Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 2.4e-206 722.2 447 100.0
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 4.1e-166 588.6 462 73.4
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 2.7e-165 585.9 457 79.9
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 7.8e-157 557.8 448 83.7
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 6.2e-154 548.1 442 83.5
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 6.2e-154 548.1 451 82.0
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.3e-148 530.4 442 81.7
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 9.2e-134 481.1 452 71.0
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 1.3e-132 477.2 453 68.2
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 1.8e-129 466.8 450 71.3
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 5.3e-129 465.3 449 67.5
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 7.6e-128 461.5 450 71.3
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 2.2e-127 459.9 453 67.5
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 6.0e-125 451.8 477 58.9
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 1.3e-124 450.7 450 68.7
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 1.3e-124 450.7 456 63.4
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 1.3e-124 450.7 457 67.4
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 3.9e-124 449.1 452 65.7
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 5.1e-124 448.7 459 67.5
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 4.3e-123 445.7 463 59.0
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 7.3e-123 444.9 453 65.6
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 2.8e-122 443.0 454 65.9
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 1.1e-121 441.0 455 65.1
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.4e-121 440.7 450 66.0
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 4.0e-121 439.1 453 60.3
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 6.9e-121 438.3 459 58.4
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 9.9e-120 434.5 457 65.4
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 9.9e-120 434.5 458 60.7
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 4.9e-119 432.2 452 63.3
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 8.4e-119 431.4 445 63.1
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 9.3e-118 427.9 450 65.3
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 2.7e-117 426.4 467 59.7
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 6.0e-117 425.2 470 61.7
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 3.0e-116 422.9 448 62.9
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 5.1e-116 422.2 462 57.8
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 5.1e-116 422.2 462 57.8
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 1.9e-115 420.2 453 60.9
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 1.6e-114 417.2 448 65.6
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 3.7e-114 416.0 453 65.8
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 4.8e-114 415.6 448 65.4
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 4.8e-114 415.6 457 67.0
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 1.1e-113 414.5 463 63.3
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 7.6e-112 408.3 457 61.1
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 2.9e-111 406.4 448 62.9
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 1.2e-109 401.0 434 64.7
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 1.6e-109 400.6 448 56.7
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 1.0e-108 397.9 433 55.7
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.0e-108 397.9 434 67.5
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 1.0e-108 397.9 453 60.7
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 1.9e-107 393.7 453 60.0
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 9.6e-107 391.3 452 57.3
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 9.0e-105 384.8 448 56.7
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 2.6e-104 383.3 448 60.0
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 7.6e-104 381.7 453 55.2
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 1.7e-103 380.6 425 64.9
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.5e-99 367.5 448 58.0
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.5e-99 367.5 448 58.0
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 7.4e-99 365.2 453 57.4
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 2.2e-98 363.6 453 56.1
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 4.8e-98 362.5 417 57.8
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 1.1e-94 351.3 450 58.7
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 4.8e-90 335.9 465 53.5
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 5.3e-89 332.4 455 54.9
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 2.2e-87 327.0 429 52.9
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 6.5e-87 325.5 454 57.5
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 1.6e-85 320.9 448 52.2
Glyma.08G110600 Glycine max HOM05D004237 ORTHO05D005002 7.4e-83 312.0 385 59.7
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 3.5e-80 303.1 234 68.4
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 2.5e-78 297.0 448 54.2
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 3.6e-77 293.1 447 42.7
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 2.0e-75 287.3 425 52.9
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 1.3e-74 284.6 460 52.4
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 4.8e-74 282.7 464 50.4
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 1.5e-70 271.2 446 44.6
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 1.8e-60 237.7 467 50.1
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 7.0e-57 225.7 446 46.0
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 1.9e-54 217.6 461 51.4
Nitab4.5_0000697g0020 Nicotiana tabacum HOM05D004237 ORTHO05D005002 2.1e-53 214.2 366 49.7
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 1.3e-47 194.9 156 63.5
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 1.3e-47 194.9 156 63.5
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 1.4e-44 184.9 292 42.8
