Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3s76_50 Physcomitrium patens HOM05D012631 ORTHO05D309851 6.0e-94 347.4 168 100.0
Pp3c25_15500 Physcomitrium patens HOM05D012631 ORTHO05D314422 9.4e-55 217.2 150 73.3
Pp3c19_23110 Physcomitrium patens HOM05D000750 ORTHO05D011352 2.0e-41 172.9 142 64.8
Pp3c23_140 Physcomitrium patens HOM05D012631 ORTHO05D318245 4.4e-28 128.6 127 57.5
Pp3c26_15710 Physcomitrium patens HOM05D012631 ORTHO05D311196 1.1e-26 124.0 98 68.4
Pp3c26_15720 Physcomitrium patens HOM05D012631 ORTHO05D312165 1.1e-26 124.0 98 68.4
Pp3c21_30 Physcomitrium patens HOM05D012631 ORTHO05D308412 7.0e-26 121.3 98 67.3
Pp3c3_38260 Physcomitrium patens HOM05D012631 ORTHO05D311037 7.0e-26 121.3 98 66.3
Pp3c5_29050 Physcomitrium patens HOM05D000750 ORTHO05D011352 7.7e-25 117.9 79 72.2
Pp3c5_14060 Physcomitrium patens HOM05D000377 ORTHO05D000892 2.2e-24 116.3 188 42.0
Pp3c5_14090 Physcomitrium patens HOM05D000377 ORTHO05D000892 2.2e-24 116.3 188 42.0
Pp3c6_13600 Physcomitrium patens HOM05D000377 ORTHO05D000892 5.0e-24 115.2 170 44.1
Pp3c6_13660 Physcomitrium patens HOM05D000377 ORTHO05D000892 5.0e-24 115.2 170 44.1
Pp3c6_29810 Physcomitrium patens HOM05D000377 ORTHO05D000892 1.8e-21 106.7 102 55.9
Pp3c6_30060 Physcomitrium patens HOM05D000377 ORTHO05D000892 5.0e-16 88.6 45 80.0
Pp3c19_1380 Physcomitrium patens HOM05D000377 ORTHO05D000892 5.6e-15 85.1 45 77.8
Pp3c2_38390 Physcomitrium patens HOM05D000377 ORTHO05D000892 2.1e-14 83.2 45 73.3
Pp3c4_32400 Physcomitrium patens HOM05D000377 ORTHO05D000892 2.1e-14 83.2 45 73.3
Pp3c11_120 Physcomitrium patens HOM05D012631 ORTHO05D011352 4.7e-14 82.0 59 69.5
Pp3c16_26120 Physcomitrium patens HOM05D000377 ORTHO05D000892 6.1e-14 81.6 45 75.6
Mapoly0104s0012 Marchantia polymorpha HOM05D000377 ORTHO05D000892 2.4e-10 69.7 162 31.5
AagrBONN_evm.TU.Sc2ySwM_228.152 Anthoceros agrestis HOM05D000377 ORTHO05D000892 4.6e-09 65.5 176 29.5
SEGI_31067 Sequoiadendron giganteum HOM05D000377 ORTHO05D000892 5.0e-08 62.0 176 29.0
THA.LOC104820038 Tarenaya hassleriana HOM05D000377 ORTHO05D000892 3.3e-07 59.3 43 58.1
Pp3c25_15510 Physcomitrium patens HOM05D000750 ORTHO05D011352 4.3e-07 58.9 33 78.8
SHI02803 Sapria himalayana HOM05D000377 ORTHO05D000892 5.6e-07 58.5 141 32.6
ClCG11G001920 Citrullus lanatus HOM05D000377 ORTHO05D000892 7.3e-07 58.2 43 55.8
MELO3C004610.2 Cucumis melo HOM05D000377 ORTHO05D000892 1.2e-06 57.4 43 55.8
Lj4g0019826 Lotus japonicus HOM05D000377 ORTHO05D000892 1.2e-06 57.4 75 38.7
HPP92_005556 Vanilla planifolia HOM05D000377 ORTHO05D000892 1.6e-06 57.0 43 53.5
AL4G17870 Arabidopsis lyrata HOM05D000377 ORTHO05D000892 2.1e-06 56.6 143 33.6
CDE02G4302 Ceratophyllum demersum HOM05D000377 ORTHO05D000892 2.1e-06 56.6 43 53.5
SEGI_29661 Sequoiadendron giganteum HOM05D000377 ORTHO05D000892 2.1e-06 56.6 43 55.8
Cc06_g10850 Coffea canephora HOM05D000377 ORTHO05D000892 2.8e-06 56.2 43 53.5
Duzib150G1481 Durio zibethinus HOM05D000377 ORTHO05D000892 2.8e-06 56.2 43 53.5
SalBow1G8140 Salvia bowleyana HOM05D000377 ORTHO05D000892 2.8e-06 56.2 142 32.4
SalBow1G8457 Salvia bowleyana HOM05D000377 ORTHO05D000892 2.8e-06 56.2 142 32.4
TWI32G0438 Tripterygium wilfordii HOM05D000377 ORTHO05D000892 2.8e-06 56.2 43 53.5
Zm00001eb337450 Zea mays HOM05D000377 ORTHO05D000892 2.8e-06 56.2 175 30.9
AT2G25900 Arabidopsis thaliana HOM05D000377 ORTHO05D000892 3.6e-06 55.8 145 33.8
MSTRG.25930 Avicennia marina HOM05D000377 ORTHO05D000892 3.6e-06 55.8 43 53.5
