Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G095300 Prunus persica HOM05D005241 ORTHO05D005862 7.5e-152 540.4 261 100.0
RcHm_v2.0_Chr4g0404611 Rosa chinensis HOM05D005241 ORTHO05D005862 1.3e-119 433.3 258 80.2
FAN07G2217 Fragaria x ananassa HOM05D005241 ORTHO05D005862 2.5e-115 419.1 258 77.9
MD13G1261500 Malus domestica HOM05D005241 ORTHO05D005862 9.0e-113 410.6 259 79.5
QL02p096102 Quercus lobata HOM05D005241 ORTHO05D005862 4.9e-103 378.3 258 72.5
FAN12G0682 Fragaria x ananassa HOM05D005241 ORTHO05D005862 4.0e-97 358.6 192 85.9
Haze_22151 Corylus avellana HOM05D005241 ORTHO05D005862 1.2e-96 357.1 240 73.3
FvH4_4g09810 Fragaria vesca HOM05D005241 ORTHO05D005862 1.4e-94 350.1 183 88.0
FAN17G0752 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.4e-94 350.1 183 86.9
Atru.chr7.554 Acer truncatum HOM05D005241 ORTHO05D005862 3.0e-92 342.4 268 64.9
Ciclev10008429m.g Citrus clementina HOM05D005241 ORTHO05D005862 1.6e-90 336.7 205 76.1
CANSAT11G2449 Cannabis sativa HOM05D005241 ORTHO05D005862 4.8e-90 335.1 224 71.0
Sed0027242 Sechium edule HOM05D005241 ORTHO05D005862 8.2e-90 334.3 244 67.2
Dinv42767 Davidia involucrata HOM05D005241 ORTHO05D005862 4.1e-89 332.0 192 78.6
Dinv43336 Davidia involucrata HOM05D005241 ORTHO05D005862 4.1e-89 332.0 192 78.6
CsaV3_1G029530 Cucumis sativus L. HOM05D005241 ORTHO05D005862 5.3e-89 331.6 175 82.3
Lj4g0014860 Lotus japonicus HOM05D005241 ORTHO05D005862 5.3e-89 331.6 175 86.3
CiPaw.07G187700 Carya illinoinensis HOM05D005241 ORTHO05D005862 1.2e-88 330.5 175 84.0
Actinidia24021 Actinidia chinensis HOM05D005241 ORTHO05D005862 5.9e-88 328.2 265 64.2
Manes.06G028800 Manihot esculenta HOM05D005241 ORTHO05D005862 1.0e-87 327.4 175 83.4
COL.COLO4_16080 Corchorus olitorius HOM05D005241 ORTHO05D005862 1.9e-86 323.2 260 63.5
TWI34G1734 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 1.9e-86 323.2 182 79.1
Lalb_Chr07g0180171 Lupinus albus HOM05D005241 ORTHO05D005862 3.2e-86 322.4 169 85.2
Glyma.17G067600 Glycine max HOM05D005241 ORTHO05D005862 4.2e-86 322.0 175 83.4
TWI34G0564 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 4.2e-86 322.0 175 81.7
Phvul.003G150000 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 7.2e-86 321.2 175 83.4
Sabra18G0084300 Salix brachista HOM05D005241 ORTHO05D005862 1.2e-85 320.5 165 86.1
TAR629G1464 Trochodendron aralioides HOM05D005241 ORTHO05D005862 1.2e-85 320.5 257 61.9
COL.COLO4_16078 Corchorus olitorius HOM05D005241 ORTHO05D005862 1.6e-85 320.1 175 81.1
Duzib150G1634 Durio zibethinus HOM05D005241 ORTHO05D005862 1.6e-85 320.1 175 82.3
Thecc.09G163500 Theobroma cacao HOM05D005241 ORTHO05D005862 2.1e-85 319.7 175 81.7
Dinv41292 Davidia involucrata HOM05D005241 ORTHO05D005862 4.6e-85 318.5 173 80.9
Lj9A730T54 Lonicera japonica HOM05D005241 ORTHO05D005862 7.9e-85 317.8 272 59.9
Potri.018G097100 Populus trichocarpa HOM05D005241 ORTHO05D005862 7.9e-85 317.8 165 84.8
