolus vulgaris HOM05D002182 ORTHO05D008382 4.7e-82 308.5 389 46.3
Ca_16436_v3 Cicer arietinum L. HOM05D002182 ORTHO05D008382 1.4e-81 307.0 391 45.0
Dinv32179 Davidia involucrata HOM05D002182 ORTHO05D008382 1.8e-81 306.6 204 73.0
PSO063G4176 Papaver somniferum HOM05D002182 ORTHO05D008382 1.8e-81 306.6 395 45.3
Lj6g0009713 Lotus japonicus HOM05D002182 ORTHO05D008382 2.3e-81 306.2 204 71.6
THA.LOC104800954 Tarenaya hassleriana HOM05D002182 ORTHO05D008382 3.0e-81 305.8 395 43.8
TPR.G18108 Trifolium pratense HOM05D002182 ORTHO05D008382 5.2e-81 305.1 204 72.1
Potri.014G148800 Populus trichocarpa HOM05D002182 ORTHO05D008382 6.8e-81 304.7 395 45.3
Sed0005840 Sechium edule HOM05D002182 ORTHO05D008382 8.8e-81 304.3 395 45.1
ClCG05G007130 Citrullus lanatus HOM05D002182 ORTHO05D008382 1.2e-80 303.9 395 45.1
Eucgr.L00646 Eucalyptus grandis HOM05D002182 ORTHO05D008382 1.5e-80 303.5 395 44.3
Rhsim09G0063400 Rhododendron simsii HOM05D002182 ORTHO05D008382 1.5e-80 303.5 204 71.6
PGR142G0868 Punica granatum HOM05D002182 ORTHO05D008382 3.4e-80 302.4 397 44.1
MELO3C006788.2 Cucumis melo HOM05D002182 ORTHO05D008382 4.4e-80 302.0 395 44.6
Sc19g0007480 Simmondsia chinensis HOM05D002182 ORTHO05D008382 7.5e-80 301.2 395 44.8
Medtr3g084800 Medicago truncatula HOM05D002182 ORTHO05D008382 9.8e-80 300.8 204 70.1
Aqoxy2G03986 Aquilegia oxysepala HOM05D002182 ORTHO05D008382 1.7e-79 300.1 395 44.3
CANSAT78G1786 Cannabis sativa HOM05D002182 ORTHO05D008382 2.2e-79 299.7 395 45.3
Atru.chr3.1773 Acer truncatum HOM05D002182 ORTHO05D008382 2.8e-79 299.3 204 70.6
CsaV3_3G015890 Cucumis sativus L. HOM05D002182 ORTHO05D008382 2.8e-79 299.3 395 44.6
AUR62020905 Chenopodium quinoa HOM05D002182 ORTHO05D008382 4.8e-79 298.5 204 69.6
Nn1g08084 Nelumbo nucifera HOM05D002182 ORTHO05D008382 1.8e-78 296.6 395 44.1
A03p18020 Brassica napus HOM05D002182 ORTHO05D008382 9.1e-78 294.3 392 42.9
Manes.01G002901 Manihot esculenta HOM05D002182 ORTHO05D008382 1.2e-77 293.9 395 43.0
BcaB01g03999 Brassica carinata HOM05D002182 ORTHO05D008382 1.6e-77 293.5 395 42.5
BcaC01g05921 Brassica carinata HOM05D002182 ORTHO05D008382 1.6e-77 293.5 395 42.5
Lsat_1_v5_gn_2_49140 Lactuca sativa HOM05D002182 ORTHO05D008382 1.6e-77 293.5 204 66.7
CARHR125770 Cardamine hirsuta HOM05D002182 ORTHO05D008382 2.0e-77 293.1 395 43.3
Cpa.g.sc157.4 Carica papaya HOM05D002182 ORTHO05D008382 7.7e-77 291.2 204 67.6
BraA03t11062Z Brassica rapa HOM05D002182 ORTHO05D008382 1.0e-76 290.8 401 41.9
Hund19029 Selenicereus undatus HOM05D002182 ORTHO05D008382 1.0e-76 290.8 410 44.4
