Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3s30_160 Physcomitrium patens HOM05D018433 ORTHO05D020354 0.0e+00 2613.6 1355 100.0
Ca_29403_v3 Cicer arietinum L. HOM05D018433 ORTHO05D020354 4.0e-23 115.2 252 31.7
Pp3s30_150 Physcomitrium patens HOM05D012678 ORTHO05D014174 1.1e-20 107.1 423 25.5
Cfa025626 Carpinus fangiana HOM05D018433 ORTHO05D020354 3.5e-19 102.1 425 23.5
Cfa022546 Carpinus fangiana HOM05D012678 ORTHO05D014174 5.7e-17 94.7 238 28.2
Aa31LG11G10130 Aethionema arabicum HOM05D001235 ORTHO05D005684 3.3e-09 68.9 338 24.3
Carub.0006s2413 Capsella rubella HOM05D001235 ORTHO05D005684 4.3e-09 68.6 205 29.3
AT5G26570 Arabidopsis thaliana HOM05D001235 ORTHO05D005684 7.4e-09 67.8 189 30.7
Cfa027360 Carpinus fangiana HOM05D018433 ORTHO05D020354 7.4e-09 67.8 415 26.0
BcaC03g17860 Brassica carinata HOM05D001235 ORTHO05D005684 9.7e-09 67.4 205 28.3
A02p39300 Brassica napus HOM05D001235 ORTHO05D005684 9.7e-09 67.4 205 28.8
BraA02t08895Z Brassica rapa HOM05D001235 ORTHO05D005684 9.7e-09 67.4 205 28.8
SMO146G0043 Selaginella moellendorffii HOM05D001235 ORTHO05D005684 9.7e-09 67.4 148 31.8
Pp3s30_250 Physcomitrium patens HOM05D037711 ORTHO05D016913 1.3e-08 67.0 169 29.0
HPP92_009959 Vanilla planifolia HOM05D001235 ORTHO05D005684 1.3e-08 67.0 197 28.9
BcaB07g29956 Brassica carinata HOM05D001235 ORTHO05D005684 1.6e-08 66.6 205 27.3
C02p59020 Brassica napus HOM05D001235 ORTHO05D005684 1.6e-08 66.6 205 28.3
BolC2t11957H Brassica oleracea HOM05D001235 ORTHO05D005684 1.6e-08 66.6 205 26.8
AL6G38320 Arabidopsis lyrata HOM05D001235 ORTHO05D005684 2.8e-08 65.9 148 31.8
BcaC04g23619 Brassica carinata HOM05D001235 ORTHO05D005684 3.7e-08 65.5 148 31.1
C09p06430 Brassica napus HOM05D001235 ORTHO05D005684 3.7e-08 65.5 148 31.1
BolC9t53563H Brassica oleracea HOM05D001235 ORTHO05D005684 3.7e-08 65.5 148 31.1
CARHR187040 Cardamine hirsuta HOM05D001235 ORTHO05D005684 3.7e-08 65.5 148 31.1
Cfa023656 Carpinus fangiana HOM05D012678 ORTHO05D014174 4.8e-08 65.1 368 24.2
PRCOL_00000902 Prasinoderma coloniale HOM05D001235 ORTHO05D005684 6.3e-08 64.7 115 34.8
BcaB04g19735 Brassica carinata HOM05D001235 ORTHO05D005684 8.2e-08 64.3 148 30.4
Pp3c18_14870 Physcomitrium patens HOM05D001235 ORTHO05D005684 8.2e-08 64.3 132 31.1
Pp3s30_565 Physcomitrium patens HOM05D025497 ORTHO05D014174 8.2e-08 64.3 327 21.1
Psat6g244000 Pisum sativum HOM05D001235 ORTHO05D005684 8.2e-08 64.3 148 31.8
TPR.G40801 Trifolium pratense HOM05D001235 ORTHO05D005684 8.2e-08 64.3 115 35.7