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 2.7e-40 170.6 272 41.9
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 1.3e-39 168.3 266 42.5
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 1.9e-38 164.5 156 53.2
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 1.2e-37 161.8 267 41.9
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 4.7e-37 159.8 266 40.2
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 6.2e-37 159.5 127 57.5
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 6.2e-37 159.5 211 46.0
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 8.1e-37 159.1 202 46.5
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 8.1e-37 159.1 202 46.0
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 8.1e-37 159.1 127 59.1
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 1.8e-36 157.9 186 46.2
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 1.8e-36 157.9 186 46.2
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 1.8e-36 157.9 453 37.7
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 2.3e-36 157.5 127 56.7
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 3.1e-36 157.1 205 46.8
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 4.0e-36 156.8 143 52.4
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 5.2e-36 156.4 264 38.6
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 5.2e-36 156.4 265 37.7
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 5.2e-36 156.4 133 54.1
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 6.8e-36 156.0 151 51.7
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 6.8e-36 156.0 127 58.3
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 1.2e-35 155.2 127 57.5
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.2e-35 155.2 144 53.5
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 1.2e-35 155.2 159 48.4
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 1.2e-35 155.2 127 56.7
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 1.5e-35 154.8 153 51.0
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 2.0e-35 154.5 153 51.0
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 2.0e-35 154.5 149 52.3
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 2.0e-35 154.5 270 39.3
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 2.0e-35 154.5 207 43.5
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 2.6e-35 154.1 127 57.5
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 3.4e-35 153.7 182 46.7
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 5.8e-35 152.9 127 59.8
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 5.8e-35 152.9 265 39.2
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 5.8e-35 152.9 274 38.0
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 5.8e-35 152.9 264 38.6
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 7.5e-35 152.5 156 48.7
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 7.5e-35 152.5 269 38.3
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 7.5e-35 152.5 127 56.7
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 9.8e-35 152.1 151 51.7
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 9.8e-35 152.1 151 51.7
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 9.8e-35 152.1 153 49.7
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 9.8e-35 152.1 265 38.5
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 9.8e-35 152.1 132 53.8
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 9.8e-35 152.1 134 53.7
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 1.3e-34 151.8 268 40.3
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 1.7e-34 151.4 136 51.5
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 2.2e-34 151.0 268 37.7
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 2.9e-34 150.6 137 51.1
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 3.7e-34 150.2 272 38.2
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 3.7e-34 150.2 272 38.2
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 3.7e-34 150.2 132 53.0
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 8.3e-34 149.1 127 53.5
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.1e-33 148.7 180 47.8
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 1.1e-33 148.7 314 34.7
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 1.4e-33 148.3 267 39.3
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 3.2e-33 147.1 213 43.2
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 3.2e-33 147.1 252 38.5
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 4.1e-33 146.7 129 52.7
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 4.1e-33 146.7 129 52.7
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 7.1e-33 146.0 275 38.2
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 1.2e-32 145.2 308 36.4
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 1.6e-32 144.8 276 37.3
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 2.1e-32 144.4 278 36.7
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 3.5e-32 143.7 270 36.7
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 3.5e-32 143.7 129 55.0
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 6.0e-32 142.9 300 37.0
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 1.7e-31 141.4 292 37.0
TPR.G11942 Trifolium pratense HOM05D004237 ORTHO05D005002 1.7e-31 141.4 78 87.2
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 5.1e-31 139.8 129 50.4
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 4.3e-30 136.7 282 35.5
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 1.6e-29 134.8 160 45.6
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 3.6e-29 133.7 259 38.2
unitig_45.g31538 Utricularia gibba HOM05D004237 ORTHO05D005002 3.4e-27 127.1 230 34.8
unitig_578.g16512 Utricularia gibba HOM05D004237 ORTHO05D005002 3.4e-27 127.1 230 34.8
SHI01026 Sapria himalayana HOM05D004237 ORTHO05D005002 6.6e-23 112.8 377 43.8
Lj6P390T29 Lonicera japonica HOM05D004237 ORTHO05D005002 5.6e-22 109.8 128 50.8
FvH4_4g13413 Fragaria vesca HOM05D004237 ORTHO05D196496 4.6e-16 90.1 122 67.2
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 4.6e-08 63.5 60 53.3
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 2.5e-06 57.8 57 50.9
AUR62023195 Chenopodium quinoa HOM05D004237 ORTHO05D005002 4.3e-06 57.0 93 39.8


User provided reference genes

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