Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_20950 Physcomitrium patens HOM05D007648 ORTHO05D009613 5.3e-44 180.6 91 100.0
AagrBONN_evm.TU.Sc2ySwM_344.3278 Anthoceros agrestis HOM05D007648 ORTHO05D009613 1.3e-18 96.3 79 62.0
CDE04G2628 Ceratophyllum demersum HOM05D007648 ORTHO05D009613 2.7e-16 88.6 81 54.3
Mapoly0088s0028 Marchantia polymorpha HOM05D007648 ORTHO05D009613 4.6e-16 87.8 82 54.9
TAR625G0376 Trochodendron aralioides HOM05D007648 ORTHO05D009613 6.1e-16 87.4 77 55.8
Ciclev10003012m.g Citrus clementina HOM05D007648 ORTHO05D009613 1.8e-15 85.9 78 52.6
Dinv31891 Davidia involucrata HOM05D007648 ORTHO05D009613 3.9e-15 84.7 77 55.8
QL02p012929 Quercus lobata HOM05D007648 ORTHO05D009613 3.9e-15 84.7 78 55.1
Cc10_g01140 Coffea canephora HOM05D007648 ORTHO05D009613 5.1e-15 84.3 79 59.5
Thecc.08G051700 Theobroma cacao HOM05D007648 ORTHO05D009613 5.1e-15 84.3 77 57.1
ClCG05G015420 Citrullus lanatus HOM05D007648 ORTHO05D009613 6.7e-15 84.0 77 53.2
Actinidia29767 Actinidia chinensis HOM05D007648 ORTHO05D009613 1.1e-14 83.2 78 52.6
CiPaw.07G143700 Carya illinoinensis HOM05D007648 ORTHO05D009613 1.1e-14 83.2 76 52.6
Aqoxy5G01099 Aquilegia oxysepala HOM05D007648 ORTHO05D009613 1.9e-14 82.4 79 50.6
Eucgr.F03708 Eucalyptus grandis HOM05D007648 ORTHO05D009613 2.5e-14 82.0 77 53.2
Sed0006121 Sechium edule HOM05D007648 ORTHO05D009613 2.5e-14 82.0 77 51.9
TWI12G0541 Tripterygium wilfordii HOM05D007648 ORTHO05D009613 3.3e-14 81.6 77 51.9
RcHm_v2.0_Chr6g0303661 Rosa chinensis HOM05D007648 ORTHO05D009613 4.3e-14 81.3 81 55.6
Ah.00g000660 Amaranthus hybridus HOM05D007648 ORTHO05D009613 5.7e-14 80.9 79 53.2
Gorai.002G043700 Gossypium raimondii HOM05D007648 ORTHO05D009613 5.7e-14 80.9 77 54.5
Sc02g0008840 Simmondsia chinensis HOM05D007648 ORTHO05D009613 5.7e-14 80.9 76 52.6
Sc02g0008880 Simmondsia chinensis HOM05D007648 ORTHO05D009613 5.7e-14 80.9 76 52.6
CSS0030217 Camellia sinensis var. sinensis HOM05D007648 ORTHO05D009613 7.4e-14 80.5 77 54.5
Gohir.D01G035600 Gossypium hirsutum HOM05D007648 ORTHO05D009613 7.4e-14 80.5 77 54.5
Os02g0667000 Oryza sativa ssp. japonica HOM05D007648 ORTHO05D009613 9.7e-14 80.1 77 51.9
COL.COLO4_26084 Corchorus olitorius HOM05D007648 ORTHO05D009613 1.3e-13 79.7 77 55.8
DCAR_021446 Daucus carota HOM05D007648 ORTHO05D009613 1.7e-13 79.3 77 51.9
Gohir.A01G044700 Gossypium hirsutum HOM05D007648 ORTHO05D009613 1.7e-13 79.3 77 53.2
GSVIVG01008741001 Vitis vinifera HOM05D007648 ORTHO05D009613 1.7e-13 79.3 77 54.5
EL10Ac1g02083 Beta vulgaris HOM05D000399 ORTHO05D000304 2.2e-13 79.0 77 53.2
MD15G1006800 Malus domestica HOM05D007648 ORTHO05D009613 2.2e-13 79.0 77 54.5