Gorai.006G226300 Gossypium raimondii HOM05D001235 ORTHO05D005684 1.1e-07 63.9 343 23.9
Medtr6g093240 Medicago truncatula HOM05D001235 ORTHO05D005684 1.1e-07 63.9 115 33.9
Sp2g21450 Schrenkiella parvula HOM05D001235 ORTHO05D005684 1.1e-07 63.9 148 31.1
Medtr1g117000 Medicago truncatula HOM05D001235 ORTHO05D005684 1.4e-07 63.5 115 33.9
SalBow6G1240 Salvia bowleyana HOM05D001235 ORTHO05D005684 1.4e-07 63.5 109 34.9
arahy.Tifrunner.gnm1.ann1.I3JYC0 Arachis hypogaea HOM05D001235 ORTHO05D005684 1.8e-07 63.2 131 32.1
arahy.Tifrunner.gnm1.ann1.MZNG30 Arachis hypogaea HOM05D001235 ORTHO05D005684 1.8e-07 63.2 131 32.1
EL10Ac3g07409 Beta vulgaris HOM05D001235 ORTHO05D005684 1.8e-07 63.2 160 32.5
Mapoly0096s0069 Marchantia polymorpha HOM05D001235 ORTHO05D005684 1.8e-07 63.2 220 27.7
AUR62020915 Chenopodium quinoa HOM05D001235 ORTHO05D005684 2.4e-07 62.8 115 33.9
Ca_11427_v3 Cicer arietinum L. HOM05D001235 ORTHO05D005684 2.4e-07 62.8 115 33.0
Ca_29863_v3 Cicer arietinum L. HOM05D001235 ORTHO05D005684 2.4e-07 62.8 115 33.0
MELO3C017735.2 Cucumis melo HOM05D001235 ORTHO05D005684 2.4e-07 62.8 148 30.4
Oeu001997.1 Olea europaea HOM05D001235 ORTHO05D005684 2.4e-07 62.8 148 30.4
Aqoxy5G00036 Aquilegia oxysepala HOM05D001235 ORTHO05D005684 3.1e-07 62.4 115 32.2
MSTRG.22434 Avicennia marina HOM05D001235 ORTHO05D005684 3.1e-07 62.4 148 29.1
ClCG07G015490 Citrullus lanatus HOM05D001235 ORTHO05D005684 3.1e-07 62.4 114 34.2
A09p05840 Brassica napus HOM05D001235 ORTHO05D005684 4.1e-07 62.0 119 33.6
BraA09t36226Z Brassica rapa HOM05D001235 ORTHO05D005684 4.1e-07 62.0 119 33.6
CsaV3_4G003110 Cucumis sativus L. HOM05D001235 ORTHO05D005684 4.1e-07 62.0 114 34.2
Lj5g0010068 Lotus japonicus HOM05D001235 ORTHO05D005684 4.1e-07 62.0 115 33.9
TWI73G0237 Tripterygium wilfordii HOM05D001235 ORTHO05D005684 4.1e-07 62.0 148 30.4
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 4.1e-07 62.0 139 31.7
CDE07G1609 Ceratophyllum demersum HOM05D001235 ORTHO05D005684 5.3e-07 61.6 109 35.8
Glyma.10G298000 Glycine max HOM05D001235 ORTHO05D005684 5.3e-07 61.6 115 33.9
PGR142G1880 Punica granatum HOM05D001235 ORTHO05D005684 5.3e-07 61.6 146 29.5
VMungo0720G0937 Vigna mungo HOM05D001235 ORTHO05D005684 5.3e-07 61.6 148 30.4
AUR62018504 Chenopodium quinoa HOM05D001235 ORTHO05D005684 6.9e-07 61.2 115 33.9
Hund19034 Selenicereus undatus HOM05D001235 ORTHO05D005684 6.9e-07 61.2 148 30.4
Ah.04g149690 Amaranthus hybridus HOM05D001235 ORTHO05D005684 9.0e-07 60.8 119 35.3
CAN.G681.26 Capsicum annuum HOM05D001235 ORTHO05D005684 9.0e-07 60.8 119 34.5
