Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 5.2e-128 461.1 236 100.0
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 1.2e-87 327.0 234 71.8
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 5.4e-48 195.3 201 48.3
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 1.5e-42 177.2 191 45.5
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 4.4e-42 175.6 184 46.7
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 5.7e-42 175.3 192 45.8
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 9.8e-42 174.5 192 45.3
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 8.3e-41 171.4 211 41.2
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 1.1e-40 171.0 192 44.3
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 2.4e-40 169.9 184 46.2
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 1.2e-39 167.5 192 44.3
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 1.6e-39 167.2 192 44.3
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 2.0e-39 166.8 192 43.8
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 2.0e-39 166.8 189 43.9
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 3.5e-39 166.0 192 43.8
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 3.5e-39 166.0 219 41.1
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 4.5e-39 165.6 192 44.3
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 4.5e-39 165.6 213 41.3
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 7.7e-39 164.9 192 43.2
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 7.7e-39 164.9 198 43.9
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 7.7e-39 164.9 215 39.5
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 7.7e-39 164.9 196 42.3
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 1.0e-38 164.5 213 40.8
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 1.3e-38 164.1 194 42.8
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 1.7e-38 163.7 218 41.7
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 1.7e-38 163.7 192 43.8
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 1.7e-38 163.7 215 39.1
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 2.3e-38 163.3 199 42.7
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 2.3e-38 163.3 214 38.8
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 2.3e-38 163.3 211 40.8
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 2.9e-38 162.9 196 40.8
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 2.9e-38 162.9 212 40.6
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 6.6e-38 161.8 192 41.1
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 6.6e-38 161.8 180 45.6
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 6.6e-38 161.8 217 39.2
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 8.6e-38 161.4 192 42.7
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 1.1e-37 161.0 192 43.2
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 2.5e-37 159.8 184 45.1
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 3.3e-37 159.5 190 43.7
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 3.3e-37 159.5 215 39.5
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 7.2e-37 158.3 184 41.8
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 1.2e-36 157.5 213 39.9
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 1.6e-36 157.1 184 44.0
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 2.8e-36 156.4 192 41.1
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 3.6e-36 156.0 192 41.1
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 3.6e-36 156.0 190 41.6
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 3.6e-36 156.0 213 40.8
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 3.6e-36 156.0 192 42.2
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 8.0e-36 154.8 192 41.7
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 1.0e-35 154.5 196 42.3
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 1.4e-35 154.1 193 42.0
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 1.8e-35 153.7 189 42.3
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 2.3e-35 153.3 179 43.0
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 3.0e-35 152.9 192 41.1
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 4.0e-35 152.5 184 41.8
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 4.0e-35 152.5 211 37.4
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 5.2e-35 152.1 202 38.6
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 6.8e-35 151.8 202 39.6
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 8.9e-35 151.4 198 42.4
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 8.9e-35 151.4 185 41.6
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 2.0e-34 150.2 192 39.6
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 2.0e-34 150.2 192 39.6
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 2.6e-34 149.8 207 37.2
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 5.7e-34 148.7 212 39.2
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 7.5e-34 148.3 196 38.3
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 9.8e-34 147.9 192 40.1
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 9.8e-34 147.9 178 42.1
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 1.7e-33 147.1 204 40.2
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 2.9e-33 146.4 171 44.4
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 3.7e-33 146.0 200 42.0
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 3.7e-33 146.0 202 38.1
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 4.9e-33 145.6 191 39.3
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 4.9e-33 145.6 191 39.3
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 8.3e-33 144.8 195 40.0
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 1.4e-32 144.1 184 41.8
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 1.8e-32 143.7 194 42.3
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 2.4e-32 143.3 191 38.7
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 2.4e-32 143.3 191 38.7
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 2.4e-32 143.3 181 39.8
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 3.2e-32 142.9 196 38.8
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 5.4e-32 142.1 192 38.5