TWI34G0664 Tripterygium wilfordii HOM05D000377 ORTHO05D000892 3.6e-06 55.8 43 53.5
CARHR115300 Cardamine hirsuta HOM05D000377 ORTHO05D000892 4.7e-06 55.5 150 34.7
Ciclev10008633m.g Citrus clementina HOM05D000377 ORTHO05D000892 4.7e-06 55.5 141 33.3
Gohir.D08G265100 Gossypium hirsutum HOM05D000377 ORTHO05D000892 4.7e-06 55.5 43 51.2
Gorai.004G283000 Gossypium raimondii HOM05D000377 ORTHO05D000892 4.7e-06 55.5 43 51.2
Sed0003406 Sechium edule HOM05D000377 ORTHO05D000892 4.7e-06 55.5 43 48.8
CAN.G1241.3 Capsicum annuum HOM05D000377 ORTHO05D000892 6.2e-06 55.1 43 53.5
Cpa.g.sc1427.1 Carica papaya HOM05D000377 ORTHO05D000892 6.2e-06 55.1 43 51.2
Cfa017917 Carpinus fangiana HOM05D000377 ORTHO05D000892 6.2e-06 55.1 43 51.2
CiPaw.03G220700 Carya illinoinensis HOM05D000377 ORTHO05D000892 6.2e-06 55.1 43 51.2
ClCG03G015890 Citrullus lanatus HOM05D000377 ORTHO05D000892 6.2e-06 55.1 43 51.2
COL.COLO4_18264 Corchorus olitorius HOM05D000377 ORTHO05D000892 6.2e-06 55.1 43 51.2
Haze_18231 Corylus avellana HOM05D000377 ORTHO05D000892 6.2e-06 55.1 43 51.2
MELO3C015436.2 Cucumis melo HOM05D000377 ORTHO05D000892 6.2e-06 55.1 43 51.2
CsaV3_1G040060 Cucumis sativus L. HOM05D000377 ORTHO05D000892 6.2e-06 55.1 43 51.2
CsaV3_UNG046340 Cucumis sativus L. HOM05D000377 ORTHO05D000892 6.2e-06 55.1 43 51.2
Dinv42278 Davidia involucrata HOM05D000377 ORTHO05D000892 6.2e-06 55.1 43 51.2
Eucgr.C03701 Eucalyptus grandis HOM05D000377 ORTHO05D000892 6.2e-06 55.1 139 32.4
Glyma.08G031400 Glycine max HOM05D000377 ORTHO05D000892 6.2e-06 55.1 43 51.2
Gohir.A07G009400 Gossypium hirsutum HOM05D000377 ORTHO05D000892 6.2e-06 55.1 43 51.2
Gohir.D07G009700 Gossypium hirsutum HOM05D000377 ORTHO05D000892 6.2e-06 55.1 43 51.2
Gorai.001G009900 Gossypium raimondii HOM05D000377 ORTHO05D000892 6.2e-06 55.1 43 51.2
Manes.03G029600 Manihot esculenta HOM05D000377 ORTHO05D000892 6.2e-06 55.1 43 51.2
Manes.16G105900 Manihot esculenta HOM05D000377 ORTHO05D000892 6.2e-06 55.1 43 51.2
Os01g0192000 Oryza sativa ssp. japonica HOM05D000377 ORTHO05D000892 6.2e-06 55.1 43 51.2
Os05g0195200 Oryza sativa ssp. japonica HOM05D000377 ORTHO05D000892 6.2e-06 55.1 117 31.6
Sed0011162 Sechium edule HOM05D000377 ORTHO05D000892 6.2e-06 55.1 43 48.8
THA.LOC104803740 Tarenaya hassleriana HOM05D000377 ORTHO05D000892 6.2e-06 55.1 43 51.2
Thecc.09G095900 Theobroma cacao HOM05D000377 ORTHO05D000892 6.2e-06 55.1 43 51.2
Carub.0003s3409 Capsella rubella HOM05D000377 ORTHO05D000892 8.0e-06 54.7 43 51.2
ECA236G0337 Erigeron canadensis HOM05D000377 ORTHO05D000892 8.0e-06 54.7 138 31.2
Thhalv10025226m.g Eutrema salsugineum HOM05D000377 ORTHO05D000892 8.0e-06 54.7 43 51.2
MBI04_g06983_MAGBIO Magnolia biondii HOM05D000377 ORTHO05D000892 8.0e-06 54.7 43 51.2
MBI04_g35673_MAGBIO Magnolia biondii HOM05D000377 ORTHO05D000892 8.0e-06 54.7 43 51.2
Manes.16G076700 Manihot esculenta HOM05D000377 ORTHO05D000892 8.0e-06 54.7 43 51.2
Nitab4.5_0009098g0010 Nicotiana tabacum HOM05D000377 ORTHO05D000892 8.0e-06 54.7 43 51.2
PRCOL_00003872 Prasinoderma coloniale HOM05D000377 ORTHO05D000892 8.0e-06 54.7 43 53.5
PRCOL_00004035 Prasinoderma coloniale HOM05D000377 ORTHO05D000892 8.0e-06 54.7 43 53.5
THA.LOC104814579 Tarenaya hassleriana HOM05D000377 ORTHO05D000892 8.0e-06 54.7 43 51.2
HPP92_008790 Vanilla planifolia HOM05D000377 ORTHO05D000892 8.0e-06 54.7 43 48.8


User provided reference genes

Program Settings