Peaxi162Scf00286g00547 Petunia axillaris HOM05D001235 ORTHO05D005684 9.0e-07 60.8 119 33.6
Actinidia35919 Actinidia chinensis HOM05D001235 ORTHO05D005684 1.2e-06 60.5 109 33.9
CSS0015752 Camellia sinensis var. sinensis HOM05D001235 ORTHO05D005684 1.2e-06 60.5 109 33.9
CSS0039330 Camellia sinensis var. sinensis HOM05D001235 ORTHO05D005684 1.2e-06 60.5 109 33.9
Cpa.g.sc502.2 Carica papaya HOM05D001235 ORTHO05D005684 1.2e-06 60.5 146 30.8
Cfa008685 Carpinus fangiana HOM05D001235 ORTHO05D005684 1.2e-06 60.5 109 34.9
CDE04G0849 Ceratophyllum demersum HOM05D001235 ORTHO05D005684 1.2e-06 60.5 148 30.4
Dinv13678 Davidia involucrata HOM05D001235 ORTHO05D005684 1.2e-06 60.5 109 33.9
Dinv27164 Davidia involucrata HOM05D001235 ORTHO05D005684 1.2e-06 60.5 148 28.4
Eucgr.H00494 Eucalyptus grandis HOM05D001235 ORTHO05D005684 1.2e-06 60.5 109 33.0
Lalb_Chr02g0144531 Lupinus albus HOM05D001235 ORTHO05D005684 1.2e-06 60.5 109 33.0
PSO170G5672 Papaver somniferum HOM05D001235 ORTHO05D005684 1.2e-06 60.5 115 33.9
PSO357G0146 Papaver somniferum HOM05D001235 ORTHO05D005684 1.2e-06 60.5 115 33.0
Phvul.007G001400 Phaseolus vulgaris HOM05D001235 ORTHO05D005684 1.2e-06 60.5 148 30.4
Sed0003584 Sechium edule HOM05D001235 ORTHO05D005684 1.2e-06 60.5 211 28.0
Sc19g0007540 Simmondsia chinensis HOM05D001235 ORTHO05D005684 1.2e-06 60.5 146 31.5
Solyc09g098040.3 Solanum lycopersicum HOM05D001235 ORTHO05D005684 1.2e-06 60.5 109 35.8
Sopen09g035960 Solanum pennellii HOM05D001235 ORTHO05D005684 1.2e-06 60.5 109 35.8
Atru.chr3.1828 Acer truncatum HOM05D001235 ORTHO05D005684 1.5e-06 60.1 144 31.9
CiPaw.01G110000 Carya illinoinensis HOM05D001235 ORTHO05D005684 1.5e-06 60.1 109 33.0
Ciclev10006658m.g Citrus clementina HOM05D001235 ORTHO05D005684 1.5e-06 60.1 130 31.5
Haze_11704 Corylus avellana HOM05D001235 ORTHO05D005684 1.5e-06 60.1 109 33.9
Gohir.D09G202400 Gossypium hirsutum HOM05D001235 ORTHO05D005684 1.5e-06 60.1 289 24.6
MD04G1025900 Malus domestica HOM05D001235 ORTHO05D005684 1.5e-06 60.1 109 32.1
Potri.002G234500 Populus trichocarpa HOM05D001235 ORTHO05D005684 1.5e-06 60.1 109 33.0
Potri.014G147900 Populus trichocarpa HOM05D001235 ORTHO05D005684 1.5e-06 60.1 109 33.9
PGSC0003DMG400016613 Solanum tuberosum HOM05D001235 ORTHO05D005684 1.5e-06 60.1 109 35.8
Cc03_g10000 Coffea canephora HOM05D001235 ORTHO05D005684 2.0e-06 59.7 148 28.4
Glyma.20G249000 Glycine max HOM05D001235 ORTHO05D005684 2.0e-06 59.7 115 33.0
Migut.N03329 Erythranthe guttata HOM05D001235 ORTHO05D005684 2.6e-06 59.3 116 32.8
