Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_24390 Physcomitrium patens HOM05D004887 ORTHO05D006168 2.1e-222 775.4 393 100.0
Pp3c24_20310 Physcomitrium patens HOM05D004887 ORTHO05D006168 1.5e-188 662.9 376 88.0
Mapoly0001s0555 Marchantia polymorpha HOM05D004887 ORTHO05D006168 1.2e-116 424.1 367 60.2
SMO118G0033 Selaginella moellendorffii HOM05D004887 ORTHO05D006168 5.7e-111 405.2 361 58.7
Cpa.g.sc190.13 Carica papaya HOM05D004887 ORTHO05D006168 2.9e-107 392.9 342 56.1
COL.COLO4_18471 Corchorus olitorius HOM05D004887 ORTHO05D006168 2.9e-107 392.9 342 56.1
THA.LOC104799466 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 6.5e-107 391.7 351 56.4
TAR369G0226 Trochodendron aralioides HOM05D004887 ORTHO05D006168 5.5e-106 388.7 342 57.6
MD11G1143700 Malus domestica HOM05D004887 ORTHO05D006168 7.2e-106 388.3 347 54.8
Lalb_Chr01g0003761 Lupinus albus HOM05D004887 ORTHO05D006168 9.4e-106 387.9 349 54.7
Sc21g0005570 Simmondsia chinensis HOM05D004887 ORTHO05D006168 2.7e-105 386.3 336 56.0
Glyma.11G141400 Glycine max HOM05D004887 ORTHO05D006168 3.6e-105 386.0 342 55.6
Dinv32870 Davidia involucrata HOM05D004887 ORTHO05D006168 1.0e-104 384.4 342 55.6
MD03G1097100 Malus domestica HOM05D004887 ORTHO05D006168 2.3e-104 383.3 342 55.3
Nitab4.5_0000610g0150 Nicotiana tabacum HOM05D004887 ORTHO05D006168 3.0e-104 382.9 342 55.8
EL10Ac7g15978 Beta vulgaris HOM05D004887 ORTHO05D006168 6.7e-104 381.7 342 54.4
Migut.D02114 Erythranthe guttata HOM05D004887 ORTHO05D006168 8.8e-104 381.3 343 55.1
PGR102G2111 Punica granatum HOM05D004887 ORTHO05D006168 8.8e-104 381.3 352 54.3
Aqoxy4G02983 Aquilegia oxysepala HOM05D004887 ORTHO05D006168 1.1e-103 380.9 342 56.1
Hund18927 Selenicereus undatus HOM05D004887 ORTHO05D006168 1.1e-103 380.9 332 56.9
Solyc11g073300.2 Solanum lycopersicum HOM05D004887 ORTHO05D006168 1.1e-103 380.9 342 55.0
FAN21G1310 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.5e-103 380.6 342 54.7
Sopen11g030920 Solanum pennellii HOM05D004887 ORTHO05D006168 1.5e-103 380.6 342 55.0
arahy.Tifrunner.gnm1.ann1.1V42NR Arachis hypogaea HOM05D004887 ORTHO05D006168 2.0e-103 380.2 343 55.4
arahy.Tifrunner.gnm1.ann1.31UC9J Arachis hypogaea HOM05D004887 ORTHO05D006168 2.0e-103 380.2 343 55.4
Migut.G01105 Erythranthe guttata HOM05D004887 ORTHO05D006168 2.0e-103 380.2 343 54.8
Migut.G01142 Erythranthe guttata HOM05D004887 ORTHO05D006168 2.0e-103 380.2 343 54.8
Oeu041027.1 Olea europaea HOM05D004887 ORTHO05D006168 2.6e-103 379.8 355 53.8
VMungo1127G0043 Vigna mungo HOM05D004887 ORTHO05D006168 3.3e-103 379.4 342 55.0
Hma1.2p1_0624F.1_g191380 Hydrangea macrophylla HOM05D004887 ORTHO05D006168 4.4e-103 379.0 342 55.0
Actinidia37217 Actinidia chinensis HOM05D004887 ORTHO05D006168 7.4e-103 378.3 346 55.5
FvH4_3g35470 Fragaria vesca HOM05D004887 ORTHO05D006168 7.4e-103 378.3 342 54.4
HanXRQChr04g0107001 Helianthus annuus HOM05D004887 ORTHO05D006168 7.4e-103 378.3 345 54.8
BcaB08g36206 Brassica carinata HOM05D004887 ORTHO05D006168 9.7e-103 377.9 344 54.7
RcHm_v2.0_Chr5g0063631 Rosa chinensis HOM05D004887 ORTHO05D006168 9.7e-103 377.9 342 54.4
CANSAT54G1644 Cannabis sativa HOM05D004887 ORTHO05D006168 1.3e-102 377.5 375 52.3