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 9.2e-32 141.4 215 34.9
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.6e-31 140.6 199 38.2
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 2.0e-31 140.2 192 38.5
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 2.0e-31 140.2 199 38.2
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 2.0e-31 140.2 182 38.5
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 7.8e-31 138.3 212 36.8
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 1.0e-30 137.9 166 43.4
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 1.0e-30 137.9 179 39.7
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 1.0e-30 137.9 196 41.8
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 1.0e-30 137.9 209 36.4
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.3e-30 137.5 209 35.9
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 1.3e-30 137.5 182 39.0
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.7e-30 137.1 209 35.9
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 3.9e-30 136.0 192 37.0
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 6.6e-30 135.2 218 35.8
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 6.6e-30 135.2 194 38.1
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 2.5e-29 133.3 207 35.7
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 3.3e-29 132.9 148 45.9
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 3.3e-29 132.9 192 37.0
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 7.3e-29 131.7 209 35.4
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 9.5e-29 131.3 179 38.0
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 1.2e-28 131.0 212 34.9
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 4.7e-28 129.0 217 35.5
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 8.0e-28 128.3 187 37.4
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 1.0e-27 127.9 194 36.1
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 2.3e-27 126.7 192 35.9
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 6.8e-27 125.2 213 33.8
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 3.4e-26 122.9 202 35.6
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 3.4e-26 122.9 210 33.8
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 3.4e-26 122.9 210 33.8
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 4.4e-26 122.5 213 35.2
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 7.5e-26 121.7 202 34.2
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 9.8e-26 121.3 192 34.9
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 9.8e-26 121.3 210 33.3
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 1.7e-25 120.6 201 33.8
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 4.9e-25 119.0 151 38.4
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 1.9e-24 117.1 213 32.9
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 7.0e-24 115.2 140 42.1
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 1.2e-23 114.4 196 33.2
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 3.5e-23 112.8 207 31.4
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 3.5e-23 112.8 190 32.6
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 4.6e-23 112.5 192 34.4
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 7.8e-23 111.7 189 36.0
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 1.0e-22 111.3 192 32.3
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 1.0e-22 111.3 192 32.3
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 1.0e-22 111.3 192 32.3
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 3.0e-22 109.8 204 33.3
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 1.9e-21 107.1 207 30.4
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 5.6e-21 105.5 207 30.4
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 7.3e-21 105.1 184 32.1
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.2e-20 104.4 192 33.3
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 1.2e-20 104.4 192 33.3
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 4.7e-20 102.4 194 31.4
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 4.7e-20 102.4 202 28.7
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 4.7e-20 102.4 188 29.3
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 6.2e-20 102.1 202 29.2
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 8.1e-20 101.7 187 33.2
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 8.1e-20 101.7 187 33.2
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 2.3e-19 100.1 205 29.8
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 3.1e-19 99.8 203 31.0
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 5.2e-19 99.0 105 45.7
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 3.4e-18 96.3 191 30.9
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 3.4e-18 96.3 200 31.0
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 5.8e-18 95.5 194 29.9
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 2.9e-17 93.2 164 34.8
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 3.7e-17 92.8 194 29.4
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 8.3e-17 91.7 205 30.2
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 1.1e-16 91.3 209 27.8
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 1.1e-16 91.3 188 32.4
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 1.9e-16 90.5 215 28.8
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 1.9e-16 90.5 215 28.8
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 3.2e-16 89.7 207 28.0
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 2.1e-15 87.0 175 29.7
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 3.3e-13 79.7 126 36.5
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 5.6e-13 79.0 153 27.5
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.6e-12 77.4 145 27.6
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 2.1e-12 77.0 125 36.8
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 2.8e-12 76.6 170 29.4
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 4.7e-12 75.9 197 31.5
Thecc.01G291900 Theobroma cacao HOM05D004265 ORTHO05D005175 4.1e-08 62.8 54 53.7
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 3.5e-07 59.7 157 27.4


User provided reference genes

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