Manes.05G142600 Manihot esculenta HOM05D007648 ORTHO05D009613 2.2e-13 79.0 76 52.6
Duzib093G2040 Durio zibethinus HOM05D007648 ORTHO05D009613 2.8e-13 78.6 77 54.5
Medtr1g026100 Medicago truncatula HOM05D007648 ORTHO05D009613 2.8e-13 78.6 77 51.9
THA.LOC104811443 Tarenaya hassleriana HOM05D007648 ORTHO05D009613 2.8e-13 78.6 76 50.0
HPP92_003481 Vanilla planifolia HOM05D007648 ORTHO05D009613 2.8e-13 78.6 77 54.5
AT1G76065 Arabidopsis thaliana HOM05D007648 ORTHO05D009613 3.7e-13 78.2 77 49.4
CARHR069590 Cardamine hirsuta HOM05D007648 ORTHO05D009613 3.7e-13 78.2 77 49.4
Haze_22702 Corylus avellana HOM05D007648 ORTHO05D009613 3.7e-13 78.2 75 53.3
Lj5g0008894 Lotus japonicus HOM05D007648 ORTHO05D009613 3.7e-13 78.2 77 50.6
MD08G1007600 Malus domestica HOM05D007648 ORTHO05D009613 3.7e-13 78.2 77 55.8
Potri.014G181400 Populus trichocarpa HOM05D007648 ORTHO05D009613 3.7e-13 78.2 75 52.0
AL2G36100 Arabidopsis lyrata HOM05D007648 ORTHO05D009613 4.8e-13 77.8 77 49.4
Carub.0002s2295 Capsella rubella HOM05D007648 ORTHO05D009613 4.8e-13 77.8 77 49.4
CAN.G22.4 Capsicum annuum HOM05D007648 ORTHO05D009613 4.8e-13 77.8 77 51.9
Phvul.001G002600 Phaseolus vulgaris HOM05D007648 ORTHO05D009613 4.8e-13 77.8 77 53.2
Prupe.1G359500 Prunus persica HOM05D007648 ORTHO05D009613 4.8e-13 77.8 77 53.2
BraA08t32933Z Brassica rapa HOM05D007648 ORTHO05D009613 8.2e-13 77.0 77 49.4
MELO3C003728.2 Cucumis melo HOM05D007648 ORTHO05D009613 8.2e-13 77.0 76 51.3
arahy.Tifrunner.gnm1.ann1.8I3IQY Arachis hypogaea HOM05D007648 ORTHO05D009613 1.1e-12 76.6 77 49.4
arahy.Tifrunner.gnm1.ann1.EILY3I Arachis hypogaea HOM05D007648 ORTHO05D009613 1.1e-12 76.6 77 49.4
CsaV3_3G046120 Cucumis sativus L. HOM05D007648 ORTHO05D009613 1.1e-12 76.6 76 50.0
Phvul.001G002300 Phaseolus vulgaris HOM05D007648 ORTHO05D009613 1.1e-12 76.6 77 51.9
Sabra14G0141300 Salix brachista HOM05D000525 ORTHO05D001368 1.1e-12 76.6 75 52.0
BcaC07g37632 Brassica carinata HOM05D007648 ORTHO05D009613 1.4e-12 76.3 77 49.4
A08p09340 Brassica napus HOM05D007648 ORTHO05D009613 1.4e-12 76.3 77 49.4
BolC8t48002H Brassica oleracea HOM05D007648 ORTHO05D009613 1.4e-12 76.3 77 49.4
HanXRQChr06g0185111 Helianthus annuus HOM05D007648 ORTHO05D009613 1.8e-12 75.9 75 50.7
Lsat_1_v5_gn_5_1580 Lactuca sativa HOM05D007648 ORTHO05D009613 1.8e-12 75.9 76 47.4
Glyma.17G261200 Glycine max HOM05D007648 ORTHO05D009613 2.4e-12 75.5 77 50.6
Lalb_Chr19g0131601 Lupinus albus HOM05D007648 ORTHO05D009613 2.4e-12 75.5 77 50.6
MBI05_g46751_MAGBIO Magnolia biondii HOM05D007648 ORTHO05D009613 2.4e-12 75.5 68 52.9
HPP92_026879 Vanilla planifolia HOM05D007648 ORTHO05D009613 3.1e-12 75.1 77 51.9