PSO384G2944 Papaver somniferum HOM05D004887 ORTHO05D006168 1.7e-102 377.1 347 54.8
BcaC04g19652 Brassica carinata HOM05D004887 ORTHO05D006168 2.2e-102 376.7 344 54.4
C09p52470 Brassica napus HOM05D004887 ORTHO05D006168 2.2e-102 376.7 344 54.4
BolC9t58114H Brassica oleracea HOM05D004887 ORTHO05D006168 2.2e-102 376.7 344 54.4
Gohir.A03G039700 Gossypium hirsutum HOM05D004887 ORTHO05D006168 2.2e-102 376.7 341 54.8
AT5G59960 Arabidopsis thaliana HOM05D004887 ORTHO05D006168 2.8e-102 376.3 342 54.4
BraA10t43799Z Brassica rapa HOM05D004887 ORTHO05D006168 2.8e-102 376.3 344 54.4
Ciclev10028710m.g Citrus clementina HOM05D004887 ORTHO05D006168 2.8e-102 376.3 342 54.1
Phvul.011G065900 Phaseolus vulgaris HOM05D004887 ORTHO05D006168 2.8e-102 376.3 342 54.1
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05D004887 ORTHO05D006168 3.7e-102 375.9 282 64.2
CsaV3_1G033620 Cucumis sativus L. HOM05D004887 ORTHO05D006168 3.7e-102 375.9 354 54.5
A10p17180 Brassica napus HOM05D004887 ORTHO05D006168 4.8e-102 375.6 344 54.4
CAN.G661.4 Capsicum annuum HOM05D004887 ORTHO05D006168 4.8e-102 375.6 342 54.7
Medtr4g063570 Medicago truncatula HOM05D004887 ORTHO05D006168 6.3e-102 375.2 342 53.5
Thhalv10013947m.g Eutrema salsugineum HOM05D004887 ORTHO05D006168 8.2e-102 374.8 342 54.4
Gohir.D03G128400 Gossypium hirsutum HOM05D004887 ORTHO05D006168 8.2e-102 374.8 341 54.5
Potri.001G237000 Populus trichocarpa HOM05D004887 ORTHO05D006168 1.1e-101 374.4 342 55.0
AL781U10010 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 1.4e-101 374.0 342 55.3
Lj3g0008400 Lotus japonicus HOM05D004887 ORTHO05D006168 1.4e-101 374.0 342 53.5
Prupe.6G081500 Prunus persica HOM05D004887 ORTHO05D006168 1.4e-101 374.0 342 53.5
Sp6g21640 Schrenkiella parvula HOM05D004887 ORTHO05D006168 1.8e-101 373.6 342 54.7
TPR.G10217 Trifolium pratense HOM05D004887 ORTHO05D006168 1.8e-101 373.6 347 53.0
A03p11380 Brassica napus HOM05D004887 ORTHO05D006168 3.1e-101 372.9 342 54.4
Gorai.003G135100 Gossypium raimondii HOM05D004887 ORTHO05D006168 3.1e-101 372.9 341 54.5
MBI14_g18541_MAGBIO Magnolia biondii HOM05D004887 ORTHO05D006168 3.1e-101 372.9 346 55.2
DCAR_018895 Daucus carota HOM05D004887 ORTHO05D006168 4.1e-101 372.5 347 52.7
GSVIVG01025008001 Vitis vinifera HOM05D004887 ORTHO05D006168 4.1e-101 372.5 342 55.6
PSO339G5095 Papaver somniferum HOM05D004887 ORTHO05D006168 5.3e-101 372.1 347 54.5
Migut.N02667 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.5e-100 370.5 356 52.5
CiPaw.13G097700 Carya illinoinensis HOM05D004887 ORTHO05D006168 2.0e-100 370.2 344 54.7
Cc01_g12500 Coffea canephora HOM05D004887 ORTHO05D006168 2.0e-100 370.2 342 53.8
Glyma.12G064800 Glycine max HOM05D004887 ORTHO05D006168 2.0e-100 370.2 342 53.8
HPP92_015526 Vanilla planifolia HOM05D004887 ORTHO05D006168 2.0e-100 370.2 342 55.3
Manes.11G133000 Manihot esculenta HOM05D004887 ORTHO05D006168 3.4e-100 369.4 354 52.5
Nn2g12934 Nelumbo nucifera HOM05D004887 ORTHO05D006168 3.4e-100 369.4 349 55.6
Os01g0151600 Oryza sativa ssp. japonica HOM05D004887 ORTHO05D006168 3.4e-100 369.4 335 54.9
ECA247G3571 Erigeron canadensis HOM05D004887 ORTHO05D006168 1.3e-99 367.5 342 53.5
