Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 0.0e+00 1568.9 820 100.0
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 0.0e+00 1568.9 820 100.0
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 0.0e+00 1277.3 818 83.0
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 7.7e-227 791.2 821 53.2
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 4.5e-219 765.4 649 62.7
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 2.2e-218 763.1 836 51.4
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 2.2e-213 746.5 866 50.0
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 6.5e-210 734.9 851 48.6
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 4.2e-209 732.3 851 48.8
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 5.7e-206 721.8 851 49.2
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 5.2e-199 698.7 845 48.6
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 4.4e-198 695.7 852 47.7
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 2.8e-197 693.0 846 48.5
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 7.0e-196 688.3 848 47.2
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 1.6e-195 687.2 849 47.7
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 2.0e-195 686.8 854 48.0
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 1.0e-194 684.5 843 48.0
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 6.5e-194 681.8 848 47.2
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 8.6e-194 681.4 855 46.9
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 1.9e-193 680.2 851 46.4
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 4.2e-193 679.1 851 46.5
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 4.2e-193 679.1 853 47.7
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 9.5e-193 677.9 857 46.0
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 1.6e-192 677.2 887 46.6
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 2.1e-192 676.8 846 48.1
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 2.8e-192 676.4 853 45.8
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 3.6e-192 676.0 844 46.7
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 6.1e-192 675.2 853 47.0
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 8.0e-192 674.9 853 46.5
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 4.0e-191 672.5 842 47.1
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 6.8e-191 671.8 845 46.4
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 2.6e-190 669.8 851 45.5
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 9.8e-190 667.9 837 45.6
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 1.7e-189 667.2 841 47.4
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 4.9e-189 665.6 844 47.0
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 4.9e-189 665.6 849 46.6
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 6.3e-189 665.2 856 46.8
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 6.3e-189 665.2 851 46.9
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 6.3e-189 665.2 849 46.1
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 8.3e-189 664.8 850 46.7
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 1.8e-188 663.7 852 45.5
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 1.8e-188 663.7 848 46.6
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 2.4e-188 663.3 848 46.6
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 2.4e-188 663.3 856 46.5
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 5.4e-188 662.1 848 46.5
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 5.4e-188 662.1 855 47.1
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 9.2e-188 661.4 850 46.8
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 9.2e-188 661.4 851 46.4
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 9.2e-188 661.4 854 46.3
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 1.2e-187 661.0 846 46.1
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 2.0e-187 660.2 830 47.2
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 3.5e-187 659.4 833 46.8
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 5.9e-187 658.7 850 46.4
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 7.8e-187 658.3 849 46.1
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 7.8e-187 658.3 840 46.9
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.0e-186 657.9 854 47.0
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 1.3e-186 657.5 854 45.8
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 1.7e-186 657.1 830 47.1
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 1.7e-186 657.1 830 47.1
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 1.7e-186 657.1 852 45.8
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 2.3e-186 656.8 856 45.1
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 3.8e-186 656.0 839 45.4
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 3.8e-186 656.0 854 45.2
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 5.0e-186 655.6 847 46.3
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 6.6e-186 655.2 848 46.2
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 6.6e-186 655.2 850 45.2
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 1.1e-185 654.4 844 45.6
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 1.5e-185 654.1 837 46.0
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 1.9e-185 653.7 830 46.6
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 2.5e-185 653.3 831 46.9
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 2.5e-185 653.3 831 46.9
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 2.5e-185 653.3 850 45.3
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 5.6e-185 652.1 837 47.3
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 2.1e-184 650.2 852 45.4
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 2.8e-184 649.8 859 44.8
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 3.6e-184 649.4 844 45.1
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 3.6e-184 649.4 819 46.3
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 6.1e-184 648.7 855 46.0
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 6.1e-184 648.7 848 46.1
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 1.0e-183 647.9 826 47.2
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 1.8e-183 647.1 840 45.7