Prupe.1G175200 Prunus persica HOM05D001235 ORTHO05D005684 2.6e-06 59.3 109 32.1
Sabra02G0178900 Salix brachista HOM05D001235 ORTHO05D005684 2.6e-06 59.3 109 33.0
Sabra14G0111700 Salix brachista HOM05D001235 ORTHO05D005684 2.6e-06 59.3 109 33.0
TAR362G0786 Trochodendron aralioides HOM05D001235 ORTHO05D005684 2.6e-06 59.3 109 33.9
Cre17.g719900 Chlamydomonas reinhardtii HOM05D001235 ORTHO05D005684 3.4e-06 58.9 150 30.7
COL.COLO4_08688 Corchorus olitorius HOM05D001235 ORTHO05D005684 3.4e-06 58.9 109 35.8
Gohir.D10G133800 Gossypium hirsutum HOM05D001235 ORTHO05D005684 3.4e-06 58.9 114 34.2
Gorai.011G147600 Gossypium raimondii HOM05D001235 ORTHO05D005684 3.4e-06 58.9 114 34.2
Manes.05G194300 Manihot esculenta HOM05D001235 ORTHO05D005684 3.4e-06 58.9 109 33.9
MCO05G382 Micromonas commoda HOM05D001235 ORTHO05D005684 3.4e-06 58.9 113 35.4
Nitab4.5_0001693g0060 Nicotiana tabacum HOM05D001235 ORTHO05D005684 3.4e-06 58.9 109 34.9
Nitab4.5_0012294g0010 Nicotiana tabacum HOM05D001235 ORTHO05D005684 3.4e-06 58.9 109 34.9
THA.LOC104822294 Tarenaya hassleriana HOM05D001235 ORTHO05D005684 3.4e-06 58.9 148 29.1
Thecc.04G188100 Theobroma cacao HOM05D001235 ORTHO05D005684 3.4e-06 58.9 114 33.3
CBR_g30239 Chara braunii HOM05D001235 ORTHO05D005684 4.5e-06 58.5 131 30.5
Duzib151G0601 Durio zibethinus HOM05D001235 ORTHO05D005684 4.5e-06 58.5 114 31.6
SEGI_29879 Sequoiadendron giganteum HOM05D001235 ORTHO05D005684 4.5e-06 58.5 139 31.7
CANSAT78G1591 Cannabis sativa HOM05D001235 ORTHO05D005684 5.9e-06 58.2 144 31.2
DCAR_027478 Daucus carota HOM05D001235 ORTHO05D005684 5.9e-06 58.2 109 31.2
FvH4_4g12510 Fragaria vesca HOM05D001235 ORTHO05D005684 5.9e-06 58.2 112 34.8
FAN07G2568 Fragaria x ananassa HOM05D001235 ORTHO05D005684 5.9e-06 58.2 112 34.8
FAN12G0235 Fragaria x ananassa HOM05D001235 ORTHO05D005684 5.9e-06 58.2 112 34.8
Nn1g08260 Nelumbo nucifera HOM05D001235 ORTHO05D005684 5.9e-06 58.2 116 32.8
FAN17G0427 Fragaria x ananassa HOM05D001235 ORTHO05D005684 7.7e-06 57.8 112 34.8
FAN22G1075 Fragaria x ananassa HOM05D001235 ORTHO05D005684 7.7e-06 57.8 112 34.8
RcHm_v2.0_Chr4g0411331 Rosa chinensis HOM05D001235 ORTHO05D005684 7.7e-06 57.8 109 33.0
Duzib212G0549 Durio zibethinus HOM05D001235 ORTHO05D005684 1.0e-05 57.4 114 31.6
PGR142G1126 Punica granatum HOM05D001352 ORTHO05D001354 1.0e-05 57.4 152 28.3
QL06p027955 Quercus lobata HOM05D001235 ORTHO05D005684 1.0e-05 57.4 114 32.5


User provided reference genes

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