Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c9_8840 Physcomitrium patens HOM05D007125 ORTHO05D008766 0.0e+00 3192.9 1618 100.0
Mapoly0113s0048 Marchantia polymorpha HOM05D007125 ORTHO05D008766 0.0e+00 1110.1 1317 48.2
AagrBONN_evm.TU.Sc2ySwM_228.1352 Anthoceros agrestis HOM05D007125 ORTHO05D008766 0.0e+00 1089.7 1694 42.0
Pp3c3_16960 Physcomitrium patens HOM05D007125 ORTHO05D008766 1.5e-287 993.8 1294 46.1
SMO358G0023 Selaginella moellendorffii HOM05D007125 ORTHO05D008766 2.9e-286 989.6 1654 40.7
ATR0618G048 Amborella trichopoda HOM05D007125 ORTHO05D008766 7.1e-200 702.6 1214 36.5
Aqoxy1G00714 Aquilegia oxysepala HOM05D007125 ORTHO05D008766 4.4e-194 683.3 1193 37.6
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 5.8e-194 682.9 863 43.8
PSO384G0252 Papaver somniferum HOM05D007125 ORTHO05D008766 1.2e-186 658.7 1194 36.1
Cpa.g.sc56.115 Carica papaya HOM05D007125 ORTHO05D008766 2.7e-183 647.5 881 42.6
Haze_20950 Corylus avellana HOM05D007125 ORTHO05D008766 1.8e-182 644.8 1090 37.3
Ciclev10013588m.g Citrus clementina HOM05D007125 ORTHO05D008766 3.3e-181 640.6 997 39.0
Potri.006G096400 Populus trichocarpa HOM05D007125 ORTHO05D008766 2.1e-180 637.9 1036 38.8
TAR623G0133 Trochodendron aralioides HOM05D007125 ORTHO05D008766 5.3e-179 633.3 1043 37.5
Actinidia29131 Actinidia chinensis HOM05D007125 ORTHO05D008766 6.9e-179 632.9 974 37.3
CANSAT35G1716 Cannabis sativa HOM05D007125 ORTHO05D008766 6.9e-179 632.9 880 40.2
Sabra06G0074100 Salix brachista HOM05D007125 ORTHO05D008766 6.4e-177 626.3 1017 38.7
CiPaw.09G206100 Carya illinoinensis HOM05D007125 ORTHO05D008766 2.4e-176 624.4 981 40.0
Duzib093G0828 Durio zibethinus HOM05D007125 ORTHO05D008766 2.3e-174 617.8 1254 33.9
Thecc.05G022200 Theobroma cacao HOM05D007125 ORTHO05D008766 6.7e-174 616.3 983 38.0
GSVIVG01034011001 Vitis vinifera HOM05D007125 ORTHO05D008766 5.6e-173 613.2 1000 38.5
Nn2g11366 Nelumbo nucifera HOM05D007125 ORTHO05D008766 3.7e-172 610.5 989 38.3
COL.COLO4_14596 Corchorus olitorius HOM05D007125 ORTHO05D008766 8.2e-172 609.4 980 38.5
TWI77G0961 Tripterygium wilfordii HOM05D007125 ORTHO05D008766 1.1e-171 609.0 978 37.8
vmacro20236 Vaccinium macrocarpon HOM05D007125 ORTHO05D008766 9.0e-171 605.9 897 38.5
Sed0001650 Sechium edule HOM05D007125 ORTHO05D008766 1.7e-169 601.7 1162 34.9
CsaV3_4G025990 Cucumis sativus L. HOM05D007125 ORTHO05D008766 3.2e-168 597.4 865 38.6
Lj2A79T37 Lonicera japonica HOM05D007125 ORTHO05D008766 3.5e-167 594.0 923 38.7
Sopen09g007020 Solanum pennellii HOM05D007125 ORTHO05D008766 1.8e-166 591.7 904 37.9
Hma1.2p1_0763F.1_g214640 Hydrangea macrophylla HOM05D007125 ORTHO05D008766 1.1e-165 589.0 769 42.1
Phvul.008G107900 Phaseolus vulgaris HOM05D007125 ORTHO05D008766 1.1e-165 589.0 1140 34.6