Cpa.g.sc450.6 Carica papaya HOM05D005241 ORTHO05D005862 1.0e-84 317.4 175 81.7
Lsat_1_v5_gn_8_65460 Lactuca sativa HOM05D005241 ORTHO05D005862 1.8e-84 316.6 166 85.5
Medtr4g129180 Medicago truncatula HOM05D005241 ORTHO05D005862 3.0e-84 315.8 167 86.2
VMungo1215G3242 Vigna mungo HOM05D005241 ORTHO05D005862 5.1e-84 315.1 175 81.1
Gohir.D06G047501 Gossypium hirsutum HOM05D005241 ORTHO05D005862 6.7e-84 314.7 175 80.0
Gohir.A06G047300 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.1e-83 313.9 175 79.4
Psat4g010840 Pisum sativum HOM05D005241 ORTHO05D005862 1.1e-83 313.9 175 80.6
CDE10G0441 Ceratophyllum demersum HOM05D005241 ORTHO05D005862 1.9e-83 313.2 252 64.3
ClCG06G012960 Citrullus lanatus HOM05D005241 ORTHO05D005862 3.3e-83 312.4 261 61.7
Gorai.010G053100 Gossypium raimondii HOM05D005241 ORTHO05D005862 5.7e-83 311.6 176 80.1
HanXRQChr06g0178861 Helianthus annuus HOM05D005241 ORTHO05D005862 7.4e-83 311.2 174 81.6
Lalb_Chr07g0180161 Lupinus albus HOM05D005241 ORTHO05D005862 9.7e-83 310.8 184 75.0
Sopen12g007320 Solanum pennellii HOM05D005241 ORTHO05D005862 9.7e-83 310.8 166 81.9
CSS0029475 Camellia sinensis var. sinensis HOM05D005241 ORTHO05D005862 1.3e-82 310.5 165 83.0
Lj4g0023001 Lotus japonicus HOM05D005241 ORTHO05D005862 1.3e-82 310.5 169 81.1
Oeu043521.1 Olea europaea HOM05D005241 ORTHO05D005862 1.3e-82 310.5 175 78.9
Psat4g010800 Pisum sativum HOM05D005241 ORTHO05D005862 1.6e-82 310.1 169 79.9
arahy.Tifrunner.gnm1.ann1.RWXM46 Arachis hypogaea HOM05D005241 ORTHO05D005862 2.2e-82 309.7 224 66.1
Ca_21190_v3 Cicer arietinum L. HOM05D005241 ORTHO05D005862 2.8e-82 309.3 175 80.0
Solyc12g014440.2 Solanum lycopersicum HOM05D005241 ORTHO05D005862 4.8e-82 308.5 249 63.5
Gohir.A05G345818 Gossypium hirsutum HOM05D005241 ORTHO05D005862 6.3e-82 308.1 263 60.8
Thecc.09G163700 Theobroma cacao HOM05D005241 ORTHO05D005862 6.3e-82 308.1 185 74.1
MSTRG.19688 Avicennia marina HOM05D005241 ORTHO05D005862 8.2e-82 307.8 166 81.9
Glyma.13G092800 Glycine max HOM05D005241 ORTHO05D005862 8.2e-82 307.8 174 78.7
Phvul.003G150200 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 1.1e-81 307.4 184 76.1
arahy.Tifrunner.gnm1.ann1.4YP8RP Arachis hypogaea HOM05D005241 ORTHO05D005862 1.4e-81 307.0 172 79.1
vmacro13085 Vaccinium macrocarpon HOM05D005241 ORTHO05D005862 1.8e-81 306.6 261 58.6
Rhsim01G0009500 Rhododendron simsii HOM05D005241 ORTHO05D005862 2.4e-81 306.2 244 62.3
Carub.0008s1821 Capsella rubella HOM05D005241 ORTHO05D005862 3.1e-81 305.8 165 82.4
Sp6g19390 Schrenkiella parvula HOM05D005241 ORTHO05D005862 3.1e-81 305.8 165 83.6
THA.LOC104813533 Tarenaya hassleriana HOM05D005241 ORTHO05D005862 3.1e-81 305.8 172 79.7
ECA236G3445 Erigeron canadensis HOM05D005241 ORTHO05D005862 4.1e-81 305.4 165 84.2
FAN22G1361 Fragaria x ananassa HOM05D005241 ORTHO05D005862 5.3e-81 305.1 358 48.0
CARHR271450 Cardamine hirsuta HOM05D005241 ORTHO05D005862 6.9e-81 304.7 164 81.1