AL4G27360 Arabidopsis lyrata HOM05D002182 ORTHO05D008382 1.3e-76 290.4 401 42.4
ECA238G0923 Erigeron canadensis HOM05D002182 ORTHO05D008382 2.3e-76 289.7 204 67.6
Thhalv10016222m.g Eutrema salsugineum HOM05D002182 ORTHO05D008382 2.3e-76 289.7 409 41.1
Aa31LG5G5010 Aethionema arabicum HOM05D002182 ORTHO05D008382 2.9e-76 289.3 204 66.7
Cc03_g09640 Coffea canephora HOM05D002182 ORTHO05D008382 2.9e-76 289.3 394 42.4
AT2G32000 Arabidopsis thaliana HOM05D002182 ORTHO05D008382 3.8e-76 288.9 395 42.5
HanXRQChr14g0436751 Helianthus annuus HOM05D002182 ORTHO05D008382 6.6e-76 288.1 204 66.2
TWI63G1391 Tripterygium wilfordii HOM05D002182 ORTHO05D008382 8.6e-76 287.7 395 41.5
EL10Ac3g07419 Beta vulgaris HOM05D002182 ORTHO05D008382 1.1e-75 287.3 204 65.2
Nitab4.5_0004869g0010 Nicotiana tabacum HOM05D002182 ORTHO05D008382 1.5e-75 287.0 384 43.5
Nitab4.5_0000309g0290 Nicotiana tabacum HOM05D002182 ORTHO05D008382 2.5e-75 286.2 384 43.2
C03p21060 Brassica napus HOM05D002182 ORTHO05D008382 5.5e-75 285.0 204 65.2
Carub.0004s1334 Capsella rubella HOM05D002182 ORTHO05D008382 7.2e-75 284.6 204 66.2
Oeu034295.1 Olea europaea HOM05D002182 ORTHO05D008382 7.2e-75 284.6 204 66.7
DCAR_024119 Daucus carota HOM05D002182 ORTHO05D008382 2.1e-74 283.1 204 66.7
Sp4g14400 Schrenkiella parvula HOM05D002182 ORTHO05D008382 1.4e-73 280.4 204 64.7
AUR62018514 Chenopodium quinoa HOM05D002182 ORTHO05D008382 2.3e-73 279.6 246 56.9
Peaxi162Scf00286g00722 Petunia axillaris HOM05D002182 ORTHO05D008382 6.8e-73 278.1 204 65.7
ATR0686G228 Amborella trichopoda HOM05D002182 ORTHO05D008382 1.5e-72 276.9 388 41.2
MBI07_g19432_MAGBIO Magnolia biondii HOM05D002182 ORTHO05D008382 3.4e-72 275.8 196 68.9
Migut.N00431 Erythranthe guttata HOM05D002182 ORTHO05D008382 4.4e-72 275.4 204 62.7
MSTRG.420 Avicennia marina HOM05D002182 ORTHO05D008382 1.3e-71 273.9 204 64.2
CAN.G1325.5 Capsicum annuum HOM05D002182 ORTHO05D008382 1.7e-71 273.5 204 63.7
SalBow3G0147 Salvia bowleyana HOM05D002182 ORTHO05D008382 2.2e-71 273.1 204 62.3
Os09g0500600 Oryza sativa ssp. japonica HOM05D002182 ORTHO05D008382 4.9e-71 271.9 395 41.5
Sabra14G0112200 Salix brachista HOM05D002182 ORTHO05D008382 4.9e-71 271.9 249 56.2
Sopen09g035820 Solanum pennellii HOM05D002182 ORTHO05D008382 6.3e-71 271.6 204 63.2
HPP92_011791 Vanilla planifolia HOM05D002182 ORTHO05D008382 6.3e-71 271.6 204 63.7
Solyc09g097880.4 Solanum lycopersicum HOM05D002182 ORTHO05D008382 1.8e-70 270.0 204 62.7
CDE05G0942 Ceratophyllum demersum HOM05D002182 ORTHO05D008382 9.2e-70 267.7 204 62.3
Zm00001eb317420 Zea mays HOM05D002182 ORTHO05D008382 2.3e-68 263.1 204 61.8