Nitab4.5_0000008g0740 Nicotiana tabacum HOM05D007125 ORTHO05D008766 4.3e-165 587.0 889 39.5
Solyc09g013160.3 Solanum lycopersicum HOM05D007125 ORTHO05D008766 5.7e-165 586.6 905 38.2
Dinv35513 Davidia involucrata HOM05D007125 ORTHO05D008766 2.8e-164 584.3 977 37.7
Nitab4.5_0009193g0010 Nicotiana tabacum HOM05D007125 ORTHO05D008766 3.1e-163 580.9 890 39.6
PGR031G2086 Punica granatum HOM05D007125 ORTHO05D008766 1.9e-160 571.6 769 42.4
ClCG04G007250 Citrullus lanatus HOM05D007125 ORTHO05D008766 1.6e-159 568.5 975 35.6
THA.LOC104823281 Tarenaya hassleriana HOM05D007125 ORTHO05D008766 7.9e-159 566.2 868 38.2
BraA01t04316Z Brassica rapa HOM05D007125 ORTHO05D008766 1.8e-155 555.1 980 35.7
BcaC09g48007 Brassica carinata HOM05D007125 ORTHO05D008766 9.1e-155 552.7 975 35.8
BolC1t05475H Brassica oleracea HOM05D007125 ORTHO05D008766 1.5e-154 552.0 992 35.3
CARHR083450 Cardamine hirsuta HOM05D007125 ORTHO05D008766 1.7e-153 548.5 882 37.1
arahy.Tifrunner.gnm1.ann1.A1GI61 Arachis hypogaea HOM05D007125 ORTHO05D008766 3.8e-153 547.4 1031 35.5
arahy.Tifrunner.gnm1.ann1.8EY2MC Arachis hypogaea HOM05D007125 ORTHO05D008766 1.6e-151 542.0 861 38.3
Lsat_1_v5_gn_8_99881 Lactuca sativa HOM05D007125 ORTHO05D008766 7.9e-151 539.7 864 35.4
Glyma.07G144800 Glycine max HOM05D007125 ORTHO05D008766 1.4e-150 538.9 817 38.8
Carub.0003s0824 Capsella rubella HOM05D007125 ORTHO05D008766 2.3e-150 538.1 973 35.7
Lj1g0008640 Lotus japonicus HOM05D007125 ORTHO05D008766 6.7e-150 536.6 872 38.3
Ca_09172_v3 Cicer arietinum L. HOM05D007125 ORTHO05D008766 2.0e-149 535.0 858 37.5
AL3G20150 Arabidopsis lyrata HOM05D007125 ORTHO05D008766 5.7e-149 533.5 977 34.9
Oeu044362.1 Olea europaea HOM05D007125 ORTHO05D008766 2.6e-146 524.6 940 36.0
DCAR_024035 Daucus carota HOM05D007125 ORTHO05D008766 5.0e-145 520.4 999 34.2
TPR.G1550 Trifolium pratense HOM05D007125 ORTHO05D008766 5.0e-145 520.4 751 39.3
Migut.J00225 Erythranthe guttata HOM05D007125 ORTHO05D008766 3.3e-141 507.7 964 33.5
CDE04G1007 Ceratophyllum demersum HOM05D007125 ORTHO05D008766 6.3e-140 503.4 1086 32.0
SalBow5G1282 Salvia bowleyana HOM05D007125 ORTHO05D008766 3.5e-138 497.7 1065 32.8
AT3G09080 Arabidopsis thaliana HOM05D007125 ORTHO05D008766 1.3e-137 495.7 886 35.1
MELO3C003224.2 Cucumis melo HOM05D007125 ORTHO05D008766 8.8e-134 483.0 869 34.3
ECA236G2625 Erigeron canadensis HOM05D007125 ORTHO05D008766 2.0e-133 481.9 875 34.1
VMungo1383G2599 Vigna mungo HOM05D007125 ORTHO05D008766 4.8e-132 477.2 1183 31.1
Sp3g07530 Schrenkiella parvula HOM05D007125 ORTHO05D008766 1.8e-131 475.3 774 37.2
HanXRQChr04g0102021 Helianthus annuus HOM05D007125 ORTHO05D008766 3.5e-130 471.1 664 39.2