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 5.8e-182 642.1 840 45.2
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 5.8e-182 642.1 808 47.5
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 9.8e-182 641.3 844 45.7
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 1.7e-181 640.6 809 47.0
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 4.9e-181 639.0 843 45.6
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 6.4e-181 638.6 850 44.8
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 1.8e-180 637.1 837 46.4
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 1.2e-179 634.4 864 46.2
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 2.7e-179 633.3 857 44.9
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 3.5e-179 632.9 843 45.1
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.0e-178 631.3 836 43.3
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 2.5e-177 626.7 832 45.1
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 4.3e-177 625.9 835 44.4
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 3.6e-176 622.9 675 51.0
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 5.2e-175 619.0 852 45.0
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 4.4e-174 615.9 897 43.1
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 5.8e-174 615.5 917 41.4
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 9.8e-174 614.8 845 44.3
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 6.4e-173 612.1 812 45.4
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 1.4e-172 610.9 838 42.5
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 3.2e-172 609.8 853 43.7
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 2.7e-171 606.7 820 44.9
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 1.0e-170 604.7 652 50.3
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 3.9e-170 602.8 817 44.7
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 5.6e-169 599.0 817 44.3
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 5.6e-169 599.0 651 50.5
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 1.2e-168 597.8 651 50.2
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 2.0e-166 590.5 946 40.2
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 2.2e-165 587.0 857 43.1
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 4.9e-165 585.9 820 43.9
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 1.6e-163 580.9 836 43.4
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 1.1e-161 574.7 830 43.3
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 6.2e-160 568.9 729 45.1
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 3.4e-158 563.1 863 40.1
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 4.4e-158 562.8 817 43.1
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 5.4e-156 555.8 836 41.0
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 6.7e-138 495.7 628 47.3
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 9.0e-135 485.3 760 42.5
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 2.4e-127 460.7 705 42.4
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 4.8e-120 436.4 455 51.6
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 1.0e-114 418.7 485 50.3
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 5.7e-113 412.9 438 51.6
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 2.6e-102 377.5 641 39.2
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 1.7e-93 348.2 767 32.6
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 3.6e-91 340.5 530 41.3
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 2.0e-86 324.7 619 36.2
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 5.2e-66 256.9 455 39.6
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 3.5e-62 244.2 338 46.2
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 4.4e-57 227.3 457 37.0
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 1.5e-52 212.2 390 37.4
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 6.2e-51 206.8 204 56.4
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 2.1e-46 191.8 208 49.0
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 7.3e-44 183.3 197 49.2
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 1.2e-43 182.6 197 49.2
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 1.2e-43 182.6 197 49.2
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 2.8e-43 181.4 212 46.2
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 1.2e-41 176.0 290 40.0
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 2.9e-40 171.4 242 40.5
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 7.1e-39 166.8 166 49.4
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 2.2e-32 145.2 122 56.6
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 4.5e-25 120.9 88 62.5
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 4.5e-25 120.9 88 62.5
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 9.9e-25 119.8 358 30.2
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 9.9e-25 119.8 92 59.8
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.8e-21 109.0 202 39.1
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 3.9e-21 107.8 140 45.0
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 3.8e-16 91.3 134 40.3
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.5e-15 88.6 347 24.5
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 7.9e-14 83.6 80 50.0
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.0e-13 83.2 89 46.1
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.5e-12 79.3 194 30.9
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 1.9e-12 79.0 70 55.7
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 5.7e-12 77.4 106 41.5
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 1.8e-10 72.4 47 70.2
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 3.1e-10 71.6 77 49.4
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 1.5e-09 69.3 72 48.6
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 3.8e-08 64.7 73 43.8
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 9.3e-07 60.1 52 55.8
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 2.1e-06 58.9 77 44.2
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 3.5e-06 58.2 66 47.0
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 3.5e-06 58.2 50 52.0


User provided reference genes

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