SEGI_13382 Sequoiadendron giganteum HOM05D002182 ORTHO05D008382 2.0e-64 250.0 397 37.0
SGA_v2.0_scaffold128G34129 Striga asiatica HOM05D002182 ORTHO05D008382 1.0e-60 237.7 232 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2256 Anthoceros agrestis HOM05D002182 ORTHO05D008382 2.8e-58 229.6 398 34.7
Mapoly0014s0219 Marchantia polymorpha HOM05D002182 ORTHO05D008382 2.8e-58 229.6 204 53.4
Pp3c8_22620 Physcomitrium patens HOM05D002182 ORTHO05D008382 6.8e-57 224.9 205 52.2
SMO347G0440 Selaginella moellendorffii HOM05D002182 ORTHO05D008382 8.3e-55 218.0 396 33.6
Cre17.g725100 Chlamydomonas reinhardtii HOM05D002182 ORTHO05D008382 1.5e-48 197.2 203 48.8
RcHm_v2.0_Chr2g0108981 Rosa chinensis HOM05D002182 ORTHO05D008382 4.6e-45 185.7 105 81.0
MCO11G923 Micromonas commoda HOM05D002182 ORTHO05D008382 1.5e-43 180.6 206 46.1
Ciclev10007073m.g Citrus clementina HOM05D002182 ORTHO05D008382 1.1e-41 174.5 94 79.8
Lju912C3T0 Lonicera japonica HOM05D002182 ORTHO05D008382 1.4e-38 164.1 93 74.2
SalBow3G3405 Salvia bowleyana HOM05D002182 ORTHO05D008382 1.2e-37 161.0 176 48.3
PGSC0003DMG402016626 Solanum tuberosum HOM05D002182 ORTHO05D008382 2.7e-37 159.8 95 70.5
vmacro00427 Vaccinium macrocarpon HOM05D002182 ORTHO05D008382 4.8e-34 149.1 92 77.2
Haze_26984 Corylus avellana HOM05D002182 ORTHO05D008382 7.6e-32 141.7 208 38.5
Lj6C377T0 Lonicera japonica HOM05D002182 ORTHO05D008382 3.1e-25 119.8 75 70.7
Actinidia20842 Actinidia chinensis HOM05D002182 ORTHO05D008382 9.9e-24 114.8 70 77.1
Aqoxy5G02289 Aquilegia oxysepala HOM05D002182 ORTHO05D004671 2.2e-23 113.6 202 34.2
FvH4_1g24710 Fragaria vesca HOM05D002182 ORTHO05D004671 4.6e-21 105.9 202 33.7
Medtr3g096640 Medicago truncatula HOM05D002182 ORTHO05D004671 6.0e-21 105.5 202 32.7
CBR_g21883 Chara braunii HOM05D002182 ORTHO05D008382 1.3e-20 104.4 85 54.1
AagrBONN_evm.TU.Sc2ySwM_228.5819 Anthoceros agrestis HOM05D002182 ORTHO05D004671 1.8e-20 104.0 246 30.1
Glyma.06G155600 Glycine max HOM05D002182 ORTHO05D004671 2.3e-20 103.6 202 31.2
RcHm_v2.0_Chr2g0122231 Rosa chinensis HOM05D002182 ORTHO05D004671 8.7e-20 101.7 202 32.7
Haze_26976 Corylus avellana HOM05D002182 ORTHO05D004671 1.1e-19 101.3 201 28.9
QL10p041326 Quercus lobata HOM05D002182 ORTHO05D004671 1.1e-19 101.3 202 30.7
Lalb_Chr11g0068591 Lupinus albus HOM05D002182 ORTHO05D004671 1.9e-19 100.5 202 31.7
CiPaw.04G079900 Carya illinoinensis HOM05D002182 ORTHO05D004671 2.5e-19 100.1 202 30.7
Gohir.D11G061900 Gossypium hirsutum HOM05D002182 ORTHO05D004671 3.3e-19 99.8 202 31.2
Gorai.007G066700 Gossypium raimondii HOM05D002182 ORTHO05D004671 3.3e-19 99.8 202 31.2
