Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 7.6e-33 143.3 74 100.0
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 3.0e-29 131.3 74 86.5
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 4.3e-28 127.5 74 85.1
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 7.3e-28 126.7 74 82.4
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 9.6e-28 126.3 74 82.4
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 9.6e-28 126.3 74 82.4
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 9.6e-28 126.3 74 85.1
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.3e-27 125.9 74 82.4
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.6e-27 125.6 74 82.4
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 6.9e-26 120.2 75 81.3
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 3.4e-25 117.9 74 81.1
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 3.4e-25 117.9 74 81.1
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 3.4e-25 117.9 74 79.7
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 4.4e-25 117.5 74 74.3
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 4.4e-25 117.5 74 79.7
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 5.8e-25 117.1 75 78.7
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 5.8e-25 117.1 74 78.4
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 7.6e-25 116.7 74 79.7
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 9.9e-25 116.3 75 76.0
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 1.3e-24 115.9 74 78.4
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 1.7e-24 115.5 74 78.4
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 2.2e-24 115.2 74 74.3
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 2.2e-24 115.2 74 77.0
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 3.8e-24 114.4 74 77.0
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 4.9e-24 114.0 74 77.0
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 8.4e-24 113.2 74 78.4
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 8.4e-24 113.2 74 74.3
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 1.1e-23 112.8 74 74.3
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 1.4e-23 112.5 75 73.3
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 3.2e-23 111.3 74 74.3
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 7.1e-23 110.2 74 71.6
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 9.3e-23 109.8 74 70.3
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 1.2e-22 109.4 74 68.9
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 1.6e-22 109.0 74 70.3
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.6e-22 109.0 73 71.2
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.7e-22 108.2 73 69.9
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 2.7e-22 108.2 75 70.7
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 4.6e-22 107.5 74 67.6
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 7.8e-22 106.7 74 73.0
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 7.8e-22 106.7 74 71.6
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 7.8e-22 106.7 74 71.6
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 1.3e-21 105.9 75 76.0
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 1.7e-21 105.5 74 68.9
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 1.7e-21 105.5 73 69.9
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.7e-21 105.5 73 68.5
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 2.3e-21 105.1 74 73.0
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 3.0e-21 104.8 74 75.7
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 3.9e-21 104.4 74 73.0
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 1.9e-20 102.1 75 73.3
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 1.9e-20 102.1 74 67.6
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 2.5e-20 101.7 74 68.9
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 3.3e-20 101.3 64 76.6
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 7.3e-20 100.1 74 70.3
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 7.3e-20 100.1 79 68.4
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 9.6e-20 99.8 78 64.1
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 9.6e-20 99.8 78 64.1
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 1.3e-19 99.4 72 65.3
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.3e-19 99.4 78 64.1
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 1.6e-19 99.0 61 75.4
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 2.1e-19 98.6 72 69.4
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 2.1e-19 98.6 79 69.6
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 2.8e-19 98.2 73 65.8
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.8e-19 98.2 78 62.8
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 2.8e-19 98.2 78 64.1
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 2.8e-19 98.2 78 64.1
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 2.8e-19 98.2 78 65.4
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 4.8e-19 97.4 74 66.2
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 6.2e-19 97.1 78 62.8
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 8.1e-19 96.7 72 63.9
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 8.1e-19 96.7 79 64.6
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 8.1e-19 96.7 75 66.7
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.8e-18 95.5 72 65.3
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 1.8e-18 95.5 75 66.7
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 3.1e-18 94.7 75 66.7
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 3.1e-18 94.7 79 62.0
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 3.1e-18 94.7 79 62.0
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 5.3e-18 94.0 75 64.0
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 6.9e-18 93.6 79 63.3
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 9.0e-18 93.2 77 64.9
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 2.0e-17 92.0 75 62.7
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 2.0e-17 92.0 72 63.9
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 3.4e-17 91.3 77 62.3
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 3.4e-17 91.3 64 75.0
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 3.4e-17 91.3 62 71.0
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 5.8e-17 90.5 78 64.1
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 5.8e-17 90.5 78 64.1
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 9.9e-17 89.7 69 66.7
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.3e-16 89.4 75 61.3
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 1.3e-16 89.4 80 57.5
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 1.3e-16 89.4 54 74.1
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.9e-16 88.2 70 62.9
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 3.8e-16 87.8 71 62.0
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 4.9e-16 87.4 69 65.2
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 4.9e-16 87.4 69 65.2
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 4.9e-16 87.4 69 65.2
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 4.9e-16 87.4 69 65.2
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 4.9e-16 87.4 69 65.2
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 6.4e-16 87.0 80 60.0
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 8.4e-16 86.7 69 63.8
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 1.1e-15 86.3 59 69.5
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 1.1e-15 86.3 78 57.7
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 1.4e-15 85.9 57 71.9
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 1.9e-15 85.5 69 63.8
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 1.9e-15 85.5 73 57.5
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.9e-15 85.5 81 58.0
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 2.4e-15 85.1 80 58.8
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 3.2e-15 84.7 81 60.5
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 3.2e-15 84.7 56 69.6
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 4.2e-15 84.3 69 65.2
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 4.2e-15 84.3 69 65.2
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 5.4e-15 84.0 45 84.4
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 9.3e-15 83.2 64 60.9
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 1.2e-14 82.8 45 82.2
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 1.2e-14 82.8 78 57.7
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 1.6e-14 82.4 50 78.0
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 4.6e-14 80.9 76 57.9
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 6.0e-14 80.5 80 52.5
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 6.0e-14 80.5 56 66.1
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 7.9e-14 80.1 68 55.9
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 7.9e-14 80.1 75 58.7
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 1.3e-13 79.3 74 56.8
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 1.3e-13 79.3 60 65.0
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 1.3e-13 79.3 60 65.0
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.3e-13 79.3 74 55.4
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 1.8e-13 79.0 80 56.2
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.8e-13 79.0 61 63.9
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 2.3e-13 78.6 78 57.7
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 3.0e-13 78.2 73 60.3
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 8.7e-13 76.6 76 53.9
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.1e-12 76.3 47 70.2
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 1.1e-12 76.3 75 52.0
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 1.5e-12 75.9 44 75.0
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 1.5e-12 75.9 73 57.5
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.5e-12 75.9 77 55.8
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 1.9e-12 75.5 53 60.4
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 2.5e-12 75.1 53 62.3
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 2.5e-12 75.1 66 53.0
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 2.5e-12 75.1 58 63.8
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 4.3e-12 74.3 55 65.5
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 1.3e-11 72.8 74 51.4
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 1.3e-11 72.8 74 51.4
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 1.3e-11 72.8 74 51.4
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 1.3e-11 72.8 74 51.4
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 1.3e-11 72.8 59 61.0
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 1.3e-11 72.8 74 51.4
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 1.6e-11 72.4 74 50.0
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 2.1e-11 72.0 51 56.9
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 3.7e-11 71.2 74 51.4
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 1.8e-10 68.9 73 50.7
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 9.0e-10 66.6 57 59.6
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 4.5e-09 64.3 35 80.0
MBI16_g37211_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 3.5e-06 54.7 43 62.8


User provided reference genes

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