Lalb_Chr03g0042991 Lupinus albus HOM05D007125 ORTHO05D008766 6.8e-126 456.8 748 36.8
Psat3g131480 Pisum sativum HOM05D007125 ORTHO05D008766 3.4e-125 454.5 876 33.3
Gohir.D09G158900 Gossypium hirsutum HOM05D007125 ORTHO05D008766 3.5e-122 444.5 782 36.3
Gorai.006G180600 Gossypium raimondii HOM05D007125 ORTHO05D008766 2.8e-116 424.9 782 35.4
Manes.08G087700 Manihot esculenta HOM05D007125 ORTHO05D008766 8.6e-113 413.3 904 33.2
MCO08G172 Micromonas commoda HOM05D007125 ORTHO05D008766 2.8e-103 381.7 1322 27.7
Aa31LG3G1610 Aethionema arabicum HOM05D007125 ORTHO05D008766 1.4e-102 379.4 1000 29.9
SEGI_28201 Sequoiadendron giganteum HOM05D007125 ORTHO05D008766 9.8e-101 373.2 382 49.5
Cre01.g034600 Chlamydomonas reinhardtii HOM05D007125 ORTHO05D008766 1.4e-99 369.4 796 32.2
Thhalv10022253m.g Eutrema salsugineum HOM05D007125 ORTHO05D008766 1.2e-95 356.3 993 30.0
Sc01g0006770 Simmondsia chinensis HOM05D007125 ORTHO05D008766 2.6e-93 348.6 523 39.8
MSTRG.19028 Avicennia marina HOM05D007125 ORTHO05D008766 3.7e-92 344.7 638 35.3
PGSC0003DMG400020348 Solanum tuberosum HOM05D007125 ORTHO05D008766 8.3e-92 343.6 568 37.5
Gohir.A09G163400 Gossypium hirsutum HOM05D007125 ORTHO05D008766 1.9e-88 332.4 573 37.7
Atru.chr8.2198 Acer truncatum HOM05D007125 ORTHO05D008766 3.6e-87 328.2 560 37.9
Medtr7g066770 Medicago truncatula HOM05D007125 ORTHO05D008766 6.6e-81 307.4 477 37.3
CSS0003995 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 4.5e-69 268.1 376 39.4
Medtr7g066750 Medicago truncatula HOM05D007125 ORTHO05D008766 2.8e-39 169.1 239 39.3
Atru.chr8.2197 Acer truncatum HOM05D007125 ORTHO05D008766 6.3e-39 167.9 198 46.5
HanXRQChr04g0102011 Helianthus annuus HOM05D007125 ORTHO05D008766 2.5e-27 129.4 321 31.5
SEGI_02347 Sequoiadendron giganteum HOM05D007125 ORTHO05D008766 4.7e-26 125.2 817 26.3
Cfa025266 Carpinus fangiana HOM05D007125 ORTHO05D008766 3.9e-25 122.1 691 24.0
unitig_27.g24821 Utricularia gibba HOM05D007125 ORTHO05D008766 6.7e-25 121.3 593 22.9
Sc01g0006780 Simmondsia chinensis HOM05D007125 ORTHO05D008766 2.2e-23 116.3 110 47.3
MSTRG.19029 Avicennia marina HOM05D007125 ORTHO05D008766 2.4e-22 112.8 101 49.5
Sc01g0006790 Simmondsia chinensis HOM05D007125 ORTHO05D008766 4.7e-18 98.6 299 29.8
arahy.Tifrunner.gnm1.ann1.KE62B1 Arachis hypogaea HOM05D007125 ORTHO05D008766 9.7e-16 90.9 199 31.7
arahy.Tifrunner.gnm1.ann1.IUS8SN Arachis hypogaea HOM05D007125 ORTHO05D008766 2.2e-15 89.7 205 30.2
Actinidia13779 Actinidia chinensis HOM05D007125 ORTHO05D008766 3.7e-15 89.0 104 46.2
arahy.Tifrunner.gnm1.ann1.KIE2XR Arachis hypogaea HOM05D007125 ORTHO05D008766 1.1e-14 87.4 199 31.2
VMungo1383G1324 Vigna mungo HOM05D007125 ORTHO05D008766 4.1e-14 85.5 85 50.6
CSS0006466 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 4.5e-13 82.0 91 45.1