Eucgr.B02388 Eucalyptus grandis HOM05D004887 ORTHO05D006168 2.9e-99 366.3 342 54.1
AL8G36530 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 3.8e-99 365.9 369 51.8
MSTRG.17840 Avicennia marina HOM05D004887 ORTHO05D006168 5.0e-99 365.5 342 52.9
HanXRQChr06g0175771 Helianthus annuus HOM05D004887 ORTHO05D006168 1.4e-98 364.0 343 53.6
Manes.04G032300 Manihot esculenta HOM05D004887 ORTHO05D006168 3.2e-98 362.8 352 54.0
Potri.009G028500 Populus trichocarpa HOM05D004887 ORTHO05D006168 9.4e-98 361.3 343 53.6
Lsat_1_v5_gn_9_22360 Lactuca sativa HOM05D004887 ORTHO05D006168 2.7e-97 359.8 347 51.6
ClCG03G001950 Citrullus lanatus HOM05D004887 ORTHO05D006168 4.7e-97 359.0 380 51.6
Gohir.D08G010900 Gossypium hirsutum HOM05D004887 ORTHO05D006168 1.0e-96 357.8 353 51.0
Gorai.004G004400 Gossypium raimondii HOM05D004887 ORTHO05D006168 1.4e-96 357.5 353 50.4
Aa31LG1G12090 Aethionema arabicum HOM05D004887 ORTHO05D006168 1.8e-96 357.1 341 53.7
Duzib150G1309 Durio zibethinus HOM05D004887 ORTHO05D006168 3.0e-96 356.3 351 51.6
Zm00001eb124290 Zea mays HOM05D004887 ORTHO05D006168 6.7e-96 355.1 333 54.7
Lsat_1_v5_gn_8_77921 Lactuca sativa HOM05D004887 ORTHO05D006168 8.8e-96 354.8 342 52.6
TWI79G0894 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 2.0e-95 353.6 269 61.3
Duzib168G0637 Durio zibethinus HOM05D004887 ORTHO05D006168 4.8e-94 349.0 354 51.1
Peaxi162Scf00406g00137 Petunia axillaris HOM05D004887 ORTHO05D006168 6.3e-94 348.6 311 54.3
AUR62009609 Chenopodium quinoa HOM05D004887 ORTHO05D006168 1.1e-93 347.8 325 53.5
arahy.Tifrunner.gnm1.ann1.LTG2DU Arachis hypogaea HOM05D004887 ORTHO05D006168 1.4e-93 347.4 376 48.7
SalBow3G3342 Salvia bowleyana HOM05D004887 ORTHO05D006168 1.6e-92 344.0 372 49.5
Nitab4.5_0003782g0060 Nicotiana tabacum HOM05D004887 ORTHO05D006168 5.9e-92 342.0 342 51.8
ATR0559G318 Amborella trichopoda HOM05D004887 ORTHO05D006168 1.0e-91 341.3 291 57.7
MELO3C020709.2 Cucumis melo HOM05D004887 ORTHO05D006168 1.3e-91 340.9 273 59.7
Lj1A157T41 Lonicera japonica HOM05D004887 ORTHO05D006168 2.9e-91 339.7 324 54.0
Sed0009981 Sechium edule HOM05D004887 ORTHO05D006168 1.6e-89 334.0 273 59.0
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 8.0e-89 331.6 309 54.0
arahy.Tifrunner.gnm1.ann1.RHUE9Y Arachis hypogaea HOM05D004887 ORTHO05D006168 1.0e-88 331.3 275 56.4
FAN25G2556 Fragaria x ananassa HOM05D004887 ORTHO05D006168 3.0e-88 329.7 301 55.1
Atru.chr3.3838 Acer truncatum HOM05D004887 ORTHO05D006168 1.5e-87 327.4 311 54.3
FAN11G2539 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.5e-87 327.4 347 49.0
SGA_v2.0_scaffold61G21266 Striga asiatica HOM05D004887 ORTHO05D006168 4.4e-87 325.9 302 55.3
Psat7g217880 Pisum sativum HOM05D004887 ORTHO05D006168 1.7e-86 323.9 369 47.2
AUR62001822 Chenopodium quinoa HOM05D004887 ORTHO05D006168 2.8e-86 323.2 304 53.3
QL01p032955 Quercus lobata HOM05D004887 ORTHO05D006168 6.3e-86 322.0 308 53.2
CSS0048955 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 8.2e-86 321.6 350 50.6
CSS0023093 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 1.4e-85 320.9 333 52.0
Carub.0008s2049 Capsella rubella HOM05D004887 ORTHO05D006168 2.4e-85 320.1 245 62.0