AL8G33730 Arabidopsis lyrata HOM05D005241 ORTHO05D005862 9.0e-81 304.3 165 82.4
MBI18_g28946_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 9.0e-81 304.3 166 81.9
Medtr4g129200 Medicago truncatula HOM05D005241 ORTHO05D005862 9.0e-81 304.3 170 80.6
PGR102G1178 Punica granatum HOM05D005241 ORTHO05D005862 9.0e-81 304.3 173 75.1
SalBow6G2881 Salvia bowleyana HOM05D005241 ORTHO05D005862 9.0e-81 304.3 175 78.3
SalBow6G2671 Salvia bowleyana HOM05D005241 ORTHO05D005862 2.0e-80 303.1 175 77.7
AT5G57700 Arabidopsis thaliana HOM05D005241 ORTHO05D005862 3.4e-80 302.4 165 81.8
PSO384G1775 Papaver somniferum HOM05D005241 ORTHO05D005862 7.7e-80 301.2 165 80.0
DCAR_014714 Daucus carota HOM05D005241 ORTHO05D005862 1.0e-79 300.8 184 73.4
Thhalv10013983m.g Eutrema salsugineum HOM05D005241 ORTHO05D005862 1.0e-79 300.8 165 83.0
Nn7g37052 Nelumbo nucifera HOM05D005241 ORTHO05D005862 1.0e-79 300.8 269 58.0
Aqoxy4G03021 Aquilegia oxysepala HOM05D005241 ORTHO05D005862 1.7e-79 300.1 163 82.8
BolC3t13925H Brassica oleracea HOM05D005241 ORTHO05D005862 1.7e-79 300.1 165 81.8
SGA_v2.0_scaffold66G22503 Striga asiatica HOM05D005241 ORTHO05D005862 1.7e-79 300.1 246 60.2
TPR.G5349 Trifolium pratense HOM05D005241 ORTHO05D005862 2.2e-79 299.7 169 77.5
BraA03t10577Z Brassica rapa HOM05D005241 ORTHO05D005862 2.9e-79 299.3 165 81.8
Cc06_g13790 Coffea canephora HOM05D005241 ORTHO05D005862 3.8e-79 298.9 175 77.1
Eucgr.C02440 Eucalyptus grandis HOM05D005241 ORTHO05D005862 3.8e-79 298.9 181 71.8
A03p12620 Brassica napus HOM05D005241 ORTHO05D005862 6.5e-79 298.1 165 81.2
PSO135G0092 Papaver somniferum HOM05D005241 ORTHO05D005862 1.9e-78 296.6 165 78.2
Aa31LG3G13540 Aethionema arabicum HOM05D005241 ORTHO05D005862 4.2e-78 295.4 163 81.0
PSO135G0726 Papaver somniferum HOM05D005241 ORTHO05D005862 4.2e-78 295.4 165 77.6
Glyma.13G092900 Glycine max HOM05D005241 ORTHO05D005862 2.1e-77 293.1 163 82.2
Gohir.D04G085700 Gossypium hirsutum HOM05D005241 ORTHO05D005862 2.1e-77 293.1 184 73.4
PSO384G2580 Papaver somniferum HOM05D005241 ORTHO05D005862 4.6e-77 292.0 165 76.4
Gorai.012G095700 Gossypium raimondii HOM05D005241 ORTHO05D005862 6.1e-77 291.6 184 73.4
ATR0796G313 Amborella trichopoda HOM05D005241 ORTHO05D005862 2.3e-76 289.7 163 79.1
C03p14830 Brassica napus HOM05D005241 ORTHO05D005862 2.3e-76 289.7 165 79.4
unitig_0.g567 Utricularia gibba HOM05D005241 ORTHO05D005862 2.3e-76 289.7 166 76.5
SEGI_10163 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 2.0e-75 286.6 165 76.4
Os07g0516000 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 1.7e-74 283.5 165 77.0
PSO135G0552 Papaver somniferum HOM05D005241 ORTHO05D005862 6.3e-74 281.6 165 75.2
Zm00001eb105960 Zea mays HOM05D005241 ORTHO05D005862 2.0e-72 276.6 165 75.2
AUR62040288 Chenopodium quinoa HOM05D005241 ORTHO05D005862 2.6e-72 276.2 163 73.0
Peaxi162Scf00078g00547 Petunia axillaris HOM05D005241 ORTHO05D005862 5.9e-72 275.0 166 75.3
Hund09015 Selenicereus undatus HOM05D005241 ORTHO05D005862 1.7e-71 273.5 165 72.7