PRCOL_00005200 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 3.8e-12 79.0 196 32.1
Lalb_Chr03g0042981 Lupinus albus HOM05D007125 ORTHO05D008766 1.6e-10 73.6 90 42.2
GSVIVG01011041001 Vitis vinifera HOM05D002999 ORTHO05D003137 2.3e-09 69.7 293 26.6
Glyma.11G027500 Glycine max HOM05D000526 ORTHO05D002053 8.8e-09 67.8 277 22.4
Cre14.g613400 Chlamydomonas reinhardtii HOM05D037949 ORTHO05D034420 4.4e-08 65.5 201 24.4
Sopen06g003630 Solanum pennellii HOM05D002999 ORTHO05D003137 7.5e-08 64.7 271 23.6
AagrBONN_evm.TU.Sc2ySwM_228.3731 Anthoceros agrestis HOM05D002999 ORTHO05D003137 1.7e-07 63.5 275 23.3
HanXRQChr00c0537g0575611 Helianthus annuus HOM05D002999 ORTHO05D003137 1.7e-07 63.5 283 22.6
Manes.05G070800 Manihot esculenta HOM05D002999 ORTHO05D003137 1.7e-07 63.5 288 23.3
Os02g0205400 Oryza sativa ssp. japonica HOM05D003006 ORTHO05D003438 2.2e-07 63.2 252 23.0
Solyc06g008880.3 Solanum lycopersicum HOM05D002999 ORTHO05D003137 2.2e-07 63.2 271 23.2
A02p21580 Brassica napus HOM05D000526 ORTHO05D000956 4.8e-07 62.0 260 22.3
A02p21660 Brassica napus HOM05D000526 ORTHO05D000956 4.8e-07 62.0 260 22.3
A02p21740 Brassica napus HOM05D000526 ORTHO05D000956 4.8e-07 62.0 260 22.3
Mapoly0033s0088 Marchantia polymorpha HOM05D000526 ORTHO05D000956 4.8e-07 62.0 277 20.2
Glyma.01G214500 Glycine max HOM05D000526 ORTHO05D002053 1.1e-06 60.8 262 20.6
BolC1t05511H Brassica oleracea HOM05D007125 ORTHO05D008766 1.4e-06 60.5 112 39.3
MCO13G159 Micromonas commoda HOM05D009332 ORTHO05D011893 1.4e-06 60.5 157 27.4
Eucgr.H00801 Eucalyptus grandis HOM05D000836 ORTHO05D000709 1.8e-06 60.1 269 21.6
Lsat_1_v5_gn_9_1680 Lactuca sativa HOM05D002999 ORTHO05D003137 1.8e-06 60.1 281 22.4
Phvul.002G153000 Phaseolus vulgaris HOM05D000526 ORTHO05D002053 1.8e-06 60.1 262 21.0
SalBow2G2809 Salvia bowleyana HOM05D002999 ORTHO05D003137 1.8e-06 60.1 275 23.3
Haze_25664 Corylus avellana HOM05D000836 ORTHO05D000709 3.1e-06 59.3 197 23.9
HanXRQChr10g0283101 Helianthus annuus HOM05D002999 ORTHO05D003137 3.1e-06 59.3 283 22.3
Oeu002690.1 Olea europaea HOM05D002999 ORTHO05D003137 3.1e-06 59.3 276 22.1
Potri.018G033300 Populus trichocarpa HOM05D000836 ORTHO05D000709 3.1e-06 59.3 198 25.8
ATR0794G100 Amborella trichopoda HOM05D000836 ORTHO05D000709 4.1e-06 58.9 265 24.2
CANSAT56G1037 Cannabis sativa HOM05D000836 ORTHO05D000709 5.4e-06 58.5 193 26.4
Sed0006865 Sechium edule HOM05D000836 ORTHO05D000709 5.4e-06 58.5 201 26.9
Cfa003323 Carpinus fangiana HOM05D003006 ORTHO05D003438 9.1e-06 57.8 255 22.7
Os06g0598900 Oryza sativa ssp. japonica HOM05D003006 ORTHO05D003438 9.1e-06 57.8 252 23.0


User provided reference genes

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