BcaB07g30075 Brassica carinata HOM05D007648 ORTHO05D009613 4.1e-12 74.7 77 49.4
Thhalv10019391m.g Eutrema salsugineum HOM05D007648 ORTHO05D009613 4.1e-12 74.7 77 49.4
PSO210G3155 Papaver somniferum HOM05D007648 ORTHO05D009613 4.1e-12 74.7 74 50.0
Hund05152 Selenicereus undatus HOM05D000399 ORTHO05D000304 4.1e-12 74.7 75 49.3
Ca_13484_v3 Cicer arietinum L. HOM05D007648 ORTHO05D009613 5.3e-12 74.3 77 50.6
PGSC0003DMG400023820 Solanum tuberosum HOM05D007648 ORTHO05D009613 5.3e-12 74.3 77 49.4
Atru.chr13.217 Acer truncatum HOM05D007648 ORTHO05D009613 6.9e-12 73.9 75 52.0
Rhsim07G0248300 Rhododendron simsii HOM05D007648 ORTHO05D009613 6.9e-12 73.9 77 51.9
ECA238G3742 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.1e-12 73.6 72 50.0
Rhsim07G0248100 Rhododendron simsii HOM05D007648 ORTHO05D009613 9.1e-12 73.6 78 50.0
vmacro17151 Vaccinium macrocarpon HOM05D007648 ORTHO05D009613 9.1e-12 73.6 77 53.2
FvH4_2g37960 Fragaria vesca HOM05D007648 ORTHO05D009613 1.2e-11 73.2 76 51.3
Sopen06g017690 Solanum pennellii HOM05D007648 ORTHO05D009613 1.2e-11 73.2 77 48.1
Psat6g001120 Pisum sativum HOM05D007648 ORTHO05D009613 1.5e-11 72.8 77 49.4
FAN15G0474 Fragaria x ananassa HOM05D007648 ORTHO05D009613 2.0e-11 72.4 76 50.0
SalBow7G1731 Salvia bowleyana HOM05D007648 ORTHO05D009613 2.6e-11 72.0 76 51.3
VMungo0647G0751 Vigna mungo HOM05D007648 ORTHO05D009613 2.6e-11 72.0 75 52.0
Aa31LG4G6180 Aethionema arabicum HOM05D007648 ORTHO05D009613 3.4e-11 71.6 76 47.4
FAN20G1741 Fragaria x ananassa HOM05D007648 ORTHO05D009613 1.0e-10 70.1 76 50.0
BraA02t08664Z Brassica rapa HOM05D007648 ORTHO05D009613 1.7e-10 69.3 74 47.3
Migut.C00899 Erythranthe guttata HOM05D007648 ORTHO05D009613 1.7e-10 69.3 76 48.7
CAN.G22.7 Capsicum annuum HOM05D007648 ORTHO05D009613 1.4e-09 66.2 76 46.1
Nitab4.5_0004193g0030 Nicotiana tabacum HOM05D000998 ORTHO05D000806 4.2e-09 64.7 66 50.0
BolC2t11627H Brassica oleracea HOM05D007648 ORTHO05D009613 1.2e-08 63.2 77 45.5
Peaxi162Scf00394g00212 Petunia axillaris HOM05D007648 ORTHO05D009613 3.6e-08 61.6 65 50.8
AUR62036713 Chenopodium quinoa HOM05D000399 ORTHO05D000304 2.3e-07 58.9 135 32.6
Nitab4.5_0000716g0050 Nicotiana tabacum HOM05D000998 ORTHO05D000806 3.0e-07 58.5 61 49.2
C02p55750 Brassica napus HOM05D007648 ORTHO05D009613 8.8e-07 57.0 66 45.5
A02p36690 Brassica napus HOM05D007648 ORTHO05D009613 1.5e-06 56.2 59 49.2
Cre14.g626667 Chlamydomonas reinhardtii HOM05D007648 ORTHO05D009613 2.0e-06 55.8 74 44.6
MCO07G444 Micromonas commoda HOM05D007648 ORTHO05D009613 3.3e-06 55.1 73 39.7


User provided reference genes

Program Settings