HPP92_013485 Vanilla planifolia HOM05D005241 ORTHO05D005862 2.9e-71 272.7 167 74.3
EL10Ac8g18255 Beta vulgaris HOM05D005241 ORTHO05D005862 8.5e-71 271.2 163 70.6
Hma1.2p1_0921F.1_g236680 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 3.6e-69 265.8 207 64.3
Os07g0516050 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 2.3e-68 263.1 163 69.9
Zm00001eb105910 Zea mays HOM05D005241 ORTHO05D005862 8.8e-68 261.2 163 69.9
SMO351G0057 Selaginella moellendorffii HOM05D005241 ORTHO05D005862 8.2e-66 254.6 167 67.1
Mapoly0080s0044 Marchantia polymorpha HOM05D005241 ORTHO05D005862 1.1e-65 254.2 186 61.3
Pp3c3_37310 Physcomitrium patens HOM05D005241 ORTHO05D005862 3.8e-63 245.7 165 63.6
Hma1.2p1_2604F.1_g325280 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 1.4e-60 237.3 199 59.8
PGSC0003DMG400012851 Solanum tuberosum HOM05D005241 ORTHO05D005862 5.7e-59 231.9 138 76.1
AUR62039979 Chenopodium quinoa HOM05D005241 ORTHO05D005862 3.7e-58 229.2 174 57.5
Nitab4.5_0000168g0090 Nicotiana tabacum HOM05D005241 ORTHO05D005862 4.8e-58 228.8 166 63.9
Nitab4.5_0006743g0030 Nicotiana tabacum HOM05D005241 ORTHO05D005862 1.4e-57 227.3 150 68.7
Sc08g0005390 Simmondsia chinensis HOM05D005241 ORTHO05D005862 2.0e-56 223.4 128 78.1
Peaxi162Scf00339g00098 Petunia axillaris HOM05D005241 ORTHO05D005862 7.7e-56 221.5 153 66.0
TPR.G40451 Trifolium pratense HOM05D005241 ORTHO05D005862 7.7e-56 221.5 112 88.4
HPP92_026039 Vanilla planifolia HOM05D005241 ORTHO05D005862 1.0e-55 221.1 167 64.1
EL10Ac8g18254 Beta vulgaris HOM05D005241 ORTHO05D005862 3.2e-54 216.1 165 56.4
Hund26388 Selenicereus undatus HOM05D005241 ORTHO05D005862 3.4e-51 206.1 166 54.2
MELO3C017513.2 Cucumis melo HOM05D005241 ORTHO05D005862 4.4e-51 205.7 156 64.1
Nitab4.5_0000692g0020 Nicotiana tabacum HOM05D005241 ORTHO05D005862 4.1e-41 172.6 113 71.7
Hund09002 Selenicereus undatus HOM05D000185 ORTHO05D000105 4.0e-36 156.0 129 58.1
FAN12G2859 Fragaria x ananassa HOM05D005241 ORTHO05D005862 9.2e-33 144.8 73 89.0
MELO3C029512.2 Cucumis melo HOM05D005241 ORTHO05D005862 2.7e-32 143.3 70 85.7
Nn8g41235 Nelumbo nucifera HOM05D005241 ORTHO05D005862 1.6e-29 134.0 78 73.1
EL10Ac9g22414 Beta vulgaris HOM05D005241 ORTHO05D005862 8.9e-28 128.3 137 44.5
SEGI_04095 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 2.0e-27 127.1 70 74.3
Glyma.17G067650 Glycine max HOM05D005241 ORTHO05D005862 4.9e-26 122.5 65 80.0
Migut.J01437 Erythranthe guttata HOM05D005241 ORTHO05D005862 1.1e-25 121.3 65 81.5
SHI03002 Sapria himalayana HOM05D005241 ORTHO05D005862 1.1e-12 78.2 181 32.6
Peaxi162Scf00013g00004 Petunia axillaris HOM05D000090 ORTHO05D001322 6.4e-10 68.9 41 68.3
TPR.G5299 Trifolium pratense HOM05D005241 ORTHO05D005862 3.2e-09 66.6 39 69.2
EL10Ac7g17876 Beta vulgaris HOM05D005241 ORTHO05D005862 3.3e-06 56.6 32 65.6


User provided reference genes

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