Manes.13G078050 Manihot esculenta HOM05D002182 ORTHO05D004671 3.3e-19 99.8 202 31.7
Mapoly0113s0011 Marchantia polymorpha HOM05D002182 ORTHO05D004671 4.3e-19 99.4 202 31.2
AUR62000512 Chenopodium quinoa HOM05D002182 ORTHO05D004671 5.6e-19 99.0 202 31.2
MELO3C009682.2 Cucumis melo HOM05D002182 ORTHO05D004671 1.6e-18 97.4 202 31.7
CsaV3_3G039390 Cucumis sativus L. HOM05D002182 ORTHO05D004671 1.6e-18 97.4 202 31.2
Lsat_1_v5_gn_1_78841 Lactuca sativa HOM05D002182 ORTHO05D004671 3.7e-18 96.3 202 30.2
ECA248G2894 Erigeron canadensis HOM05D002182 ORTHO05D004671 8.1e-18 95.1 202 29.7
FAN19G2097 Fragaria x ananassa HOM05D002182 ORTHO05D004671 3.1e-17 93.2 230 30.4
Carub.0008s2470 Capsella rubella HOM05D002182 ORTHO05D004671 4.0e-17 92.8 203 31.0
Duzib106G1908 Durio zibethinus HOM05D002182 ORTHO05D022513 4.0e-17 92.8 111 43.2
FAN26G0537 Fragaria x ananassa HOM05D002182 ORTHO05D004671 6.9e-17 92.0 230 30.4
Os03g0165000 Oryza sativa ssp. japonica HOM05D002182 ORTHO05D004671 9.0e-17 91.7 202 29.2
Cfa022087 Carpinus fangiana HOM05D002182 ORTHO05D004671 1.2e-16 91.3 205 27.3
PRCOL_00003192 Prasinoderma coloniale HOM05D002182 ORTHO05D004671 5.8e-16 89.0 209 27.8
Ah.04g149650 Amaranthus hybridus HOM05D002182 ORTHO05D008382 8.4e-15 85.1 45 77.8
Gohir.A11G057700 Gossypium hirsutum HOM05D002182 ORTHO05D004671 1.6e-13 80.9 166 32.5
MCO11G433 Micromonas commoda HOM05D002182 ORTHO05D004671 1.6e-13 80.9 208 28.8
FAN23G2071 Fragaria x ananassa HOM05D002182 ORTHO05D004671 1.3e-12 77.8 196 31.1
unitig_62.g23374 Utricularia gibba HOM05D002182 ORTHO05D004671 3.9e-12 76.3 166 30.1
ClCG10G017010 Citrullus lanatus HOM05D002182 ORTHO05D004671 2.5e-11 73.6 190 29.5
Ciclev10005848m.g Citrus clementina HOM05D002182 ORTHO05D008382 3.7e-10 69.7 75 48.0
HPP92_005922 Vanilla planifolia HOM05D002182 ORTHO05D004671 4.8e-10 69.3 153 30.1
SHI11490 Sapria himalayana HOM05D002182 ORTHO05D004671 6.3e-10 68.9 142 31.0
QL06p028465 Quercus lobata HOM05D002182 ORTHO05D008382 2.4e-09 67.0 77 48.1
SMO167G0077 Selaginella moellendorffii HOM05D002182 ORTHO05D008382 2.0e-08 63.9 88 36.4
BolC3t14488H Brassica oleracea HOM05D002182 ORTHO05D008382 5.8e-08 62.4 55 50.9
CBR_g75 Chara braunii HOM05D000019 ORTHO05D000048 3.8e-07 59.7 160 28.1
HPP92_005923 Vanilla planifolia HOM05D002182 ORTHO05D004671 5.0e-07 59.3 127 27.6
vmacro00426 Vaccinium macrocarpon HOM05D002182 ORTHO05D008382 3.2e-06 56.6 29 75.9
vmacro12743 Vaccinium macrocarpon HOM05D002182 ORTHO05D004671 9.3e-06 55.1 127 26.8


User provided reference genes

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