Haze_24049 Corylus avellana HOM05D004887 ORTHO05D006168 2.0e-84 317.0 302 54.3
THA.LOC104810819 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 2.0e-84 317.0 318 52.2
CBR_g46654 Chara braunii HOM05D004887 ORTHO05D006168 5.9e-84 315.5 342 49.1
Cfa011464 Carpinus fangiana HOM05D004887 ORTHO05D006168 2.9e-83 313.2 350 48.0
Duzib170G0837 Durio zibethinus HOM05D004887 ORTHO05D006168 2.9e-83 313.2 357 47.6
unitig_899.g14894 Utricularia gibba HOM05D004887 ORTHO05D006168 1.9e-82 310.5 304 51.0
BraA03t10452Z Brassica rapa HOM05D004887 ORTHO05D006168 2.5e-82 310.1 245 60.4
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 2.5e-82 310.1 392 44.4
TWI31G1179 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 1.3e-78 297.7 347 45.5
Psat7g218040 Pisum sativum HOM05D004887 ORTHO05D006168 6.3e-78 295.4 274 52.6
Lj2C1057T15 Lonicera japonica HOM05D004887 ORTHO05D006168 2.8e-73 280.0 225 57.8
FAN16G2077 Fragaria x ananassa HOM05D001446 ORTHO05D001360 3.8e-67 259.6 274 48.5
Sabra16G0142900 Salix brachista HOM05D001446 ORTHO05D001360 4.3e-66 256.1 392 40.3
TAR623G0510 Trochodendron aralioides HOM05D004887 ORTHO05D006168 1.8e-64 250.8 253 51.4
Thecc.09G325700 Theobroma cacao HOM05D004887 ORTHO05D006168 2.0e-63 247.3 250 51.6
Actinidia07046 Actinidia chinensis HOM05D004887 ORTHO05D006168 4.4e-63 246.1 253 51.0
Ca_19183_v3 Cicer arietinum L. HOM05D004887 ORTHO05D006168 5.7e-63 245.7 263 49.4
vmacro03096 Vaccinium macrocarpon HOM05D004887 ORTHO05D006168 1.9e-58 230.7 305 45.9
CARHR273590 Cardamine hirsuta HOM05D004887 ORTHO05D006168 4.3e-58 229.6 182 61.0
Dinv03548 Davidia involucrata HOM05D004887 ORTHO05D006168 3.1e-56 223.4 232 49.6
Nn2g10420 Nelumbo nucifera HOM05D004887 ORTHO05D006168 2.0e-55 220.7 248 49.2
SalBow2G3032 Salvia bowleyana HOM05D004887 ORTHO05D006168 1.0e-51 208.4 261 44.1
Psat7g218000 Pisum sativum HOM05D004887 ORTHO05D006168 2.8e-49 200.3 173 52.6
Gohir.A08G000181 Gossypium hirsutum HOM05D004887 ORTHO05D006168 8.3e-46 188.7 243 42.4
PSO384G0451 Papaver somniferum HOM05D004887 ORTHO05D006168 1.6e-36 157.9 163 49.7
CARHR273600 Cardamine hirsuta HOM05D004887 ORTHO05D006168 2.7e-36 157.1 159 50.9
Nitab4.5_0000610g0050 Nicotiana tabacum HOM05D004887 ORTHO05D006168 2.2e-30 137.5 133 51.1
Sabra09G0019700 Salix brachista HOM05D004887 ORTHO05D006168 2.8e-25 120.6 177 40.1
Carub.0008s2068 Capsella rubella HOM05D004887 ORTHO05D006168 2.4e-21 107.5 90 57.8
BolC6t35622H Brassica oleracea HOM05D004887 ORTHO05D006168 1.1e-18 98.6 66 65.2
C06p04980 Brassica napus HOM05D004887 ORTHO05D006168 9.6e-18 95.5 65 61.5
A02p35440 Brassica napus HOM05D004887 ORTHO05D006168 2.1e-17 94.4 65 61.5
BraA02t08545Z Brassica rapa HOM05D004887 ORTHO05D006168 2.1e-17 94.4 65 61.5
C03p13170 Brassica napus HOM05D004887 ORTHO05D006168 3.7e-17 93.6 65 63.1
BolC3t13778H Brassica oleracea HOM05D004887 ORTHO05D006168 3.1e-16 90.5 61 65.6
Duzib205G1865 Durio zibethinus HOM05D004887 ORTHO05D006168 2.1e-12 77.8 120 42.5
C03p13130 Brassica napus HOM05D004887 ORTHO05D006168 2.5e-10 70.9 119 37.0
Lj1A771T11 Lonicera japonica HOM05D004887 ORTHO05D234499 8.4e-06 55.8 38 65.8


User provided reference genes

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